Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0025750 | OGI:02037480 | 11/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:26218730-26220586 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGATAATAGACAGGGTACAGGTAGAAGCTATCAATTCTTTTTCGAACTTGGAATTATTAAAAGAAGTCTATGGACTGATATGGATTCTACCCATTTTGACCCTCTTACTGGGAATCACAATAGAAGTACTCGTAATTGTGTGGTTAGAAAGAGAAATATCCGCATCGATACAACAACGTATTGGTCCTGAATATGCTGGCCCCCTGGGACTGCTTCAAGCTATAGCAGATGGAACTAAGCTACTTTTTAAAGAGGATATCTTGCCATCCCGAGGGGATATTCCCTTATTTAGCATTGGACCGTCTATAGCAGTCATATCAATTTTATTAAGTTTTTTAGTTATTCCTTTGGGATATCGCTTTGTTTTAGCGGATCTTAGTATTGGTGtttttttatggattgccatttcaagtattgctcctattggtcttcttatggcaggatatagctcaaataataatattctttttcaggtggtctacgagctgccgctcaatctattagttatgaaatcccattaactttttgtgtactagcaatatctctacgtgcgattcgttaaaataggatctttttcctctgaaattcattgaatatttatcctccttttcttattctattcaggttagtaagttaaactagatagctatatgagtgaaacaaaactgcttattaatttgtagtaaaaagaaaaaatctcatttcctatgtacaagaaaaaatggaagtaaacataagcggtgtaaattctttaccccaaggttgagaTtttttgattagtcatcatatcttgaagcgggcaataataagggattcccgatacagaaagttgtaatcataagggaatccatcaaaagttagtgagggattagaaacactaaagtacataaaggattagtaatgagggaatctaaagcattagatatttttcctcataaaaggaatcataataaggacttgaaattggtggaaatgagcaagtagtactttcttcggattccgatccagagtatgttcccattcacttgttaaggaaatggctatcaagaacgaattaaccctttattccttttttctttttaaatacccctcgggaaagaagaaggacaaaagataatgcaatacaaaaaaaagatctttatttattctttccgtcgtttatccatattcatacagaattcttcatgaactaatacccaactcttttcgtttattaattgttataacgagtgttttattccaagattaagttattgctgaacaagaaaaagtaccattaattataaaggatgagatgaatccgaagcgtttttttattattctagcagacagaattcctttggtctaatttaggacgttgaaatcgattttatcttagataattctaactacgcccaagaagataataacgaaatgaaacagtactttccttttttctgatcatagaggagccgtatgaaactaaggtttcatgtacggttttggAatagcggtgggaactgtgatgttatcgtcgactatgattatccaacagttcaagtacagttgatatagttgaagcacagtcaaaatatggtttttttggatggaatctttggcgtcagcctataggttttctggtttttctaatttcttctttggcggaatgtgaaagattaccctttgatttaccagaagcggaggaagaattagtagcaggttatcaaaccgaatattctggtatcaaatatggtttattttatcttgttttgtgggtaacggtgcacaaatttttggaatccggtaccaacaGgtataatcccccccagaactacgttttctttcaggcctttcaaccaatcaATacgacctcgtaa
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| CDS seq | ATGATAATAGACAGGGTACAGGTAGAAGCTATCAATTCTTTTTCGAACTTGGAATTATTAAAAGAAGTCTATGGACTGATATGGATTCTACCCATTTTGACCCTCTTACTGGGAATCACAATAGAAGTACTCGTAATTGTGTGGTTAGAAAGAGAAATATCCGCATCGATACAACAACGTATTGGTCCTGAATATGCTGGCCCCCTGGGACTGCTTCAAGCTATAGCAGATGGAACTAAGCTACTTTTTAAAGAGGATATCTTGCCATCCCGAGGGGATATTCCCTTATTTAGCATTGGACCGTCTATAGCAGTCATATCAATTTTATTAAGTTTTTTAGTTATTCCTTTGGGATATCGCTTTGTTTTAGCGGATCTTAGTATTGGTGtttttttatggattgccatttcaagtattgctcctattggtcttcttatggcaggatatagctcaaataataatattctttttcaggtggtctacgagctgccgctcaatctattacctataggttttctggtttttctaatttcttctttggcggaatgtgaaagattaccctttgatttaccagaagcggaggaagaattagtagcaggttatcaaaccgaatattctggtatcaaatatggtttattttatcttgttttgtgggtaacggtgcacaaatttttggaatccggtaccaacaGgtataatcccccccagaactacgttttctttcaggcctttcaaccaatcaATacgacctcgtaa
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| Protein seq | MIIDRVQVEAINSFSNLELLKEVYGLIWILPILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNNILFQVVYELPLNLLPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVLWVTVHKFLESGTNRYNPPQNYVFFQAFQPINTTS |
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| Function | NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [UniProtKB/Swiss-Prot:P12124] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0025750 | OsNaBo_01g0025750.01 | Chr01 | 26218730 | 26220586 | + | NAM | ||
| CDS seq | ATGATAATAGACAGGGTACAGGTAGAAGCTATCAATTCTTTTTCGAACTTGGAATTATTAAAAGAAGTCTATGGACTGATATGGATTCTACCCATTTTGACCCTCTTACTGGGAATCACAATAGAAGTACTCGTAATTGTGTGGTTAGAAAGAGAAATATCCGCATCGATACAACAACGTATTGGTCCTGAATATGCTGGCCCCCTGGGACTGCTTCAAGCTATAGCAGATGGAACTAAGCTACTTTTTAAAGAGGATATCTTGCCATCCCGAGGGGATATTCCCTTATTTAGCATTGGACCGTCTATAGCAGTCATATCAATTTTATTAAGTTTTTTAGTTATTCCTTTGGGATATCGCTTTGTTTTAGCGGATCTTAGTATTGGTGtttttttatggattgccatttcaagtattgctcctattggtcttcttatggcaggatatagctcaaataataatattctttttcaggtggtctacgagctgccgctcaatctattacctataggttttctggtttttctaatttcttctttggcggaatgtgaaagattaccctttgatttaccagaagcggaggaagaattagtagcaggttatcaaaccgaatattctggtatcaaatatggtttattttatcttgttttgtgggtaacggtgcacaaatttttggaatccggtaccaacaGgtataatcccccccagaactacgttttctttcaggcctttcaaccaatcaATacgacctcgtaa
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| Protein seq | MIIDRVQVEAINSFSNLELLKEVYGLIWILPILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNNILFQVVYELPLNLLPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVLWVTVHKFLESGTNRYNPPQNYVFFQAFQPINTTS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 50.156811 | 23.275026 | 62.363304 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21396 | RBH | 40.554802 | 39.038059 | 10.751688 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026680 | RBH | 27.110653 | 18.811808 | 72.846664 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0026630 | RBH | 36.943680 | 15.246403 | 47.013710 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0015191 | SBH | 43.328491 | 0.392809 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0002581 | SBH | 34.269939 | 17.896538 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026000 | RBH | 50.009655 | 8.212713 | 50.160526 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
