Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0016180 | OGI:01044920 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:14890189-14893505 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatgtattgatagtgactccagacgtggcaagagcttgtggcgagaatcccttcagtttgctgcatcgctgtatcactaatgtcctcaaggctaccaagctctgaaatttTCtctctggccagtggatgagaccatcacaactaataattaccaaaTCTttaagctgtgcaaagcatgcccatagtgcttgtgcacctgAacggaagaacacgttgaagccaactagcttcataactggcaaagggtactcacgattctgattgtccttgccatccacccactcaatcaaaaagcgttcagttagaggtgttgtttcttcaccttcatgctgcaatctcagagtggacaatgaagccatgtatctaggtatgcaaaggagcatctgttcagagccatttcctatgtctaacacacTgagctttggtgcttctggtagacttgtcaactctggacatttcacaatactaatgttctcaaggttagggaaggtcGGTggtttgtcttgtgttccttccgctgcctgccatctctcgaattgatttaaatcacagagttcgagttcctttaaagctggtaatgcaggctctgacatattactgtcactagtaggcagtgatgttagctctcCAcatcccttaataaccagcttctcaagctgaggaaaatcaagcttttcttgtctctcatttatttcccaccatcggttgaaactcttcaagtttgttagtttaagctcttttagttttgggaatgttgacggtatctcactgttttgaccaatgctgcacaaatactgcagtccatggaatccatccagccgAagaacttgaagatcttgtagctgccaaaactgaggaaTAttttggcacattgtacaattatctagatcaatctctacaaggcgtttaagcatacccatccatgatgggaaagatgagctcttgcaggacttgacattcagaacgcgaagctcatcatgaggtttGAgagcttcgatcaccttctcatgacaatctgatgcattggtgtaagatcgatcttctttgtcattttcattccatactaaagaaagtgttgagagcttcttgttttcaagtttcatcagtcttgcatcttcctcgttaacattttccatctgacgtagctctagttgaccgctgatatctaaatgttgtagctctccgacattactgcaaccagagccagtaccagctacaaaacaagtgagtgtttgtaaggaagtgagTtttcccaaatctggaggcatgtgcttcaaacttgtacatccatgagtgtggaggtgacagagggctgtcatgtacttcatttgttttggaagtcgatagagatcactgcagtcagaaaggttcaaagttcgtagacagtataggatacttatatcgtcaggaagtactctgatatcactttctgagagatctaggtacctcaagtgatgtagatgctttggctgaagtaagaacaaactcctacactgatcgagtttcaatgctcgtacagctctgtattttgctgagtgttgcaatgaacttgatgtgAaaataggttcatcacagagcagtgtttggatagctggagattcttttttcagataatcattcatcacattatctggatcatcacatgataaaagtagatggcgagtagcacttgaatatgaccctctttcagtaggatatttagttAtacattccTttcccataattgaagtggcaacatcatgcataagatcgtgcatcttacatatgattctggaacaatgcccatggttgcttctatatttgtcaaatcggactcgcttcaactcctgaaagaaagatctagaagctaattcattgaaaataccttctccagtggtttcaaggcggATatcttttatttctgggattaatccatttgcgatccatagctggacaagcttgtccttatcaatctcgtaatttaggaaaaatagcacagaaagcaaagcactgcttcatatgtgacggcaaattgtcatagctgagcttcagtattggtaaaattccagtctccttagtgcagatactactgcttcttaatactgcctcccattcttccaggctggtcttggtataaagtacagaacctagtgcttttgctgccAatggcaacccagcacatctctccacaaactgatcaatcatttccttctttttagataataatgacttatcatccatttcaactagctcagcgggcttgatctccTttttcggtctaaaagctgctgtgtcaatgatttccttaatgacactgttatttagagcagtaagaTtatatgcatcagttgtgtgcattagttcagcaactcctccttcacgagttgttgctaacactgcactaccagtgctaccatgttcgaggcatttcttcagTttacgccatttttcatcatccctattccaaacatcgtccaatacaaggagatacCTctgcccgctcactaatttctgaagctcgtcaagtgccgaggtttgattttcattgatggttactttatcaccttttttaggaactgcatcaactatacttctagcaacagacgcaacatcaaagttgtcagacacacatacccagatcatcaactggaaatggttctgaatttcaggctcattgtaaatgagTttggctaaggtagttttgcctagccctcccattccaacaataggaaggacggtgagTtttacattgcttgcttgggagagcaatatgctaacgagcagcttcttatctTCAtctctcgatctgctagcaatgttcattgggtcaaagatgtcagaatcggttagcctccattccttggactctatagactgaggttcgaatttaaacccaaaggcattcatctctgcgattagcacttcaatattctgcacgatccggcagagcttcctgcccatcttgtatcggaacacgacacggttgtgagtaggaaagagttttaccgcatcgatgccgagcttggtgtagtgcccgttcttcttggcttcacgccgtagcgcctcgtacttgaactcgtcgaagacttcattcgcctcataggccactgccttgagctcctcaagccaggccttagctccttccctgtgttcagatgcctgcttctcagcgtcagagatgacgtccaagatggcccggcagcttgcgcttgaggatcttgtgctgcacttccatgccttccatcaccttgtactgctccaggaggtagctggaagccttctccttcaccatgcggaccagtggcccgatcaccatgctggtcaccagttcacccat
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| CDS seq | atgggtgaactggtgaccagcatggtgatcgggccactggtccgcatggtgaaggagaaggcttccagctacctcctggagcagtacaaggcatggaagtgcagcacaagatcctcaagcgcaagctgccgggccatcttggacgtcatctctgacgctgagaagcaggcatctgaacacagggaaggagctaaggcctggcttgaggagctcaaggcagtggcctatgaggcgaatgaagtcttcgacgagttcaagtacgaggcgctacggcgtgaagccaagaagaacgggcactacaccaagctcggcatcgatgcggtaaaactctttcctactcacaaccgtgtcgtgttccgatacaagatgggcaggaagctctgccggatcgtgcagaatattgaagtgctaatcgcagagatgaatgcctttgggtttaaattcgaacctcagtctatagagtccaaggaatggaggctaaccgattctgacatctttgacccaatgaacattgctagcagatcgagagaTGAagataagaagctgctcgttagcatattgctctcccaagcaagcaatgtaaaActcaccgtccttcctattgttggaatgggagggctaggcaaaactaccttagccaaActcatttacaatgagcctgaaattcagaaccatttccagttgatgatctgggtatgtgtgtctgacaactttgatgttgcgtctgttgctagaagtatagttgatgcagttcctaaaaaaggtgataaagtaaccatcaatgaaaatcaaacctcggcacttgacgagcttcagaaattagtgagcgggcagAGgtatctccttgtattggacgatgtttggaatagggatgatgaaaaatggcgtaaActgaagaaatgcctcgaacatggtagcactggtagtgcagtgttagcaacaactcgtgaaggaggagttgctgaactaatgcacacaactgatgcatataAtcttactgctctaaataacagtgtcattaaggaaatcattgacacagcagcttttagaccgaaaaAggagatcaagcccgctgagctagttgaaatggatgataagtcattattatctaaaaagaaggaaatgattgatcagtttgtggagagatgtgctgggttgccatTggcagcaaaagcactaggttctgtactttataccaagaccagcctggaagaatgggaggcagtattaagaagcagtagtatctgcactaaggagactggaattttaccaatactgaagctcagctatgacaatttgcctgctttgctttctgtgctatttttcctaaattacgagattgataaggacaagcttgtccagctatggatcgcaaatggattaatcccagaaataaaagatATccgccttgaaaccactggagaaggtattttcaatgaattagcttctagatctttctttcaggagttgaagcgagtccgatttgacaaatatagaagcaaccatgggcattgttccagaatcatatgtaagatgcacgatcttatgcatgatgttgccacttcaattatgggaaAggaatgtaTaactaaatatcctactgaaagagggtcatattcaagtgctactcgccatctacttttatcatgtgatgatccagataatgtgatgaatgattatctgaaaaaagaatctccagctatccaaacactgctctgtgatgaacctatttTcacatcaagttcattgcaacactcagcaaaatacagagctgtacgagcattgaaactcgatcagtgtaggagtttgttcttacttcagccaaagcatctacatcacttgagtgatctctatcgacttccaaaacaaatgaagtacatgacagccctctgtcacctccacactcatggatgtacaagtttgaagcacatgcctccagatttgggaaaActcacttccttacaaacactcacttgttttgtagctggtactggctctggttgcagtaatgtcggagagctacaacatttagatatcagcggtcaactagagctacgtcagatggaaaatgttaacgaggaagatgcaagactgatgaaacttgaaaacaagaagctctcaacactttctttagtatggaatgaaaatgacaaagaagatcgatcttacaccaatgcatcagattgtcatgagaaggtgatcgaagctcTCaaacctcatgatgagcttcgcgttctgaatgtcaagtcctgcaagagctcatctttcccatcatggatgggtatgcttaaacgccttgtagagattgatctagataattgtacaatgtgccaaaaTAttcctcagttttggcagctacaagatcttcaagttctTcggctggatggattccatggactgcagtatttgtgcagcattggtcaaaacagtgagataccgtcaacattcccaaaactaaaagagcttaaactaacaaacttgaagagtttcaaccgatggtgggaaataaatgagagacaagaaaagcttgattttcctcagcttgagaagctggttattaagggatgTGgagagctaacatcactgcctactagtgacagtaatatgtcagagcctgcattaccagctttaaaggaactcgaactctgtgatttaaatcaattcgagagatggcaggcagcggaaggaacacaagacaaaccACCgaccttccctaaccttgagaacattagtattgtgaaatgtccagagttgacaagtctaccagaagcaccaaagctcAgtgtgttagacataggaaatggctctgaacagatgctcctttgcatacctagatacatggcttcattgtccactctgagattgcagcatgaaggtgaagaaacaacacctctaactgaacgctttttgattgagtgggtggatggcaaggacaatcagaatcgtgagtaccctttgccagttatgaagctagttggcttcaacgtgttcttccgtTcaggtgcacaagcactatgggcatgctttgcacagcttaaAGAtttggtaattattagttgtgatggtctcatccactggccagagaGAaaatttcagagcttggtagccttgaggacattagtgatacagcgatgcagcaaactgaagggattctcgccacaagctcttgccacgtctggagtcactatcaatacatga
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| Protein seq | MGELVTSMVIGPLVRMVKEKASSYLLEQYKAWKCSTRSSSASCRAILDVISDAEKQASEHREGAKAWLEELKAVAYEANEVFDEFKYEALRREAKKNGHYTKLGIDAVKLFPTHNRVVFRYKMGRKLCRIVQNIEVLIAEMNAFGFKFEPQSIESKEWRLTDSDIFDPMNIASRSRDEDKKLLVSILLSQASNVKLTVLPIVGMGGLGKTTLAKLIYNEPEIQNHFQLMIWVCVSDNFDVASVARSIVDAVPKKGDKVTINENQTSALDELQKLVSGQRYLLVLDDVWNRDDEKWRKLKKCLEHGSTGSAVLATTREGGVAELMHTTDAYNLTALNNSVIKEIIDTAAFRPKKEIKPAELVEMDDKSLLSKKKEMIDQFVERCAGLPLAAKALGSVLYTKTSLEEWEAVLRSSSICTKETGILPILKLSYDNLPALLSVLFFLNYEIDKDKLVQLWIANGLIPEIKDIRLETTGEGIFNELASRSFFQELKRVRFDKYRSNHGHCSRIICKMHDLMHDVATSIMGKECITKYPTERGSYSSATRHLLLSCDDPDNVMNDYLKKESPAIQTLLCDEPIFTSSSLQHSAKYRAVRALKLDQCRSLFLLQPKHLHHLSDLYRLPKQMKYMTALCHLHTHGCTSLKHMPPDLGKLTSLQTLTCFVAGTGSGCSNVGELQHLDISGQLELRQMENVNEEDARLMKLENKKLSTLSLVWNENDKEDRSYTNASDCHEKVIEALKPHDELRVLNVKSCKSSSFPSWMGMLKRLVEIDLDNCTMCQNIPQFWQLQDLQVLRLDGFHGLQYLCSIGQNSEIPSTFPKLKELKLTNLKSFNRWWEINERQEKLDFPQLEKLVIKGCGELTSLPTSDSNMSEPALPALKELELCDLNQFERWQAAEGTQDKPPTFPNLENISIVKCPELTSLPEAPKLSVLDIGNGSEQMLLCIPRYMASLSTLRLQHEGEETTPLTERFLIEWVDGKDNQNREYPLPVMKLVGFNVFFRSGAQALWACFAQLKDLVIISCDGLIHWPERKFQSLVALRTLVIQRCSKLKGFSPQALATSGVTINT |
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| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0016180 | OsNaBo_01g0016180.01 | Chr01 | 14890189 | 14893505 | - | NAM | ||
| CDS seq | atgggtgaactggtgaccagcatggtgatcgggccactggtccgcatggtgaaggagaaggcttccagctacctcctggagcagtacaaggcatggaagtgcagcacaagatcctcaagcgcaagctgccgggccatcttggacgtcatctctgacgctgagaagcaggcatctgaacacagggaaggagctaaggcctggcttgaggagctcaaggcagtggcctatgaggcgaatgaagtcttcgacgagttcaagtacgaggcgctacggcgtgaagccaagaagaacgggcactacaccaagctcggcatcgatgcggtaaaactctttcctactcacaaccgtgtcgtgttccgatacaagatgggcaggaagctctgccggatcgtgcagaatattgaagtgctaatcgcagagatgaatgcctttgggtttaaattcgaacctcagtctatagagtccaaggaatggaggctaaccgattctgacatctttgacccaatgaacattgctagcagatcgagagaTGAagataagaagctgctcgttagcatattgctctcccaagcaagcaatgtaaaActcaccgtccttcctattgttggaatgggagggctaggcaaaactaccttagccaaActcatttacaatgagcctgaaattcagaaccatttccagttgatgatctgggtatgtgtgtctgacaactttgatgttgcgtctgttgctagaagtatagttgatgcagttcctaaaaaaggtgataaagtaaccatcaatgaaaatcaaacctcggcacttgacgagcttcagaaattagtgagcgggcagAGgtatctccttgtattggacgatgtttggaatagggatgatgaaaaatggcgtaaActgaagaaatgcctcgaacatggtagcactggtagtgcagtgttagcaacaactcgtgaaggaggagttgctgaactaatgcacacaactgatgcatataAtcttactgctctaaataacagtgtcattaaggaaatcattgacacagcagcttttagaccgaaaaAggagatcaagcccgctgagctagttgaaatggatgataagtcattattatctaaaaagaaggaaatgattgatcagtttgtggagagatgtgctgggttgccatTggcagcaaaagcactaggttctgtactttataccaagaccagcctggaagaatgggaggcagtattaagaagcagtagtatctgcactaaggagactggaattttaccaatactgaagctcagctatgacaatttgcctgctttgctttctgtgctatttttcctaaattacgagattgataaggacaagcttgtccagctatggatcgcaaatggattaatcccagaaataaaagatATccgccttgaaaccactggagaaggtattttcaatgaattagcttctagatctttctttcaggagttgaagcgagtccgatttgacaaatatagaagcaaccatgggcattgttccagaatcatatgtaagatgcacgatcttatgcatgatgttgccacttcaattatgggaaAggaatgtaTaactaaatatcctactgaaagagggtcatattcaagtgctactcgccatctacttttatcatgtgatgatccagataatgtgatgaatgattatctgaaaaaagaatctccagctatccaaacactgctctgtgatgaacctatttTcacatcaagttcattgcaacactcagcaaaatacagagctgtacgagcattgaaactcgatcagtgtaggagtttgttcttacttcagccaaagcatctacatcacttgagtgatctctatcgacttccaaaacaaatgaagtacatgacagccctctgtcacctccacactcatggatgtacaagtttgaagcacatgcctccagatttgggaaaActcacttccttacaaacactcacttgttttgtagctggtactggctctggttgcagtaatgtcggagagctacaacatttagatatcagcggtcaactagagctacgtcagatggaaaatgttaacgaggaagatgcaagactgatgaaacttgaaaacaagaagctctcaacactttctttagtatggaatgaaaatgacaaagaagatcgatcttacaccaatgcatcagattgtcatgagaaggtgatcgaagctcTCaaacctcatgatgagcttcgcgttctgaatgtcaagtcctgcaagagctcatctttcccatcatggatgggtatgcttaaacgccttgtagagattgatctagataattgtacaatgtgccaaaaTAttcctcagttttggcagctacaagatcttcaagttctTcggctggatggattccatggactgcagtatttgtgcagcattggtcaaaacagtgagataccgtcaacattcccaaaactaaaagagcttaaactaacaaacttgaagagtttcaaccgatggtgggaaataaatgagagacaagaaaagcttgattttcctcagcttgagaagctggttattaagggatgTGgagagctaacatcactgcctactagtgacagtaatatgtcagagcctgcattaccagctttaaaggaactcgaactctgtgatttaaatcaattcgagagatggcaggcagcggaaggaacacaagacaaaccACCgaccttccctaaccttgagaacattagtattgtgaaatgtccagagttgacaagtctaccagaagcaccaaagctcAgtgtgttagacataggaaatggctctgaacagatgctcctttgcatacctagatacatggcttcattgtccactctgagattgcagcatgaaggtgaagaaacaacacctctaactgaacgctttttgattgagtgggtggatggcaaggacaatcagaatcgtgagtaccctttgccagttatgaagctagttggcttcaacgtgttcttccgtTcaggtgcacaagcactatgggcatgctttgcacagcttaaAGAtttggtaattattagttgtgatggtctcatccactggccagagaGAaaatttcagagcttggtagccttgaggacattagtgatacagcgatgcagcaaactgaagggattctcgccacaagctcttgccacgtctggagtcactatcaatacatga
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| Protein seq | MGELVTSMVIGPLVRMVKEKASSYLLEQYKAWKCSTRSSSASCRAILDVISDAEKQASEHREGAKAWLEELKAVAYEANEVFDEFKYEALRREAKKNGHYTKLGIDAVKLFPTHNRVVFRYKMGRKLCRIVQNIEVLIAEMNAFGFKFEPQSIESKEWRLTDSDIFDPMNIASRSRDEDKKLLVSILLSQASNVKLTVLPIVGMGGLGKTTLAKLIYNEPEIQNHFQLMIWVCVSDNFDVASVARSIVDAVPKKGDKVTINENQTSALDELQKLVSGQRYLLVLDDVWNRDDEKWRKLKKCLEHGSTGSAVLATTREGGVAELMHTTDAYNLTALNNSVIKEIIDTAAFRPKKEIKPAELVEMDDKSLLSKKKEMIDQFVERCAGLPLAAKALGSVLYTKTSLEEWEAVLRSSSICTKETGILPILKLSYDNLPALLSVLFFLNYEIDKDKLVQLWIANGLIPEIKDIRLETTGEGIFNELASRSFFQELKRVRFDKYRSNHGHCSRIICKMHDLMHDVATSIMGKECITKYPTERGSYSSATRHLLLSCDDPDNVMNDYLKKESPAIQTLLCDEPIFTSSSLQHSAKYRAVRALKLDQCRSLFLLQPKHLHHLSDLYRLPKQMKYMTALCHLHTHGCTSLKHMPPDLGKLTSLQTLTCFVAGTGSGCSNVGELQHLDISGQLELRQMENVNEEDARLMKLENKKLSTLSLVWNENDKEDRSYTNASDCHEKVIEALKPHDELRVLNVKSCKSSSFPSWMGMLKRLVEIDLDNCTMCQNIPQFWQLQDLQVLRLDGFHGLQYLCSIGQNSEIPSTFPKLKELKLTNLKSFNRWWEINERQEKLDFPQLEKLVIKGCGELTSLPTSDSNMSEPALPALKELELCDLNQFERWQAAEGTQDKPPTFPNLENISIVKCPELTSLPEAPKLSVLDIGNGSEQMLLCIPRYMASLSTLRLQHEGEETTPLTERFLIEWVDGKDNQNREYPLPVMKLVGFNVFFRSGAQALWACFAQLKDLVIISCDGLIHWPERKFQSLVALRTLVIQRCSKLKGFSPQALATSGVTINT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.450483 | 13.827340 | 2.097510 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0359400 | RBH | 3.238470 | 3.318137 | 7.733653 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g25720 | RBH | 1.926517 | 1.888892 | 1.677886 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0359400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016750 | RBH | 2.686067 | 8.307322 | 7.161385 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0016390 | SBH | 0.000000 | 0.564667 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0016640 | SBH | 3.956863 | 7.882003 | 12.720966 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0016120 | SBH | 0.135866 | 0.094207 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0016160 | RBH | 13.021174 | 11.335726 | 24.833338 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0246300 | RBH | 10.1699405 | 25.732087 | 2.949927 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0016220 | SBH | 0.074638 | 0.082488 | 0.379317 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0241300 | RBH | 3.65888 | 4.404012 | 0.3359725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0016110 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0016100 | RBH | 1.599070 | 13.897045 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0016320 | RBH | 17.886503 | 31.724052 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0016190 | SBH | 0.025718 | 0.193050 | 0.041479 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0015960 | RBH | 0.030707 | 0.714120 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G016380 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
