Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0016110 | OGI:01044920 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:14924557-14926941 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaatgttgacccacgccgaatatggacttaagctcagggcaacgtcgtatgtgcaaatacttgagagatggtggggtgttgaagacctctaccaaacttttacactcaattattgttagtgactccagacgtgttaggagttggcctccacctgatgttgaccgctcaggagcttgtgcgtatcccttcagtttgttgcagctcactatccctaatgtcttcaaggataccaagccctgaaattctttctccggccagtggatgagcacatcgcatctacaaattctcaaaactataagctgtgcaaaacatgtccatagtgcatgtgcaccagaaaggaagaacatgttgaagttatctaggcgcatatctgccagaggggattcacctttccaattctcattgtcgtccacccactcaatcaaattgtgttcagctggaggcgctgtttctacacgtccctgcagcaagctcagagtggacaatgaagtaatgtatctcggtatgcaaaagagcaactgttgggagcccttcgttatgtgtaaaacactaagctttcgtgcttcaggtagacttgccaactttggacaatccctaatacgaatgttctcaaggttagggaacattggtgttttgacatgtgttgcttccacctgttgccatctgtcgattttatttaactcaatgagttggagctcctgtggaaaatttggcagcgcagttggtgtcttattgttgtcgttgtcacaactcggctgttcttgcctctcagttttgtcccaccatCccttgaaactcttcagattttctagtgtgagctctttcaattttggaaatattgaacatgtcgtgctgttctcaccaatgctacacaaatattgcaatctatcaaatccagccagtcgaagaagttggaggtactgcagctgccacaactgcggaatattttcgcaccttgtataactagtactgagatcaagctctctaagaccttctaacatactgacccatgatggtaatgttgtacctttgtaggaggccaccttcagaaccaacagattatcatgaggtcgtagagcttccatcaccttgttatgactagaatctgctgtttcattgcgaggttcttcattgtcccatactaaagacaattccatgattttccttttgctgtcaagcttggtatgtattgcatctgactctcttacattctgtagctggtgtagctctaggtgaccgccaatgtctaatttctgcagctctccaacattactgcatttagagccagaacccactttaaaacaagtgagtgtctgtagggaagtgagttttctgaaatccggaggcatgtgcttcaaattcaaacaaccatgagtgtagaggtgacggagcgaagtcatgtacttcatttgtttaggaagtcgacggaggcaataacaatcagataggtttaacgtttgtaaactatatagaatgcttatttctccgggaagtgcttttatataagtatttgagagatccaggtaccttagatgatgtagaatctttggttttagttggatcaaccgcatctctttactcagtttcaatgctcgcacagagctatattttgccaaatgctgaaattgtctatcaacaagtacatcacatagaagtgtttggacagattgacacctcttcttcatataatcattcaacgtagtgtcaggctcattagatgacaaaagtatatggcggacagtacttggaaaaaactccttttgactaggattttcagttatgctaaaacattcgtttcccataacagatagcgcaacatcgtgcatcaaatcgtgtatcctacataaccttctataacaattcccatgtttgcttccatattcctgaaatgggacttgtttcatgtcttggaagaatgaccttgaggccaactcatggaaaatatagtttccaatggtttctagagggacatttttttcgtctgggataaagccattggccatccatacgtggattagattgtctacgtcaatcacataatctttgggaaacatagcacagaaagcaaagcattgtttcatgtatgagggcaagtcatcatagctgagcttgagtatatgtaaaattccagtctcctcattgcatatactgcttctcattaatatggcctgccattcttgcacagtttccttggtacgaagtagagagcctagtgctgttacggctaatggagatccaacacatctgttgacaaacttatcaatcatttcaacttgctcattaggcttttcatcctttctcaaactaaatgctctcgtgtcaatgatttccttgataatgctgttctccagagcagtaaggttatatgcatcagttgtctgcat
More
|
||||||||||
| CDS seq | atgcagacaactgatgcatataaccttactgctctggagaacagcattatcaaggaaatcattgacacgagagcatttagtttgagaaaggatgaaaagcctaatgagcaagttgaaatgattgataagtttgtcaacagatgtgttggatctccattagccgtaacagcactaggctctctacttcgtaccaaggaaactgtgcaagaatggcaggccatattaatgagaagcagtatatgcaatgaggagactggaattttacatatactcaagctcagctatgatgacttgccctcatacatgaaacaatgctttgctttctgtgctatgtttcccaaagattatgtgattgacgtagacaatctaatccacgtatggatggccaatggctttatcccagacgaaaaaaatgtccctctagaaaccattggaaactatattttccatgagttggcctcaaggtcattcttccaagacatgaaacaagtcccatttcaggaatatggaagcaaacatgggaattgttatagaaggttatgtaggatacacgatttgatgcacgatgttgcgctatctgttatgggaaacgaatgttttagcataactgaaaatcctagtcaaaaggagttttttccaagtactgtccgccatatacttttgtcatctaatgagcctgacactacgttgaatgattatatgaagaagaggtgtcaatctgtccaaacacttctatgtgatgtacttgttgatagacaatttcagcatttggcaaaatatagctctgtgcgagcattgaaactgagtaaagagatgcggttgatccaactaaaaccaaagattctacatcatctaaggtacctggatctctcaaatacttatataaaagcacttcccggagaaataagcattctatatagtttacaaacgttaaacctatctgattgttattgcctccgtcgacttcctaaacaaatgaagtacatgacttcgctccgtcacctctacactcatggttgtttgaatttgaagcacatgcctccggatttcagaaaactcacttccctacagacactcacttgttttaaagtgggttctggctctaaatgcagtaatgttggagagctgcagaaattagacattggcggtcacctagagctacaccagctacagaatgtaagagagtcagatgcaatacataccaagcttgacagcaaaaggaaaatcatggaattgtctttagtatgggacaatgaagaacctcgcaatgaaacagcagattctagtcataacaaggtgatggaagctctacgacctcatgataatctgttggttctgaaggtggcctcctacaaaggtacaacattaccatcatgggtcagtatgttagaaggtcttagagagcttgatctcagtactagttatacaaggtgcgaaaatattccgcagttgtggcagctgcagtacctccaacttcttcgactggctggatttgatagattgcaatatttgtgtagcattggtgagaacagcacgacatgttcaatatttccaaaattgaaagagctcacactagaaaatctgaagagtttcaaggGatggtgggacaaaactgagaggcaagaacagccgagttgtgacaacgacaacaataagacaccaactgcgctgccaaattttccacaggagctccaactcattgagttaaataaaatcgacagatggcaacaggtggaagcaacacatgtcaaaacaccaatgttccctaaccttgagaacattcgtattagggattgtccaaagttggcaagtctacctgaagcacgaaagcttagtgttttacacataacgaagggctcccaacagttgctcttttgcataccgagatacattacttcattgtccactctgagcttgctgcagggacgtgtagaaacagcgcctccagctgaacacaatttgattgagtgggtggacgacaatgagaattggaaaggtgaatcccctctggcagatatgcgcctagataacttcaacatgttcttcctttctggtgcacatgcactatggacatgttttgcacagcttatagttttgagaatttgtagatgcgatgtgctcatccactggccggagaaagaatttcagggcttggtatccttgaagacattagggatagtgagctgcaacaaactgaagggatacgcacaagctcctgagcggtcaacatcaggtggaggccaactcctaacacgtctggagtcactaacaataattgagtgtaaaagtttggtagaggtcttcaacaccccaccatctctcaagtatttgcacatacgacgttgccctgagcttaagtccatattcggcgtgggtcaacattaa
More
|
||||||||||
| Protein seq | MQTTDAYNLTALENSIIKEIIDTRAFSLRKDEKPNEQVEMIDKFVNRCVGSPLAVTALGSLLRTKETVQEWQAILMRSSICNEETGILHILKLSYDDLPSYMKQCFAFCAMFPKDYVIDVDNLIHVWMANGFIPDEKNVPLETIGNYIFHELASRSFFQDMKQVPFQEYGSKHGNCYRRLCRIHDLMHDVALSVMGNECFSITENPSQKEFFPSTVRHILLSSNEPDTTLNDYMKKRCQSVQTLLCDVLVDRQFQHLAKYSSVRALKLSKEMRLIQLKPKILHHLRYLDLSNTYIKALPGEISILYSLQTLNLSDCYCLRRLPKQMKYMTSLRHLYTHGCLNLKHMPPDFRKLTSLQTLTCFKVGSGSKCSNVGELQKLDIGGHLELHQLQNVRESDAIHTKLDSKRKIMELSLVWDNEEPRNETADSSHNKVMEALRPHDNLLVLKVASYKGTTLPSWVSMLEGLRELDLSTSYTRCENIPQLWQLQYLQLLRLAGFDRLQYLCSIGENSTTCSIFPKLKELTLENLKSFKGWWDKTERQEQPSCDNDNNKTPTALPNFPQELQLIELNKIDRWQQVEATHVKTPMFPNLENIRIRDCPKLASLPEARKLSVLHITKGSQQLLFCIPRYITSLSTLSLLQGRVETAPPAEHNLIEWVDDNENWKGESPLADMRLDNFNMFFLSGAHALWTCFAQLIVLRICRCDVLIHWPEKEFQGLVSLKTLGIVSCNKLKGYAQAPERSTSGGGQLLTRLESLTIIECKSLVEVFNTPPSLKYLHIRRCPELKSIFGVGQH |
||||||||||
| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0016110 | OsLima_01g0016110.01 | Chr01 | 14924557 | 14926941 | - | NAM | ||
| CDS seq | atgcagacaactgatgcatataaccttactgctctggagaacagcattatcaaggaaatcattgacacgagagcatttagtttgagaaaggatgaaaagcctaatgagcaagttgaaatgattgataagtttgtcaacagatgtgttggatctccattagccgtaacagcactaggctctctacttcgtaccaaggaaactgtgcaagaatggcaggccatattaatgagaagcagtatatgcaatgaggagactggaattttacatatactcaagctcagctatgatgacttgccctcatacatgaaacaatgctttgctttctgtgctatgtttcccaaagattatgtgattgacgtagacaatctaatccacgtatggatggccaatggctttatcccagacgaaaaaaatgtccctctagaaaccattggaaactatattttccatgagttggcctcaaggtcattcttccaagacatgaaacaagtcccatttcaggaatatggaagcaaacatgggaattgttatagaaggttatgtaggatacacgatttgatgcacgatgttgcgctatctgttatgggaaacgaatgttttagcataactgaaaatcctagtcaaaaggagttttttccaagtactgtccgccatatacttttgtcatctaatgagcctgacactacgttgaatgattatatgaagaagaggtgtcaatctgtccaaacacttctatgtgatgtacttgttgatagacaatttcagcatttggcaaaatatagctctgtgcgagcattgaaactgagtaaagagatgcggttgatccaactaaaaccaaagattctacatcatctaaggtacctggatctctcaaatacttatataaaagcacttcccggagaaataagcattctatatagtttacaaacgttaaacctatctgattgttattgcctccgtcgacttcctaaacaaatgaagtacatgacttcgctccgtcacctctacactcatggttgtttgaatttgaagcacatgcctccggatttcagaaaactcacttccctacagacactcacttgttttaaagtgggttctggctctaaatgcagtaatgttggagagctgcagaaattagacattggcggtcacctagagctacaccagctacagaatgtaagagagtcagatgcaatacataccaagcttgacagcaaaaggaaaatcatggaattgtctttagtatgggacaatgaagaacctcgcaatgaaacagcagattctagtcataacaaggtgatggaagctctacgacctcatgataatctgttggttctgaaggtggcctcctacaaaggtacaacattaccatcatgggtcagtatgttagaaggtcttagagagcttgatctcagtactagttatacaaggtgcgaaaatattccgcagttgtggcagctgcagtacctccaacttcttcgactggctggatttgatagattgcaatatttgtgtagcattggtgagaacagcacgacatgttcaatatttccaaaattgaaagagctcacactagaaaatctgaagagtttcaaggGatggtgggacaaaactgagaggcaagaacagccgagttgtgacaacgacaacaataagacaccaactgcgctgccaaattttccacaggagctccaactcattgagttaaataaaatcgacagatggcaacaggtggaagcaacacatgtcaaaacaccaatgttccctaaccttgagaacattcgtattagggattgtccaaagttggcaagtctacctgaagcacgaaagcttagtgttttacacataacgaagggctcccaacagttgctcttttgcataccgagatacattacttcattgtccactctgagcttgctgcagggacgtgtagaaacagcgcctccagctgaacacaatttgattgagtgggtggacgacaatgagaattggaaaggtgaatcccctctggcagatatgcgcctagataacttcaacatgttcttcctttctggtgcacatgcactatggacatgttttgcacagcttatagttttgagaatttgtagatgcgatgtgctcatccactggccggagaaagaatttcagggcttggtatccttgaagacattagggatagtgagctgcaacaaactgaagggatacgcacaagctcctgagcggtcaacatcaggtggaggccaactcctaacacgtctggagtcactaacaataattgagtgtaaaagtttggtagaggtcttcaacaccccaccatctctcaagtatttgcacatacgacgttgccctgagcttaagtccatattcggcgtgggtcaacattaa
More
|
|||||||
| Protein seq | MQTTDAYNLTALENSIIKEIIDTRAFSLRKDEKPNEQVEMIDKFVNRCVGSPLAVTALGSLLRTKETVQEWQAILMRSSICNEETGILHILKLSYDDLPSYMKQCFAFCAMFPKDYVIDVDNLIHVWMANGFIPDEKNVPLETIGNYIFHELASRSFFQDMKQVPFQEYGSKHGNCYRRLCRIHDLMHDVALSVMGNECFSITENPSQKEFFPSTVRHILLSSNEPDTTLNDYMKKRCQSVQTLLCDVLVDRQFQHLAKYSSVRALKLSKEMRLIQLKPKILHHLRYLDLSNTYIKALPGEISILYSLQTLNLSDCYCLRRLPKQMKYMTSLRHLYTHGCLNLKHMPPDFRKLTSLQTLTCFKVGSGSKCSNVGELQKLDIGGHLELHQLQNVRESDAIHTKLDSKRKIMELSLVWDNEEPRNETADSSHNKVMEALRPHDNLLVLKVASYKGTTLPSWVSMLEGLRELDLSTSYTRCENIPQLWQLQYLQLLRLAGFDRLQYLCSIGENSTTCSIFPKLKELTLENLKSFKGWWDKTERQEQPSCDNDNNKTPTALPNFPQELQLIELNKIDRWQQVEATHVKTPMFPNLENIRIRDCPKLASLPEARKLSVLHITKGSQQLLFCIPRYITSLSTLSLLQGRVETAPPAEHNLIEWVDDNENWKGESPLADMRLDNFNMFFLSGAHALWTCFAQLIVLRICRCDVLIHWPEKEFQGLVSLKTLGIVSCNKLKGYAQAPERSTSGGGQLLTRLESLTIIECKSLVEVFNTPPSLKYLHIRRCPELKSIFGVGQH
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0359600 | SBH | 2.510630 | 2.269976 | 2.048501 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g25630 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0359800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016740 | RBH | 0.000000 | 0.000000 | 0.332453 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0016390 | RBH | 0.000000 | 0.564667 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0016630 | RBH | 0.000000 | 0.585315 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0016110 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0016150 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0245700 | RBH | 0.043736 | 2.339651 | 0.010261 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0016210 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0241100 | RBH | 1.605176 | 3.048868 | 0.0708815 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0016090 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0016320 | RBH | 17.886503 | 31.724052 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0016170 | SBH | 0.820173 | 0.367919 | 0.316204 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0015950 | RBH | 0.000000 | 0.187829 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G016380 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0016160 | RBH | 0.000000 | 0.0 | 0.0 |
