Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_12G017570 | OGI:12061270 | 3/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr12:22490241-22493765 | ||||||||
| Gene Symbol | MTI4C, MT-1-4b, OsMT1d, MT1d, OsMT-I-4c, MT1c, OsMT1c | ||||||||||
| DNA seq | AATTGCACTAAACTCACCTCAAGCTTTCTCAACACTTCATTGCACACAATTTCCTGAAGAGTTAAACAAGAGACCTAAAAAATCAAGATGTCGTGCGGTGGAAGTTGCAACTGCGGTTTAAGCTGCGGCTGCGGGTACTTTTTTCATATGCTGATTTATCAAAATAAACTGAAATAAGCTTTCAGAAATAGCAGTTACTTCGTTTTGTTGATTTTTTTTTCGCTCAAAAAGTTTGGTTGATTTTAACGTACTTTCCATGATAAAAAAAACATGCTATTTCCATTGCTTCAAAGTTCAAAGTTTGTTCAGATAAAGCTACATGTAAGATGAGAAGAGATTATCACTAATTCATTATCAGTTACTTTACATTCATTTTATGTCCTGCTTTTTTTCTTGGTTCAGAAAGATGTACCCTGATCTGGCAGAGAAGAACACCACCATCACCACCTCAGATACCATGATCCTCGGTGTTGCACCTGAAAAGGGGTATAGCCATCTAGCTTATATTTCATCTTAAAGAAACTGAACTGAAGAATCTCATTAGTACCAGCTGAGCTTCAGATTTGAATCAGACCACAACATTCTTTCTATGCCTGAATTTGTCTGCTTCTTTCTTACGCAGGCGCGGCGAAGCGGTGTTCGAGGCTGCTGCCGGCTCCGGTGAGGCCGACCATGGCTGCAGCTGCGGCTCCAGCTGCAAGTGCAACCCCTGCAACTGCTAAGATCAAGGGATTAGTGACCGTAGCATGCACCAGCATGCCTATCTGTGATGAACAAATAAATAAAATAGGCCATCCAGTGTGATGGGTTCAATCACTGTATGTTTGGCTGTGTGAATTACTGGTCATCATCTTGCCAGTGTGCCCTGTGTAATGTTGTTCAGTGAAATATAAGATGGCTTGTTTATGAATTTTCCTCTCTCATTATCTCTTGTTTTTACCATTCTATGGTAGAAATTACAGATTCCCATTGCTTGGTCAGATGGCTGCTTTACCTGATCTTAGCCTGTTATTATATTAGTGTGGTCTATGTGTATTTCTAAATTCTGTTCATTTGACCTGAAATTTTCACGCTACCATCAGGAAGCCTACCGGAGGGACTGAAATTCCGAAATATCAGAAATTTCAAATGAATAGCATTGAAAATTACTAAATTTGATTTTGTTTGCTAAATTAAAAAAAATCCGTCCGGAAGAACCTCCTACAGGCACCCACGGGTAATAACGAAATTTCAGAAAATTAGATCTGAAATTGTAAACCCTGATACGATGCTGTGAGATATCGATCCCAACAACTTCAAATTCAGTGAGGTATATGTATTTGTGGTTTGATTAAAGGCACGTATTTCAAATTCAGTTGATACATGAACATGTTCAGAGCAGGTTTGATTTGGTCATAAAATCATCAAACTCAAATGCAGTCTAGGTCATGCAATAAATTTAAATTGAATTCGTACAGCAAGTTAATCAAATTTGATGTGTACAAGATATGTTTAAGTACGTGTCTGGTGTAGCTAGCTAGCGCCGTGGATTTGAAGGAACGATGATTTGGTCAGTAGCTTGAGGGATCTGAATTCTTGGCGTATGATAAACTTGAGTTCAAAAAATACAAGACACATCAGTTTTATATTTCAATTCGTGTAAACCATTGAATTCAATTCATGCAAGGGAACTGAATTTGCATATTTCAATTCATACTCTTAGCTCATTTAAATTGACATTTGCACGATGATGAGTGTGCCTTTTGGGGGTGGAACTGGTATAAGTTTGACTTTTGGGGAACTTAATCAAATCCAGCGTGGTTCAAGCAAGAAATTTGAATTCAACTCATACAAGAAACGTATTCAATTTCAAGCTGTGCAATAATGCATCTATCTTAAGCAAAGGGTCTGCATCATAGTACTGATGCATGATTGAAACAGCTAAGAACTTGATCAAATTCAACGGTTTTTCGTGATGAAAGTTTAAATCCAGTTCATACAAGAAACTTATTCAGATTGTTTGATTTAAATATGAGCAACAAGGCGTCGACCTTAAGCAAAGGTTGACATCATGGTGTGAAAGCAAATTTGAACCTGGCCAAAACTTGGATCACATTTGTCCAGAAACTTGGTTCAGATTAACAGTAATTAAAATAATGCAACCTTTGCACGTAAGCAACTACTCCCTCCGTTCCATAAAAAACCAATCTAGTACCAGATGTGACACATCCTAGTATTATGAATCTGGACATACATATGTCCAGATTCATCGTACTAGATTATGTCACATCTAGTATTAGATTCGTTTTTTATGGGACGGAGGGCGTATATAAAAATCGTCAATATTTTTATATTTTAGGGCACTTATCAATACTATCTTCAACTAAGAATGACGCAATTGCACCCCAAACAAATATGCTTTTTTAAAACTCCGGGAAATGCATATAGAAAACTGACGTCAATGAATGATAATGATTTTTCAAGGCCATTTCAACCAGCTACATCTTTCTGGCATGATAATGCTTGAAATAATTGTGCAGCTTATTCTCAAGCGTACTACTACTATAAATAGGGGGGCATATCTGAACTGAGTTCATATCAAGCTTTCAATCTCTCATTTCATCCAACTATACAAGTTCAAGAGTTTACAAGAGACCCAGACGATCAAGATGTCGTGCGGTGGAAGTTGCAACTGCGGTTCCTGCGGATGCGGCGGTGGCTGCGGGTACGTTCGATCTTCAGCTATTGATTCTGAATATGTTTGCTATGTATTTGTCAACATAAACTGTCATAAGCTTTGATGATTTTGATGTACTTTCCATCATAGAAGAATACTATGTTAGCCCCAATAGTTCTGCTTACAATTGATTTGAAGTTATATTCAGTTGAAGCCATCCATAAGACAAAAAAAAAGTTGTCATTTCTAGTTACTGAATTTTGCGTTCTGTTTTTTGTTTTCTTGGTTCAGAAAGATGTACCCTGACCTGGCTGAGAAGATCACCACCACCACCACTACTGCAACCACTGTCCTAGGTGTTGCACCTGAGAAGGGGTATGATATCTCTGAATCTTTTCACTGATAAAAAACTTCACTGAAGTAAAAAAAATCCTACCTGAGATTCAGACATGAACAATATGCTGTGATCTACATCTTTCCATGCCTGAAACTGTTCGTTTCTGAATTTGCCTTGTTGATTTGCAGGCACTCTGAGGGGGTTGGCAAGGCAGCTGAATCTGGCGAGGCTGCCCATGGCTGCAGCTGTGGCTCCAGCTGCAGGTGCAACCCCTGCAACTGCTAAGGCCAAGGCGATCTATGACTGAATTGCCAATGCACCAGCCTGTCTACATGATGAATAAATAAAGAGTCCATCCAGTGTGATGGCTCATGCCTGTGTGAGTGTGACTGAATCCATCAGTGTGTGTGTGTGTTTGTGTCAACCATGTGTGAATCAGGTGTCAAAAATCGTGGCTGGAAATCCATGTGGTTTCTAGCTTTATGTAAATGTTGTTTGTGAAATATAAATATTGTTTTGTGTATGTGAATTT
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| CDS seq | ATGTCGTGCGGTGGAAGTTGCAACTGCGGTTCCTGCGGATGCGGCGGTGGCTGCGGAAAGATGTACCCTGACCTGGCTGAGAAGATCACCACCACCACCACTACTGCAACCACTGTCCTAGGCACTCTGAGGGGGTTGGCAAGGCAGCTGAATCTGGCGAGGCTGCCCATGGCTGCAGCTGTGGCTCCAGCTGCAGGTGCAACCCCTGCAACTGCTAAGGCCAAGGCGATCTATGACTGA |
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| Protein seq | MSCGGSCNCGSCGCGGGCGKMYPDLAEKITTTTTTATTVLGTLRGLARQLNLARLPMAAAVAPAAGATPATAKAKAIYD |
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| Function | Metallothionein-like protein 4A [UniProtKB/Swiss-Prot:Q0IMG5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_12G017570 | OsN22_12G017570_04 | Chr12 | 22492802 | 22493762 | + | NAM | ||
| CDS seq | ATGTCGTGCGGTGGAAGTTGCAACTGCGGTTCCTGCGGATGCGGCGGTGGCTGCGGAAAGATGTACCCTGACCTGGCTGAGAAGATCACCACCACCACCACTACTGCAACCACTGTCCTAGGCACTCTGAGGGGGTTGGCAAGGCAGCTGAATCTGGCGAGGCTGCCCATGGCTGCAGCTGTGGCTCCAGCTGCAGGTGCAACCCCTGCAACTGCTAAGGCCAAGGCGATCTATGACTGA
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| Protein seq | MSCGGSCNCGSCGCGGGCGKMYPDLAEKITTTTTTATTVLGTLRGLARQLNLARLPMAAAVAPAAGATPATAKAKAIYD |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_12G017570 | OsN22_12G017570_03 | Chr12 | 22492802 | 22493765 | + | NAM | ||
| CDS seq | ATGTCGTGCGGTGGAAGTTGCAACTGCGGTTCCTGCGGATGCGGCGGTGGCTGCGGAAAGATGTACCCTGACCTGGCTGAGAAGATCACCACCACCACCACTACTGCAACCACTGTCCTAGGCACTCTGAGGGGGTTGGCAAGGCAGCTGAATCTGGCGAGGCTGCCCATGGCTGCAGCTGTGGCTCCAGCTGCAGGTGCAACCCCTGCAACTGCTAAGGCCAAGGCGATCTATGACTGA
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| Protein seq | MSCGGSCNCGSCGCGGGCGKMYPDLAEKITTTTTTATTVLGTLRGLARQLNLARLPMAAAVAPAAGATPATAKAKAIYD |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_12G017570 | OsN22_12G017570_01 | Chr12 | 22490241 | 22491215 | + | NAM | ||
| CDS seq | ATGTCGTGCGGTGGAAGTTGCAACTGCGGTTTAAGCTGCGGCTGCGGAAAGATGTACCCTGATCTGGCAGAGAAGAACACCACCATCACCACCTCAGATACCATGATCCTCGGTGTTGCACCTGAAAAGGGGCGCGGCGAAGCGGTGTTCGAGGCTGCTGCCGGCTCCGGTGAGGCCGACCATGGCTGCAGCTGCGGCTCCAGCTGCAAGTGCAACCCCTGCAACTGCTAA
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| Protein seq | MSCGGSCNCGLSCGCGKMYPDLAEKNTTITTSDTMILGVAPEKGRGEAVFEAAAGSGEADHGCSCGSSCKCNPCNC |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_12G017570 | OsN22_12G017570_02 | Chr12 | 22490277 | 22493765 | + | NAM | ||
| CDS seq | ATGTCGTGCGGTGGAAGTTGCAACTGCGGTTCCTGCGGATGCGGCGGTGGCTGCGGAAAGATGTACCCTGACCTGGCTGAGAAGATCACCACCACCACCACTACTGCAACCACTGTCCTAGGCACTCTGAGGGGGTTGGCAAGGCAGCTGAATCTGGCGAGGCTGCCCATGGCTGCAGCTGTGGCTCCAGCTGCAGGTGCAACCCCTGCAACTGCTAAGGCCAAGGCGATCTATGACTGA
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| Protein seq | MSCGGSCNCGSCGCGGGCGKMYPDLAEKITTTTTTATTVLGTLRGLARQLNLARLPMAAAVAPAAGATPATAKAKAIYD |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_12G017570 | OsN22_12G017570_05 | Chr12 | 22492815 | 22493760 | + | IsoSeq | ||
| CDS seq | TATCAAGCTTTCAATCTCTCATTTCATCCAACTATACAAGTTCAAGAGTTTACAAGAGACCCAGACGATCAAGATGTCGTGCGGTGGAAGTTGCAACTGCGGTTCCTGCGGATGCGGCGGTGGCTGCGGAAAGATGTA |
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| Protein seq | YQAFNLSFHPTIQVQEFTRDPDDQDVVRWKLQLRFLRMRRWLRKDV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr12 | 22493252 | 22493422 | + | OsN22_12G017570_05 | OsN22_12G017570_04,OsN22_12G017570_02,OsN22_12G017570_03,OsN22_12G017570_05 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 28.793413 | 3.902699 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0570700 | SBH | 13.918349 | 7.189314 | 11.433779 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g38300 | RBH | 0.000000 | 0.0 | 0.471628 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0571000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0018430 | SBH | 8.020730 | 469.894287 | 4.541850 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017740 | SBH | 0.0 | 1.025041 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0311900 | RBH | 0.289499 | 483.242706 | 11.2210135 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0017190 | SBH | 1.500923 | 58.490971 | 3.567671 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0342800 | SBH | 0.715797 | 16.606123 | 0.221199 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017410 | SBH | 2.498048 | 14.331139 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0017640 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0017230 | SBH | 0.0 | 113.367744 | 0.0 |
