Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0570700 | OGI:12060770 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:23501423-23502359 | ||||||||
| Gene Symbol | MT1F, OsMT1f, OsMT1c, MT1f, MT1c, MT1Lb, OsMT1Lb, MTI4A, OsMT1a, OsMT1a1, OsMT1a2, OsMT-I-4a, OsIDS1, OsMT1b, MT1b, MTI4C, MT-1-4b, OsMT1d, MT1d, OsMT-I-4c, MT1c, OsMT1c | ||||||||||
| DNA seq | GCACTCATCTCAAGCTTTTCTCTCTCTCTCTCTCTTTGCACTACATTCTTGAATTCACAACCTACAAACAATCCAAGAAGATGTCTTGCTGCGGAGGAAGCTGCAACTGTGGCTCTAGCTGCAAGTGCGGCAGCGGCTGCGGGTATGATTTTAATGTCTCATTCTCTAGTCTGATTCATCATTTTGTTTGTCTGAAGTTTCAGAGTTTTATAAGTAAATAAACAAATAATTGAAATTGGATAAAGTTCCTAGTATAGTGTCATGCCAAATCCATGCAATCTGTGAAACAATTAAACGAATATGTTTTTTTTCTTTAACTCAATTCTTGTTCTTATAGGTACTGAACATTTGCTGCTTCTTTTCTTTGATGCAGAAACATGTACCCTGACCTGGCAGAGAAGACCACAAACACTTCAGCAACTATGGTCCTCGGGGTCGCACCTGCGAAGGAGTACAACCTCTCACCATGATCTATATGTTCAATTATTTAGAGAGAATTTTCTGGAACTCTTCAAAATGTCATGTTTCATGCTGATTTTGGTTTTGTTTCTTTGCAGGCAATTTGAGGGGGTTGGCAAGGCAGCAGAGTCTGGTGAGGCTGCCCATGGCTGCAGCTGTGGCTCCAGCTGCAAATGCAATCCCTGCAACTGCTAAAGGAGATGGTGATCTGCATCAGCATGCTGATGATATGTACAAGTAAATAAAGAAGCCATTTGATGCAATGGCTCCTGTGTGTGTGTGTGTGCGACAGTGTGAGTCAGCTTGTGTTCTTCATCCTGATGTACTAATGTGGCCTGTGAATATTGTGAGGTGTCTCCTGCTTTACTCTCTTGTCAGAATGTAATTAGAGGCTATATATCATGGCCTTGTGATTGGAGCACCTGAAGTTTTTACAGACAACATTATGTTTGTGTAATATAATATGGTTTACTTGTGC
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| CDS seq | ATGTCTTGCTGCGGAGGAAGCTGCAACTGTGGCTCTAGCTGCAAGTGCGGCAGCGGCTGCGGAAACATGTACCCTGACCTGGCAGAGAAGACCACAAACACTTCAGCAACTATGGTCCTCGGGGTCGCACCTGCGAAGGAGCAATTTGAGGGGGTTGGCAAGGCAGCAGAGTCTGGTGAGGCTGCCCATGGCTGCAGCTGTGGCTCCAGCTGCAAATGCAATCCCTGCAACTGCTAA |
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| Protein seq | MSCCGGSCNCGSSCKCGSGCGNMYPDLAEKTTNTSATMVLGVAPAKEQFEGVGKAAESGEAAHGCSCGSSCKCNPCNC |
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| Function | Metallothionein-like protein 4A [UniProtKB/Swiss-Prot:Q0IMG5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0570700 | OsNip_12t0570700-01 | Chr12 | 23501423 | 23502359 | + | RAP2018-11-26 | ||
| CDS seq | ATGTCTTGCTGCGGAGGAAGCTGCAACTGTGGCTCTAGCTGCAAGTGCGGCAGCGGCTGCGGAAACATGTACCCTGACCTGGCAGAGAAGACCACAAACACTTCAGCAACTATGGTCCTCGGGGTCGCACCTGCGAAGGAGCAATTTGAGGGGGTTGGCAAGGCAGCAGAGTCTGGTGAGGCTGCCCATGGCTGCAGCTGTGGCTCCAGCTGCAAATGCAATCCCTGCAACTGCTAA
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| Protein seq | MSCCGGSCNCGSSCKCGSGCGNMYPDLAEKTTNTSATMVLGVAPAKEQFEGVGKAAESGEAAHGCSCGSSCKCNPCNC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 13.918349 | 7.189314 | 11.433779 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g38270 | RBH | 8.173149 | 4.213085 | 2.560545 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0570700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0017750 | SBH | 0.0 | 972.047729 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0018050 | SBH | 0.0 | 290.725464 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0018430 | RBH | 8.020730 | 469.894287 | 4.541850 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017730 | RBH | 0.309281 | 3.519131 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0017320 | SBH | 0.0 | 366.949188 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0311400 | RBH | 88.1580355 | 650.037262 | 3.149448 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0017190 | RBH | 1.500923 | 58.490971 | 3.567671 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0342500 | RBH | 237.72081 | 89.094791 | 4.691232 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017410 | RBH | 2.498048 | 14.331139 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0017530 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0017610 | SBH | 0.0 | 1179.054321 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0017630 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0017800 | SBH | 0.0 | 136.400162 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G017410 | SBH | 0.0 | 1.020206 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0017220 | RBH | 7.552095 | 410.233856 | 12.962114 |
