Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_12G012560 | OGI:12046870 | 1/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr12:16863614-16869176 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGATCGCTGTGAAATCTAGACAAAAGGAATTGGAATCTGCTCAAGAAAAAAACACCATGGGAAATCCTACAATCTCAACAACCAAGGATTTCTCATCAGAAAAGCAGATCGAAAAATCTATTCAGATGGAAGAGAGCACAAACCCTAGAGCAAACTTGTCTTCTGCAGGTAAGAATCTTACAAACCTTACAGCTATATGACATCCAGATCTGTTTTATGTTCTTCTCCATGACATATATGCAAGTCGCATCCCCCACACATACTCCTTTCATCTTAACACAGTATGCTTCTCACCAAAGTCACCTAGATCTGGAAAATGAATATGCTGATCAGATCAAGCTTGTTGCATTAATAAATTAGATTAGTGAAAAACTACTGACAAACCAAAATACAAACATCACTATACAGGAGAAGCACTACTGATGAATAATGTATACAACAATCAACTACTAAAAACAATTCCATTTTTCAGCTTACTTTTTGAAATTTTCTTACTTCACTATTCACCTAATACTACACCACCCCCAATCACCCCAATCCACCATACAGTAAGACATTTTGCCCAAAATTTCAACATTATGAAAGTTTAGAGTTTGCTAATGCTATAAAAACAAACTCCTCAAAAAATTACAATCACCTAATACTAAAATTACATTTGTAAGTTTAGTCTGTATGCAATGTAAATTGAGATAAAACACAACAATAGGGATGCTTTCAAGTACAAAGTACAGTAGATACTGTCAATTGTGTTTCACTGTCCAAAATTTTTACATCCTACCAAAAAAAAAATGCCCAAGTTACACAGTAAACTACTAACCTAGCTAAAAATAAACTTAAAAAAGGAGAAAATTACATTCGCCATAGATGAAAATTACGTTTGTAATTTCAATATTAAATCAATGTAAGTTCAGGAAAAATAGTGTAAATCTACACCAAACTTGAATACAATTATAAAACTACTTCATTCCAAAGAAATTATACATGTCAACTATAAAACTTCTTCAACAAAATTTCAACTAACAAATTTCTCTATGTTATTTTTGAACTTCAATTTAAACGACAAACTGCAAGAGCACTGCTCTCTATTGAACTAATATAGGGCGTATTTATACTTCATACGACATAAGAGTTAAGAAAAAACAGTCAGAAAAAACAGTCAGAATTCAATATTTCATTAGCATATGCAAACTAACGTGACAAAGCACATCGACACAGCATAACCTGTTGATGAGACATATCAAAATAAATTTTACCTAGAAATAGGACAACACAAAATTTACGGTCAAATATAATAAAAATTACATATGTAACTAGGATGTAAGTAGGGTATAACTAGGATGTAACTAGTGTGTAAGTAGGATGTAACTAGGATGTAACTAGTTTGTAAGTAGGGTGTAAGTATGATAAAAAATACATTTACCTGTTACTAAAATTACATTTGTAGTTTCTATGTATAACTAATGTAAGAGAACAAACTGCAAGAGCATAGCTATATTTATGGCGCCATATTTTGTACCAAAAAATAATCGGCATGTATTTACATTGTAAGTTCCTAAATTACATATGTAATTTTAGTGTATTCACAATGTAAATATCCAAAATTACATATGTAAATCCTAAAATTACATACGTAAATATTAAAATTACATATGTAAATAGAGTGTAAGTAGGGTGTAATTTTACATGTAGATAGCAAAAGGAGCGTGATAGATTGGATAAATCACAGCAAGCAGCACAGGTGCATGTGTATATAGTATGAACTAGTGCTTGCACGCACGATGGCAAAGCAGTCCTGCACGAATCTAAACGAAACTTTGAGGGCTAACAAACTAACTGTAATTAGAGAAGATTTATGGCGATATAACTATAGCAAAACCGTATTTTTTAACTTCAATTTGAACTACTATATTCATATCAATGAAGAAAACAGAAAATTACATTTACCTACAACTAAAATTACATTTGTATAGTCAATGTATAACTAATGTAAGAGAACAAACTGCAAGAGCAGCACACATAGCTCACAATTAAACTACAGAACACACTACCTTAAACTAGTAATAATCAAACGAAATTAACAAAACAAAATTCACAGTTCATAAAACAAACCTAGACTAATTTACTATATATAATTCGGTAGAATTACATTGACCTACCGTGTAAATTACATTTGTAATTTCAATATAATGTCAATATAAGTTCCAATGAAACAAATTTAATGCATTTCAAAAACAAGGAGATTGGTTGGTGAGTCTATAAAAAACTAGTATTTAAATAATAAATAAAATTACATTGGTCTATAACTGAATTTACATTTGTAAATTTCTTGTTTTTGTTATGTAAGTTTTTTTAAAAAATGTAGTTCAAACAACAAGTGCCAATTTGGGAGATAGAAACTAGACAACATATAAATCACAGTGCACCAGGCTATATGAACAAATTCTGGGAAATAATAACACAACTGAAATTTTATTTGATAGAAAAATGATAAAATTATAAAACTACAACTAACATTTTTTCTTATCAAAATGCAGGTACCAATTCTCCAGAAATAGCTTATGGGGGACAGATGTTACATGAAGAGTATGCGTTGCTAAGCTCGCAAACAGAGCTGGTGAGAGAAAAATAATTAGTTGGACATAGTGATAACAGTCTTTATTATTATGTTGCTAATAAATTTAATGTTGAAATTTATGCAGGGACAACAAATGAGCTACACAGCGCTGATGCAACAAGTTATTCAAAGTCAAAGTCCTAAGATAAACTTGCATACCAATCAGGTGACAAGAAGCAAATCATAACTTTTTTGTAAAAGCAATCAGCGCTGAAATGAAAAGTTTCATGTTAAACTAATAAATTTTCTGGACAAAAAAAATGCAGGGAAGGCTTGCTGAAATGAACTATCACCTTCAATCACCAATAGGATACAGTGTAAGTTGGATAAAACTCTTAACTTGCTATTTGAACAACAAATTGGACATAACTATATTACTGTATTTCCAATTGTAACACACTATTTATTTTGTCTTCCATACAAAACTCAATGATTCTCACAACAAACAGATGTATTGATAACTTTGATCAAGCAGTTCTTGAAGCAGAACAAGAAGTGCAGGTATAGTAAGATAATTAACACAAAATATTAAAACAAAAAAGCAAAAAAATCTTGTTTCTTACACATGCTCCCACTTGTTCATGCAGATGCCTTTTGAAGACCAATGCATGGAAAATAATATAGAGAAAATATATAACAATAACAATGACAATCGCTATGTATGTGTTTTGTTAGTTTATAATATGTTTTTATTTTTATTTGTATGTATGGGAATGCTTTTTTTATTACAATAGAAAACAAAAATTAAGAGAACAAGTTGATTTTGCAGCACATACACAATATTGAGTCGGTGAGCAACTCTATTGGAGAGTGCTCCAATGTGAATCAGTGGTTATTGGAGGAACATGAAGACAATTGGGGCAATGAGGTTACTTTAGAACAAATGTTCATTTTTTTGTTATTATACTGTACAATAAAAATAATGTTTATTTACTACTTAACATCCAAGTGCGACTACTAACACATAATATGAAATATTTTTTAAAAATTCAGGTACAAATTACTAGCACAGAAAATTCAGCACTTGAGCAAGTAAATGGTGCAGAGCAAGCTGGCATAGCTTCTACAGAAGATAATGCAGAAATGACAGACAAAGAAAATAAAGAAAGTGCAGCAGATGAAGAGGAAGCTGACAATGATGAGATAGATAGCCGTCATATACCTTGTGAAGGGATGCAATTCAAGACTGATGATGAAGCATACAAATTCTTCAACTTCTATGCTTATTTAAGCGGATTCTCCATTGTGATTGCCCACAGCTTGAAGACCAGTGACAAGAAAAGGAACAATAAGTCATCAAATACACATACAAATACAACAGGCATGGAAAAAATCAGGACAATGCAACCAACCAAGTTCAGAAAAAGAAAGGGACAAGAAATACAAATGTTCTAGTGAGAACTGATTGCAAATGTGTGATGGTTGTTAGAGAAAATAATGGCATATGGAGTGTTATAAGACTAGATCTCAATCACAACCACAATCTTTGCCCCCCAGAAGAGAGAAAATTCCTCTACTCACACAAAGACATGACACAGGAAGAGAAGAGCTTAATTCTAACACTAAAAGAATGTAACATACCAACACGAAGCATGGTGGTGTTACTGGCATCACTCCGTGGAGGGTTATCATCGCTGCCATATACAAAGAAAGACATCAGCAACGTCGCTTCATCAAGTAATTCAGAAACAAAGAACAAGGACATGAGTTAAGTCTTGCGGTATTTAAGGAAAAAAGAAGTAGAAGATCCAGGTTTTTACTACAAGCTGAAGCTAGATGAGAATAACAAAGTAACAAACATGTTTTGGACAGATGGCAGATGTAGGTATTTATATGAGCAGTTTAGAGATTTTGTGAGTTTTGATACAACCTACAAGACAAACCGATATGATTTGCCATTTGCACCTTTTGTTGGTATGGCAGGACACGCAAATACATGCATATTTGGTTGTGCATTCCTTGAAGATGAGACAATAGAGACTTTCAAGTGGGTCTTTGAGACATTTATAACAGCAATGGGTGGGAAGGAGCCACGAAGCATAATTACTGATCAAGATAATGCTATGAGATCTGCAATAGCACAAGTATTCAAAAGGACCAAACATAGAAATTGCCTATTTCACATCATGAAAAATTGCAGGGAAAAAACTGGCACCACATTCACTATTACAAGCAAAACAGATGAAACAAAGAAGCAGCTATACAAAGATTTTGATGATATTGTGCACAATTGTCTGACTGAGCAAGAGTTTGAAACTCTTTGGCCACAAATGATTGAGAAATATAACCTGCAGAATGTGAAATATTTACAGCTAATTTTTAAAGCAAGGGCAACATGTATCCCTGTATACTTCAAGAATGATTGGTTCCCATTTATCCATAGCACAACTCTAAGTGAAGGAACAAATACAAGGTACAAACAAGAGGTGGGCCCAAGACACAGTGTCAGTAGTTTCCTAAAGGAGCATGATAGAATCAATGACATAATACTTGAAACACAGCACATCAATGACCATAAATCAAATACTAAAAGACCAAAAGAGTTTTGGTCAGATTACTGCATAGAAGAACAGGCGTGTAAACTATACAACTCAGCAATCTTCGAAAGATTCCAATTAGAGCTAGAGAAGACATTAATGCTACAAACATCAATCATAGAAGAAGGCAAGACATATTTGGTGTTTGCTGCAACAAACCAAACAAGACAAGAATGGAGGCCAAGAAAGTATGTGGTTATGATAGACTTACCAAATGAAGATTTCAGCTGCATTTGTGCTAAGTTTTCAAAGGATGGAATTCTCTGTTGTCATGTCCTGAAAATAATGTTACAACTAAATGTTCAGAAGATTCCAGACAAATACATCATTGATAGGTGGAGGAAAAGAGAGAAAAAAATAGCCACAATTTTGAAAGATTTACATACAATGGAGATAATTCAGCTTTAA
More
|
||||||||||
| CDS seq | ATGGAGATCGCTGTGAAATCTAGACAAAAGGAATTGGAATCTGCTCAAGAAAAAAACACCATGGGAAATCCTACAATCTCAACAACCAAGGATTTCTCATCAGAAAAGCAGATCGAAAAATCTATTCAGATGGAAGAGAGCACAAACCCTAGAGCAAACTTGTCTTCTGCAGGTACCAATTCTCCAGAAATAGCTTATGGGGGACAGATGTTACATGAAGAGTATGCGTTGCTAAGCTCGCAAACAGAGCTGGGACAACAAATGAGCTACACAGCGCTGATGCAACAAGTTATTCAAAGTCAAAGTCCTAAGATAAACTTGCATACCAATCAGGGAAGGCTTGCTGAAATGAACTATCACCTTCAATCACCAATAGGATACAGTGTACAAATTACTAGCACAGAAAATTCAGCACTTGAGCAAGTAAATGGTGCAGAGCAAGCTGGCATAGCTTCTACAGAAGATAATGCAGAAATGACAGACAAAGAAAATAAAGAAAGTGCAGCAGATGAAGAGGAAGCTGACAATGATGAGATAGATAGCCGTCATATACCTTGTGAAGGGATGCAATTCAAGACTGATGATGAAGCATACAAATTCTTCAACTTCTATGCTTATTTAAGCGGATTCTCCATTGTGATTGCCCACAGCTTGAAGACCAGTGACAAGAAAAGGAACAATAAGCATGGAAAAAATCAGGACAATGCAACCAACCAAGTTCAGAAAAAGAAAGGGACAAGAAATACAAATGTTCTAGTGAGAACTGATTGCAAATGTGTGATGGTTGTTAGAGAAAATAATGGCATATGGAGTGTTATAAGACTAGATCTCAATCACAACCACAATCTTTGCCCCCCAGAAGAGAGAAAATTCCTCTACTCACACAAAGACATGACACAGGAAGAGAAGAGCTTAATTCTAACACTAAAAGAATGTAACATACCAACACGAAGCATGGTGGTGTTACTGGCATCACTCCGTGGAGGGTTATCATCGCTGCCATATACAAAGAAAGACATCAGCAACCTAATTTTTAAAGCAAGGGCAACATGTATCCCTGTATACTTCAAGAATGATTGGTTCCCATTTATCCATAGCACAACTCTAAGTGAAGGAACAAATACAAGGTACAAACAAGAGGTGGGCCCAAGACACAGTGTCAGTAGTTTCCTAAAGGAGCATGATAGAATCAATGACATAATACTTGAAACACAGCACATCAATGACCATAAATCAAATACTAAAAGACCAAAAGAGTTTTGGTCAGATTACTGCATAGAAGAACAGGCGTGTAAACTATACAACTCAGCAATCTTCGAAAGATTCCAATTAGAGCTAGAGAAGACATTAATGCTACAAACATCAATCATAGAAGAAGGCAAGACATATTTGGTGTTTGCTGCAACAAACCAAACAAGACAAGAATGGAGGCCAAGAAAGTATGTGGTTATGATAGACTTACCAAATGAAGATTTCAGCTGCATTTGTGCTAAGTTTTCAAAGGATGGAATTCTCTGTTGTCATGTCCTGAAAATAATGTTACAACTAAATGTTCAGAAGATTCCAGACAAATACATCATTGATAGGTGGAGGAAAAGAGAGAAAAAAATAGCCACAATTTTGAAAGATTTACATACAATGGAGATAATTCAGCTTTAA
More
|
||||||||||
| Protein seq | MEIAVKSRQKELESAQEKNTMGNPTISTTKDFSSEKQIEKSIQMEESTNPRANLSSAGTNSPEIAYGGQMLHEEYALLSSQTELGQQMSYTALMQQVIQSQSPKINLHTNQGRLAEMNYHLQSPIGYSVQITSTENSALEQVNGAEQAGIASTEDNAEMTDKENKESAADEEEADNDEIDSRHIPCEGMQFKTDDEAYKFFNFYAYLSGFSIVIAHSLKTSDKKRNNKHGKNQDNATNQVQKKKGTRNTNVLVRTDCKCVMVVRENNGIWSVIRLDLNHNHNLCPPEERKFLYSHKDMTQEEKSLILTLKECNIPTRSMVVLLASLRGGLSSLPYTKKDISNLIFKARATCIPVYFKNDWFPFIHSTTLSEGTNTRYKQEVGPRHSVSSFLKEHDRINDIILETQHINDHKSNTKRPKEFWSDYCIEEQACKLYNSAIFERFQLELEKTLMLQTSIIEEGKTYLVFAATNQTRQEWRPRKYVVMIDLPNEDFSCICAKFSKDGILCCHVLKIMLQLNVQKIPDKYIIDRWRKREKKIATILKDLHTMEIIQL |
||||||||||
| Function | Protein FAR1-RELATED SEQUENCE 3 [UniProtKB/Swiss-Prot:Q9ZVC9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_12G012560 | OsN22_12G012560_01 | Chr12 | 16863614 | 16869176 | + | NAM | ||
| CDS seq | ATGGAGATCGCTGTGAAATCTAGACAAAAGGAATTGGAATCTGCTCAAGAAAAAAACACCATGGGAAATCCTACAATCTCAACAACCAAGGATTTCTCATCAGAAAAGCAGATCGAAAAATCTATTCAGATGGAAGAGAGCACAAACCCTAGAGCAAACTTGTCTTCTGCAGGTACCAATTCTCCAGAAATAGCTTATGGGGGACAGATGTTACATGAAGAGTATGCGTTGCTAAGCTCGCAAACAGAGCTGGGACAACAAATGAGCTACACAGCGCTGATGCAACAAGTTATTCAAAGTCAAAGTCCTAAGATAAACTTGCATACCAATCAGGGAAGGCTTGCTGAAATGAACTATCACCTTCAATCACCAATAGGATACAGTGTACAAATTACTAGCACAGAAAATTCAGCACTTGAGCAAGTAAATGGTGCAGAGCAAGCTGGCATAGCTTCTACAGAAGATAATGCAGAAATGACAGACAAAGAAAATAAAGAAAGTGCAGCAGATGAAGAGGAAGCTGACAATGATGAGATAGATAGCCGTCATATACCTTGTGAAGGGATGCAATTCAAGACTGATGATGAAGCATACAAATTCTTCAACTTCTATGCTTATTTAAGCGGATTCTCCATTGTGATTGCCCACAGCTTGAAGACCAGTGACAAGAAAAGGAACAATAAGCATGGAAAAAATCAGGACAATGCAACCAACCAAGTTCAGAAAAAGAAAGGGACAAGAAATACAAATGTTCTAGTGAGAACTGATTGCAAATGTGTGATGGTTGTTAGAGAAAATAATGGCATATGGAGTGTTATAAGACTAGATCTCAATCACAACCACAATCTTTGCCCCCCAGAAGAGAGAAAATTCCTCTACTCACACAAAGACATGACACAGGAAGAGAAGAGCTTAATTCTAACACTAAAAGAATGTAACATACCAACACGAAGCATGGTGGTGTTACTGGCATCACTCCGTGGAGGGTTATCATCGCTGCCATATACAAAGAAAGACATCAGCAACCTAATTTTTAAAGCAAGGGCAACATGTATCCCTGTATACTTCAAGAATGATTGGTTCCCATTTATCCATAGCACAACTCTAAGTGAAGGAACAAATACAAGGTACAAACAAGAGGTGGGCCCAAGACACAGTGTCAGTAGTTTCCTAAAGGAGCATGATAGAATCAATGACATAATACTTGAAACACAGCACATCAATGACCATAAATCAAATACTAAAAGACCAAAAGAGTTTTGGTCAGATTACTGCATAGAAGAACAGGCGTGTAAACTATACAACTCAGCAATCTTCGAAAGATTCCAATTAGAGCTAGAGAAGACATTAATGCTACAAACATCAATCATAGAAGAAGGCAAGACATATTTGGTGTTTGCTGCAACAAACCAAACAAGACAAGAATGGAGGCCAAGAAAGTATGTGGTTATGATAGACTTACCAAATGAAGATTTCAGCTGCATTTGTGCTAAGTTTTCAAAGGATGGAATTCTCTGTTGTCATGTCCTGAAAATAATGTTACAACTAAATGTTCAGAAGATTCCAGACAAATACATCATTGATAGGTGGAGGAAAAGAGAGAAAAAAATAGCCACAATTTTGAAAGATTTACATACAATGGAGATAATTCAGCTTTAA
More
|
|||||||
| Protein seq | MEIAVKSRQKELESAQEKNTMGNPTISTTKDFSSEKQIEKSIQMEESTNPRANLSSAGTNSPEIAYGGQMLHEEYALLSSQTELGQQMSYTALMQQVIQSQSPKINLHTNQGRLAEMNYHLQSPIGYSVQITSTENSALEQVNGAEQAGIASTEDNAEMTDKENKESAADEEEADNDEIDSRHIPCEGMQFKTDDEAYKFFNFYAYLSGFSIVIAHSLKTSDKKRNNKHGKNQDNATNQVQKKKGTRNTNVLVRTDCKCVMVVRENNGIWSVIRLDLNHNHNLCPPEERKFLYSHKDMTQEEKSLILTLKECNIPTRSMVVLLASLRGGLSSLPYTKKDISNLIFKARATCIPVYFKNDWFPFIHSTTLSEGTNTRYKQEVGPRHSVSSFLKEHDRINDIILETQHINDHKSNTKRPKEFWSDYCIEEQACKLYNSAIFERFQLELEKTLMLQTSIIEEGKTYLVFAATNQTRQEWRPRKYVVMIDLPNEDFSCICAKFSKDGILCCHVLKIMLQLNVQKIPDKYIIDRWRKREKKIATILKDLHTMEIIQL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0225300 | SBH | 0.362048 | 0.743072 | 1.648821 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g17020 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0225300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0011790 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0011910 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0011790 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0011310 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0009620 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0111800 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0009680 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0287300 | SBH | 0.45946 | 0.213316 | 0.2996655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0011090 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0011540 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0011340 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0009760 | SBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006380 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006450 | SBH | 0.0 | 0.0 | 0.0 |
