Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0006380 | OGI:12037870 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:5231684-5235014 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtcaTtttttttcatctatccaaatgtacagggcacagagacagaatcaaatgaagactatgggatgttattcaggttatcacaagagggaggcatcacctatacaaaattaatctagcaagtctctgtctcacctaatgcaattcttcctggtgctcaggtggcagtgactagaaataaaacacatattaaatgaaaatgtttaaactaaaactttatgtgcacagtcaacccccaatgtattttttttttttgcaaaacagggtggtcttcccttgctccaaaacacttgtggcagtttcatgcagctattgcaagctcctattgaatcagagttgtgttccctcttgtttatttgatttgtgctgtgccatcccattatttgattaaaaacatattcatgattgatgtggatatagctaatatggataaaagttcaaatcaaaatagaattataaaaaggtctctttattagaatttttttcttaccattgcagactgctctatatttgacatccaatagatttgagtatgacaacaccttttggggttttgatcctcacaatggttatcaacaaaatgacctgcaaaatgcacaaacagacacctctcagatgtgcaactctttgccacaaagtgtagctgtgcatcctcctgtggcatcacttgacatgctatatgatgaaatgcagaaatcaagtgctgatgttgataatcaagctgagatgtgcaggtcaacagtacaattgaaagcatcatctgtagaagtgatttataatgaaatgcagactcaaaccattgaggctgatgcctgttttgatcagcactttaagcaagcaacagaagaggatttattgtctgatcatgcaatagttacatttcagcaagttgaggaaatagaacaagataaaagtgcagaaaatccagatcaaaattttagtgaggaagatataaacatatttctagagaatgaaagtgtaacaggtgttcagagaggtggtcaggaagctaacagtgcacatgtgccgtcaatcagcaaagtttttgctgatgagaatgaagcttttgacttctacaatgattatgcttatatggttggtttctctacaagcaaagctagcaattaccatagcaggaaaaccgatattgtgacaaggcacacattcaaatgcaacaggtggaggaaaccaagtgatccaaaggagaaggacctgcctgaggttgatgaagttgaaaattgtctgcaaacaaacacaacaaatccattagtAaaaaaaaggaaacagaacaaagtggtttacacaaattgcaaagctgagatggtgataacattgaagaggggcttttggtacattacaaggcttaatctagagcacaatcatccactatctccaccagaagaaagaaaattcctaaggtctcacaaacatatgatagatcaggagaaacttttgataagaactttgaacaaaatcaatgtgcccacaaggatgattatgtctgttttgtcatatgttaggggtggcttgtctgcagttccttacacaaaaaaggctgtgagcaattatagagattgtgttagaagagaaagtgggaaaaatgacatgatgcagtgtttggatttttttgagaagaaaagatcagaggatccattgttttattttagattcagaactgatgagaacaatgttgtgaagagtctgttttggtccgatgggaacagcagaaaattttatgagatgtttggtgacatagttagttttgatacgacgtacaagaccaataggtatgatttgccctttgttccatttttagggataactagtcatggtgacaattgcctatttggttatgcattcctacaagacgaaacaagtgagacttttcagtggttgttcaatacgttccttgattgtatgggtggcaaggctcctgctactattataactgatcaagacttggcaatgaaagctgctattgccatagtttttccagacactgttcataggaattgcctgttccatatgttatcaaatgcaagggacaaaacaggaaggacattcaattcagaggatgaagaagtttacaaggatttccatgatattgttacaaaatcccagacagaggctgaatttgaatatttgtggaaagatttcataagaagaaagaatctgtataatgttaggtattttcagcttatgtgggtcactagaaagagatgggcaccagtttacttcaaaagcaattggtgccctttgattcagacaacagcaaggagtgaggggacaaattcaaggtacaaagctgacatttgttcatctcatagtgtttctgcattcctagcatagtatgaaaggattgcagaaacaatttatgagtgcttcaaagaacaggaatcgctgactaggaatactgttccagatacttggtcagaatatcaatttgagaagcaagctgcaaaactgtatactaggaagatattttgggcatttcagcatatcttgcaaagctataccaagtatgatgtgaccgtgaaagtgcacgattctatttttgaggtgtacaaatcagagattcatgcactgcaggatttcagaaaaaggaagtatattgtggttgttgatactatagctgaagaatttgaatatatctgttcaagatttaagaaggatggtattttgtgtgttcatgtgctcaaagtactcattcacttgaacataacaaaactatctgagaaatattttattgaaagatggaggctgaaagacaagaaccaggaattatttgtgccaaacacattgatgcctgctgctgttcttgaaagtaaccctttactcaggttcaacatcttgtcacacaaaatgattaagttggcttcagatgcatcaaaaacaaaagaaaagtttgtatatgtgatgaatgaaagtgacaagattgaagatgggttgaaggtaatgagtgacacggctcctaatgatgctactgttcatgttcaggatgcagcggcgacaacttgtggtatagcttctgttgatgctcaaactggtataccgatgggtcctagtggtgttggtattgatgctgagagcacaaagggtgcgattgctgaaactgaaacaacagatatggttggaattgcttctacttctgttttgctggatccaaaatgctctaatagcaaaggcaggcacaagagtgagccaagaaaaaagaggctgatagatgtgattagaagcaagggttcagtgacatgtagtggttgtgggtcccatgaccataacattcggacttgtcccaaaaaaaagagaagtcaaatgcaacaaaagtga
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| CDS seq | atgtcaTtttttttcatctatccaaatgtacagggcacagagacagaatcaaatgaagactatgggatgttattcagggtggtcttcccttgctccaaaacacttgtggcagtttcatgcagctattgcaagctcctattgaatcagagttgtactgctctatatttgacatccaatagatttgagtatgacaacaccttttggggttttgatcctcacaatggttatcaacaaaatgacctgcaaaatgcacaaacagacacctctcagatgtgcaactctttgccacaaagtgtagctgtgcatcctcctgtggcatcacttgacatgctatatgatgaaatgcagaaatcaagtgctgatgttgataatcaagctgagatgtgcaggtcaacagtacaattgaaagcatcatctgtagaagtgatttataatgaaatgcagactcaaaccattgaggctgatgcctgttttgatcagcactttaagcaagcaacagaagaggatttattgtctgatcatgcaatagttacatttcagcaagttgaggaaatagaacaagataaaagtgcagaaaatccagatcaaaattttagtgaggaagatataaacatatttctagagaatgaaagtgtaacaggtgttcagagaggtggtcaggaagctaacagtgcacatgtgccgtcaatcagcaaagtttttgctgatgagaatgaagcttttgacttctacaatgattatgcttatatggttggtttctctacaagcaaagctagcaattaccatagcaggaaaaccgatattgtgacaaggcacacattcaaatgcaacaggtggaggaaaccaagtgatccaaaggagaaggacctgcctgaggttgatgaagttgaaaattgtctgcaaacaaacacaacaaatccattagtAaaaaaaaggaaacagaacaaagtggtttacacaaattgcaaagctgagatggtgataacattgaagaggggcttttggtacattacaaggcttaatctagagcacaatcatccactatctccaccagaagaaagaaaattcctaaggtctcacaaacatatgatagatcaggagaaacttttgataagaactttgaacaaaatcaatgtgcccacaaggatgattatgtctgttttgtcatatgttaggggtggcttgtctgcagttccttacacaaaaaaggctcttatgtgggtcactagaaagagatgggcaccagtttacttcaaaagcaattggtgccctttgattcagacaacagcaaggagtgaggggacaaattcaaggattgcagaaacaatttatgagtgcttcaaagaacaggaatcgctgactaggaatactgttccagatacttggtcagaatatcaatttgagaagcaagctgcaaaactgtatactaggaagatattttgggcatttcagcatatcttgcaaagctataccaagtatgatgtgaccgtgaaagtgcacgattctatttttgaggtgtacaaatcagagattcatgcactgcaggatttcagaaaaaggaagtatattgtggttgttgatactatagctgaagaatttgaatatatctgttcaagatttaagaaggatggtattttgtgtgttcatgtgctcaaagtactcattcacttgaacataacaaaactatctgagaaatattttattgaaagatggaggctgaaagacaagaaccaggaattatttgtgccaaacacattgatgcctgctgctgttcttgaaagtaaccctttactcaggttcaacatcttgtcacacaaaatgattaagttggcttcagatgcatcaaaaacaaaagaaaagtttgtatatgtgatgaatgaaagtgacaagattgaagatgggttgaaggtaatgagtgacacggctcctaatgatgctactgttcatgttcaggatgcagcggcgacaacttgtggtatagcttctgttgatgctcaaactggtataccgatgggtcctagtggtgttggtattgatgctgagagcacaaagggtgcgattgctgaaactgaaacaacagatatggttggaattgcttctacttctgttttgctggatccaaaatgctctaatagcaaaggcaggcacaagagtgagccaagaaaaaagaggctgatagatgtgattagaagcaagggttcagtgacatgtagtggttgtgggtcccatgaccataacattcggacttgtcccaaaaaaaagagaagtcaaatgcaacaaaagtga
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| Protein seq | MSFFFIYPNVQGTETESNEDYGMLFRVVFPCSKTLVAVSCSYCKLLLNQSCTALYLTSNRFEYDNTFWGFDPHNGYQQNDLQNAQTDTSQMCNSLPQSVAVHPPVASLDMLYDEMQKSSADVDNQAEMCRSTVQLKASSVEVIYNEMQTQTIEADACFDQHFKQATEEDLLSDHAIVTFQQVEEIEQDKSAENPDQNFSEEDINIFLENESVTGVQRGGQEANSAHVPSISKVFADENEAFDFYNDYAYMVGFSTSKASNYHSRKTDIVTRHTFKCNRWRKPSDPKEKDLPEVDEVENCLQTNTTNPLVKKRKQNKVVYTNCKAEMVITLKRGFWYITRLNLEHNHPLSPPEERKFLRSHKHMIDQEKLLIRTLNKINVPTRMIMSVLSYVRGGLSAVPYTKKALMWVTRKRWAPVYFKSNWCPLIQTTARSEGTNSRIAETIYECFKEQESLTRNTVPDTWSEYQFEKQAAKLYTRKIFWAFQHILQSYTKYDVTVKVHDSIFEVYKSEIHALQDFRKRKYIVVVDTIAEEFEYICSRFKKDGILCVHVLKVLIHLNITKLSEKYFIERWRLKDKNQELFVPNTLMPAAVLESNPLLRFNILSHKMIKLASDASKTKEKFVYVMNESDKIEDGLKVMSDTAPNDATVHVQDAAATTCGIASVDAQTGIPMGPSGVGIDAESTKGAIAETETTDMVGIASTSVLLDPKCSNSKGRHKSEPRKKRLIDVIRSKGSVTCSGCGSHDHNIRTCPKKKRSQMQQK |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0006380 | OsLaMu_12g0006380.01 | Chr12 | 5231684 | 5235014 | + | NAM | ||
| CDS seq | atgtcaTtttttttcatctatccaaatgtacagggcacagagacagaatcaaatgaagactatgggatgttattcagggtggtcttcccttgctccaaaacacttgtggcagtttcatgcagctattgcaagctcctattgaatcagagttgtactgctctatatttgacatccaatagatttgagtatgacaacaccttttggggttttgatcctcacaatggttatcaacaaaatgacctgcaaaatgcacaaacagacacctctcagatgtgcaactctttgccacaaagtgtagctgtgcatcctcctgtggcatcacttgacatgctatatgatgaaatgcagaaatcaagtgctgatgttgataatcaagctgagatgtgcaggtcaacagtacaattgaaagcatcatctgtagaagtgatttataatgaaatgcagactcaaaccattgaggctgatgcctgttttgatcagcactttaagcaagcaacagaagaggatttattgtctgatcatgcaatagttacatttcagcaagttgaggaaatagaacaagataaaagtgcagaaaatccagatcaaaattttagtgaggaagatataaacatatttctagagaatgaaagtgtaacaggtgttcagagaggtggtcaggaagctaacagtgcacatgtgccgtcaatcagcaaagtttttgctgatgagaatgaagcttttgacttctacaatgattatgcttatatggttggtttctctacaagcaaagctagcaattaccatagcaggaaaaccgatattgtgacaaggcacacattcaaatgcaacaggtggaggaaaccaagtgatccaaaggagaaggacctgcctgaggttgatgaagttgaaaattgtctgcaaacaaacacaacaaatccattagtAaaaaaaaggaaacagaacaaagtggtttacacaaattgcaaagctgagatggtgataacattgaagaggggcttttggtacattacaaggcttaatctagagcacaatcatccactatctccaccagaagaaagaaaattcctaaggtctcacaaacatatgatagatcaggagaaacttttgataagaactttgaacaaaatcaatgtgcccacaaggatgattatgtctgttttgtcatatgttaggggtggcttgtctgcagttccttacacaaaaaaggctcttatgtgggtcactagaaagagatgggcaccagtttacttcaaaagcaattggtgccctttgattcagacaacagcaaggagtgaggggacaaattcaaggattgcagaaacaatttatgagtgcttcaaagaacaggaatcgctgactaggaatactgttccagatacttggtcagaatatcaatttgagaagcaagctgcaaaactgtatactaggaagatattttgggcatttcagcatatcttgcaaagctataccaagtatgatgtgaccgtgaaagtgcacgattctatttttgaggtgtacaaatcagagattcatgcactgcaggatttcagaaaaaggaagtatattgtggttgttgatactatagctgaagaatttgaatatatctgttcaagatttaagaaggatggtattttgtgtgttcatgtgctcaaagtactcattcacttgaacataacaaaactatctgagaaatattttattgaaagatggaggctgaaagacaagaaccaggaattatttgtgccaaacacattgatgcctgctgctgttcttgaaagtaaccctttactcaggttcaacatcttgtcacacaaaatgattaagttggcttcagatgcatcaaaaacaaaagaaaagtttgtatatgtgatgaatgaaagtgacaagattgaagatgggttgaaggtaatgagtgacacggctcctaatgatgctactgttcatgttcaggatgcagcggcgacaacttgtggtatagcttctgttgatgctcaaactggtataccgatgggtcctagtggtgttggtattgatgctgagagcacaaagggtgcgattgctgaaactgaaacaacagatatggttggaattgcttctacttctgttttgctggatccaaaatgctctaatagcaaaggcaggcacaagagtgagccaagaaaaaagaggctgatagatgtgattagaagcaagggttcagtgacatgtagtggttgtgggtcccatgaccataacattcggacttgtcccaaaaaaaagagaagtcaaatgcaacaaaagtga
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| Protein seq | MSFFFIYPNVQGTETESNEDYGMLFRVVFPCSKTLVAVSCSYCKLLLNQSCTALYLTSNRFEYDNTFWGFDPHNGYQQNDLQNAQTDTSQMCNSLPQSVAVHPPVASLDMLYDEMQKSSADVDNQAEMCRSTVQLKASSVEVIYNEMQTQTIEADACFDQHFKQATEEDLLSDHAIVTFQQVEEIEQDKSAENPDQNFSEEDINIFLENESVTGVQRGGQEANSAHVPSISKVFADENEAFDFYNDYAYMVGFSTSKASNYHSRKTDIVTRHTFKCNRWRKPSDPKEKDLPEVDEVENCLQTNTTNPLVKKRKQNKVVYTNCKAEMVITLKRGFWYITRLNLEHNHPLSPPEERKFLRSHKHMIDQEKLLIRTLNKINVPTRMIMSVLSYVRGGLSAVPYTKKALMWVTRKRWAPVYFKSNWCPLIQTTARSEGTNSRIAETIYECFKEQESLTRNTVPDTWSEYQFEKQAAKLYTRKIFWAFQHILQSYTKYDVTVKVHDSIFEVYKSEIHALQDFRKRKYIVVVDTIAEEFEYICSRFKKDGILCVHVLKVLIHLNITKLSEKYFIERWRLKDKNQELFVPNTLMPAAVLESNPLLRFNILSHKMIKLASDASKTKEKFVYVMNESDKIEDGLKVMSDTAPNDATVHVQDAAATTCGIASVDAQTGIPMGPSGVGIDAESTKGAIAETETTDMVGIASTSVLLDPKCSNSKGRHKSEPRKKRLIDVIRSKGSVTCSGCGSHDHNIRTCPKKKRSQMQQK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0225300 | SBH | 0.362048 | 0.743072 | 1.648821 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0225300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0011340 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0011520 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0011500 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0010720 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0042270 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0094800 | SBH | 2.637252 | 4.293466 | 4.7998755 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0041900 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0099100 | SBH | 3.212896 | 4.6106415 | 10.1059925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0002680 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0042190 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008680 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0002620 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0042250 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G011230 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006450 | RBH | 0.0 | 0.0 | 0.0 |
