Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_09g0010720 | OGI:01011440 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr09:16573334-16576864 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcgactatagcaaatcttgtgcagagtgtctgcttttccttatgcacaatagggtgactgaatttctaatagtgcacaactcagaatatcttgattcgctaactgttaaaactgctctggttcaagtagttgttctcttgtggtcattctttgaattatgggagctctctgttcatgcaatgccattacattgtacaaaggatgtaatgtcattttttttcatctatccaaatgtacagggcacagagatagaatcaaatgaagactatgggatgttataggttatcacaggagggaggcatcacctatacaaatttaatccagaaagtctctgtcttacctaatgcaatttttcctggtgctcaggtggcagtgagtagaaataaaacacatattaaatgaaaatgtttaaactaaaaactttatgtgcacagtcataacccccactgttttttttttgcaaaacagagtggtcttcccttgctccaaaacacttgtggcaatttcatgcagctattgcaagctcctattgaatcagaggtgtgttccctcttgtttatttgatttgtgctgtgccatcccattatttgattaaaaacatattcatgattgatgtggatatagctaatatggctaaaagttcaaatcaaaatagaattataaaaaggtctctttattagaattttttttcttaccattgcagactgctctatatttgacatccaatagatttgagtatgacaacatcttttggggtttcgatcctcacaatggttatcaacaaaatgacctgcaaaatgcacaaacagacacctctcagatgtgcaactctttgccacaaagtgtagctgtgcatcctcttgtggcatcactggacatgctatatgatgaaatgcagaaatcaagtgctgatgttgataatcaagctgagatgtgcaggtcaacagtacaattgaaagcatcatctgtagaagtgatttataatgaaatgcagactcaaaccattgaggctaatgcctgttttgaccagcactttgagcaagcaacaaaagaggatttattgtctgatcatgcaatagttacatttcagcaagttgaggaaatagaacaagataaaagtgcagaaaatccagatcaaaattttagtgaggaagatataaacatatttctggagaatgaaagtgtaacagctgttcagagaggtggtcaggaagctaacagtgcacatgtgccgtcaatcaacaaagtttttgctgatgagaatgaagcttttgacttctacaatggttatgcttatatggttggtttctctacatgcaaagctagcaattaccacagtaggaaaaccgatattgtgacaaggcacacattcaaatgcaacaggtggaggaaaccaagtgatccaaaggagaaggacctgcctgaggttgatgaagttgagaattgtctgcaaacaaacacaacaaatccattagtaaaaaatagaaaacagaacaaagtggtttacacaaattgcaaagctgagatggtgataacattgaagaggggcttttggtacattacaaggcttaatctagagcacaatcatccactatctccaccagaagaaagaaaattcctaaggtctcataaacatatgacagatcaggagaaacttttgataagaactctgaacaaaatcaatgtgcccacaaggatgattatgtctgttttgtcatatgttaggggtggcttgtctgcagttccttacacaaaaaaggctatgagcaattatagagattgtgttagaagagaaagtgggaaaaatgacatgatacagtgtttggatttttttgagaagaaaagatcagaggatccattgttttattttagattcagaactgatgagaacaatgttgtgaagagtctgttttggtccgatgggaacaacagaaaattttatgagatgtttggtgacatagttttgacacgacgtacaagaccaataggtatgatttgccctttgctccatttgtagggataactagtcatggtgacaattgcctatttggttatgcattcctacaagatgaaacaagtgagacttttcagtggttgttcaatacgttccttgattgtatgggtggcaaggctcctgctactattataactgatcaagacttggcaatgaaagctgctattgccatagtttttccagacactgttcataggaattgcctgttccatatgttatcaaatgcaagggacaaaacaggaaggacattcaattcagaggatgaagaagtttacaaggatttccatgatattgttacaaaatcccagacagaggctgaatttgaatatttgtggaaagatttcataagaagaaagaatctgtataatgttaggtattttcagcttatgtgggtcactagaaagagatgggcaccagtttacttcaaaagcaattggtgccctttgattcagacaacagcaaggagtgaggggacaaattcaaggtacaaagctgacatttgttcatctcatagtgtttctgcattcctagcacagtatgaaaggattgcaaaaacaatttatgagtgcttcaaagaataggaatcgctgactaggaatattgttccagatacttggtcagaatatcaatttgagaagcaagctgcaaaactgtatactaggaagatattttgggcatttcagcgtatcttgcaaagctataccaagtatgatgtgactgtgaaagtgcacgattctatttttgaggtgtacaaatcagagattcatgcactgcaggatttcagaaaaaggaagtatattgtggttgttgatgctatagctgaagaatatgaatgtatttgttcaagatttaagaaggatggtattttgtgtgttcatgtgctcaaagtactcattcacttgaacataacaaaactacctgagaaatattttattgaaagatggaggctgaaagacaagaaccatgaattatttgtgccaaacacattgatgcctgctgctgttcttgaaagcaaccctttactcaagttcaacatcttgtcacagaaaatgattaagttggctttagatgcatcaaaaacaaaagaaaattttgtatatgtgatgaatgaaagtgacaagattgaagatgggttgaaggcaatgagtgacacggctcctaatgatgctactgttcatgttcaggatgcagcggcgacaacttatggtgtagcttctgttggtgctcaaactggtataccgatgggtcctagtggtgttggtattgatgctgagatcacaaagggtgcggttgctgaaactgaaacaacagatatggttggaattgcttctacttctgttttgctggatccaaaatgctctaatagcaaaggtaggcacaagagtgagccaagaaaaaagacgctgatagatgtgattagaagcaagggttcagtgacatgtagtgattgtgggtcccatgaccataacattcggacttgtcccaaaaaaaagagaagtcaaatgcaacagaactga
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| CDS seq | atgcacaatagggtgactgaatttctaatagtgcacaactcagaatatcttgattcgctaactgttaaaactgctctggttcaagtagttgttctcttgtggtcattctttgaattatgggagctctctgttcatgcaatgccattacattgtacaaaggatgtaatgtcattttttttcatctatccaaatgtacagggcacagagatagaatcaaatgaagactatgggatgttatcacaggagggaggcatcacctatacaaatttaatccagaaagtctctgtcttacctaatgcaatttttcctggtgctcaggtggcaagtggtcttcccttgctccaaaacacttgtggcaatttcatgcagctattgcaagctcctattgaatcagagactgctctatatttgacatccaatagatttgagtatgacaacatcttttggggtttcgatcctcacaatggttatcaacaaaatgacctgcaaaatgcacaaacagacacctctcagatgtgcaactctttgccacaaagtgtagctgtgcatcctcttgtggcatcactggacatgctatatgatgaaatgcagaaatcaagtgctgatgttgataatcaagctgagatgtgcaggtcaacagtacaattgaaagcatcatctgtagaagtgatttataatgaaatgcagactcaaaccattgaggctaatgcctgttttgaccagcactttgagcaagcaacaaaagaggatttattgtctgatcatgcaatagttacatttcagcaagttgaggaaatagaacaagataaaagtgcagaaaatccagatcaaaattttagtgaggaagatataaacatatttctggagaatgaaagtgtaacagctgttcagagaggtggtcaggaagctaacagtgcacatgtgccgtcaatcaacaaagtttttgctgatgagaatgaagcttttgacttctacaatggttatgcttatatggttggtttctctacatgcaaagctagcaattaccacagtaggaaaaccgatattgtgacaaggcacacattcaaatgcaacaggtggaggaaaccaagtgatccaaaggagaaggacctgcctgaggttgatgaagttgagaattgtctgcaaacaaacacaacaaatccattagtaaaaaatagaaaacagaacaaagtggtttacacaaattgcaaagctgagatggtgataacattgaagaggggcttttggtacattacaaggcttaatctagagcacaatcatccactatctccaccagaagaaagaaaattcctaaggtctcataaacatatgacagatcaggagaaacttttgataagaactctgaacaaaatcaatgtgcccacaaggatgattatgtctgttttgtcatatcttatgtgggtcactagaaagagatgggcaccagtttacttcaaaagcaattggtgccctttgattcagacaacagcaaggagtgaggggacaaattcaaggtacaaagctgacatttgttcatctcatagtgaatcgctgactaggaatattgttccagatacttggtcagaatatcaatttgagaagcaagctgcaaaactgtatactaggaagatattttgggcatttcagcgtatcttgcaaagctataccaagtatgatgtgactgtgaaagtgcacgattctatttttgaggtgtacaaatcagagattcatgcactgcaggatttcagaaaaaggaagtatattgtggttgttgatgctatagctgaagaatatgaatgtatttgttcaagatttaagaaggatggtattttgtgtgttcatgtgctcaaagtactcattcacttgaacataacaaaactacctgagaaatattttattgaaagatggaggctgaaagacaagaaccatgaattatttgtgccaaacacattgatgcctgctgctgttcttgaaagcaaccctttactcaagttcaacatcttgtcacagaaaatgattaagttggctttagatgcatcaaaaacaaaagaaaattttgtatatgtgatgaatgaaagtgacaagattgaagatgggttgaaggcaatgagtgacacggctcctaatgatgctactgttcatgttcaggatgcagcggcgacaacttatggtgtagcttctgttggtgctcaaactggtataccgatgggtcctagtggtgttggtattgatgctgagatcacaaagggtgcggttgctgaaactgaaacaacagatatggttggaattgcttctacttctgttttgctggatccaaaatgctctaatagcaaaggtaggcacaagagtgagccaagaaaaaagacgctgatagatgtgattagaagcaagggttcagtgacatgtagtgattgtgggtcccatgaccataacattcggacttgtcccaaaaaaaagagaagtcaaatgcaacagaactga
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| Protein seq | MHNRVTEFLIVHNSEYLDSLTVKTALVQVVVLLWSFFELWELSVHAMPLHCTKDVMSFFFIYPNVQGTEIESNEDYGMLSQEGGITYTNLIQKVSVLPNAIFPGAQVASGLPLLQNTCGNFMQLLQAPIESETALYLTSNRFEYDNIFWGFDPHNGYQQNDLQNAQTDTSQMCNSLPQSVAVHPLVASLDMLYDEMQKSSADVDNQAEMCRSTVQLKASSVEVIYNEMQTQTIEANACFDQHFEQATKEDLLSDHAIVTFQQVEEIEQDKSAENPDQNFSEEDINIFLENESVTAVQRGGQEANSAHVPSINKVFADENEAFDFYNGYAYMVGFSTCKASNYHSRKTDIVTRHTFKCNRWRKPSDPKEKDLPEVDEVENCLQTNTTNPLVKNRKQNKVVYTNCKAEMVITLKRGFWYITRLNLEHNHPLSPPEERKFLRSHKHMTDQEKLLIRTLNKINVPTRMIMSVLSYLMWVTRKRWAPVYFKSNWCPLIQTTARSEGTNSRYKADICSSHSESLTRNIVPDTWSEYQFEKQAAKLYTRKIFWAFQRILQSYTKYDVTVKVHDSIFEVYKSEIHALQDFRKRKYIVVVDAIAEEYECICSRFKKDGILCVHVLKVLIHLNITKLPEKYFIERWRLKDKNHELFVPNTLMPAAVLESNPLLKFNILSQKMIKLALDASKTKENFVYVMNESDKIEDGLKAMSDTAPNDATVHVQDAAATTYGVASVGAQTGIPMGPSGVGIDAEITKGAVAETETTDMVGIASTSVLLDPKCSNSKGRHKSEPRKKTLIDVIRSKGSVTCSDCGSHDHNIRTCPKKKRSQMQQN |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_09g0010720 | OsARC_09g0010720.01 | Chr09 | 16573334 | 16576864 | + | NAM | ||
| CDS seq | atgcacaatagggtgactgaatttctaatagtgcacaactcagaatatcttgattcgctaactgttaaaactgctctggttcaagtagttgttctcttgtggtcattctttgaattatgggagctctctgttcatgcaatgccattacattgtacaaaggatgtaatgtcattttttttcatctatccaaatgtacagggcacagagatagaatcaaatgaagactatgggatgttatcacaggagggaggcatcacctatacaaatttaatccagaaagtctctgtcttacctaatgcaatttttcctggtgctcaggtggcaagtggtcttcccttgctccaaaacacttgtggcaatttcatgcagctattgcaagctcctattgaatcagagactgctctatatttgacatccaatagatttgagtatgacaacatcttttggggtttcgatcctcacaatggttatcaacaaaatgacctgcaaaatgcacaaacagacacctctcagatgtgcaactctttgccacaaagtgtagctgtgcatcctcttgtggcatcactggacatgctatatgatgaaatgcagaaatcaagtgctgatgttgataatcaagctgagatgtgcaggtcaacagtacaattgaaagcatcatctgtagaagtgatttataatgaaatgcagactcaaaccattgaggctaatgcctgttttgaccagcactttgagcaagcaacaaaagaggatttattgtctgatcatgcaatagttacatttcagcaagttgaggaaatagaacaagataaaagtgcagaaaatccagatcaaaattttagtgaggaagatataaacatatttctggagaatgaaagtgtaacagctgttcagagaggtggtcaggaagctaacagtgcacatgtgccgtcaatcaacaaagtttttgctgatgagaatgaagcttttgacttctacaatggttatgcttatatggttggtttctctacatgcaaagctagcaattaccacagtaggaaaaccgatattgtgacaaggcacacattcaaatgcaacaggtggaggaaaccaagtgatccaaaggagaaggacctgcctgaggttgatgaagttgagaattgtctgcaaacaaacacaacaaatccattagtaaaaaatagaaaacagaacaaagtggtttacacaaattgcaaagctgagatggtgataacattgaagaggggcttttggtacattacaaggcttaatctagagcacaatcatccactatctccaccagaagaaagaaaattcctaaggtctcataaacatatgacagatcaggagaaacttttgataagaactctgaacaaaatcaatgtgcccacaaggatgattatgtctgttttgtcatatcttatgtgggtcactagaaagagatgggcaccagtttacttcaaaagcaattggtgccctttgattcagacaacagcaaggagtgaggggacaaattcaaggtacaaagctgacatttgttcatctcatagtgaatcgctgactaggaatattgttccagatacttggtcagaatatcaatttgagaagcaagctgcaaaactgtatactaggaagatattttgggcatttcagcgtatcttgcaaagctataccaagtatgatgtgactgtgaaagtgcacgattctatttttgaggtgtacaaatcagagattcatgcactgcaggatttcagaaaaaggaagtatattgtggttgttgatgctatagctgaagaatatgaatgtatttgttcaagatttaagaaggatggtattttgtgtgttcatgtgctcaaagtactcattcacttgaacataacaaaactacctgagaaatattttattgaaagatggaggctgaaagacaagaaccatgaattatttgtgccaaacacattgatgcctgctgctgttcttgaaagcaaccctttactcaagttcaacatcttgtcacagaaaatgattaagttggctttagatgcatcaaaaacaaaagaaaattttgtatatgtgatgaatgaaagtgacaagattgaagatgggttgaaggcaatgagtgacacggctcctaatgatgctactgttcatgttcaggatgcagcggcgacaacttatggtgtagcttctgttggtgctcaaactggtataccgatgggtcctagtggtgttggtattgatgctgagatcacaaagggtgcggttgctgaaactgaaacaacagatatggttggaattgcttctacttctgttttgctggatccaaaatgctctaatagcaaaggtaggcacaagagtgagccaagaaaaaagacgctgatagatgtgattagaagcaagggttcagtgacatgtagtgattgtgggtcccatgaccataacattcggacttgtcccaaaaaaaagagaagtcaaatgcaacagaactga
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| Protein seq | MHNRVTEFLIVHNSEYLDSLTVKTALVQVVVLLWSFFELWELSVHAMPLHCTKDVMSFFFIYPNVQGTEIESNEDYGMLSQEGGITYTNLIQKVSVLPNAIFPGAQVASGLPLLQNTCGNFMQLLQAPIESETALYLTSNRFEYDNIFWGFDPHNGYQQNDLQNAQTDTSQMCNSLPQSVAVHPLVASLDMLYDEMQKSSADVDNQAEMCRSTVQLKASSVEVIYNEMQTQTIEANACFDQHFEQATKEDLLSDHAIVTFQQVEEIEQDKSAENPDQNFSEEDINIFLENESVTAVQRGGQEANSAHVPSINKVFADENEAFDFYNGYAYMVGFSTCKASNYHSRKTDIVTRHTFKCNRWRKPSDPKEKDLPEVDEVENCLQTNTTNPLVKNRKQNKVVYTNCKAEMVITLKRGFWYITRLNLEHNHPLSPPEERKFLRSHKHMTDQEKLLIRTLNKINVPTRMIMSVLSYLMWVTRKRWAPVYFKSNWCPLIQTTARSEGTNSRYKADICSSHSESLTRNIVPDTWSEYQFEKQAAKLYTRKIFWAFQRILQSYTKYDVTVKVHDSIFEVYKSEIHALQDFRKRKYIVVVDAIAEEYECICSRFKKDGILCVHVLKVLIHLNITKLPEKYFIERWRLKDKNHELFVPNTLMPAAVLESNPLLKFNILSQKMIKLALDASKTKENFVYVMNESDKIEDGLKAMSDTAPNDATVHVQDAAATTYGVASVGAQTGIPMGPSGVGIDAEITKGAVAETETTDMVGIASTSVLLDPKCSNSKGRHKSEPRKKTLIDVIRSKGSVTCSDCGSHDHNIRTCPKKKRSQMQQN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g25510 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0010710 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0010670 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0010960 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0002560 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0002750 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0296400 | RBH | 0.00389 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0002650 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0215900 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0002680 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0002710 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0002740 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0002620 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0002740 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G008160 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0002730 | SBH | 0.0 | 0.0 | 0.0 |
