Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_11G022651 | OGI:11069700 | 6/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr11:28727366-28730808 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCCGTGCTAACGCTACGATAATATTTTGTAGTTCAAATGTTGTACATCCAAATCGCCAAAAAAAAAATGCTTCCACATTCCGTTGATCTTAATACAAAATAATACACATACACCACAGTAAGGACATGATTATTTTACAGCCCACTTGATGGTTCGATAACAATACATCTCTGGAAATGGCATGAGGGGTAACAAATCTAGTAAAGTGGCAAAGAATTCTCTCAATAATCTATTATGCGCATACTATGACCACTGATTCAGAAAAATATTATCCAGATCCCAACAAAACCTACACAATTCTGATTGAACCAGTGTGTAGGAGAGTAATAAGGTTTCTACAGCCATTGCATGCTTCAGATTTATTTAACAGCCCAATAGCTTATTATGCACTTCATTGTGTTGAACTTGAAATGCCTTGCTTGTGCTGCAGAGAGGTGAAACGGAATCTTAAGAATTATTAAAGGCGTTTCAAAACAAAGAAAAAGGCTAGGCCTTGATCAGCATAAATCAGTTCATTTAAATTTTAGCTTGCTCAATGTTTTCCATGGCCAAGAGTCAGCATAAACACCAACATTAAACAACACCATATAAGGGGAATCATGCTTGATCAATGTTTTCCATGGCCAAGAGTCAGCATAAACACCAACATTAAACAACACCATATATGGGGAATCATGCTTGATCATCAAGTGGGGAATAGTAAACTATTGACAATCCTGCCAATTAGGTACAACACAAAATCATGCAAATCAGTTGTATCATATTTCAAAAAGTTAATCAAATCATGTAATACAGTCAAACCACACCCAGTCAAGCTGACCTCACCACCCCAGAGGTAGTCGCCTCCCCGGAACTTCACCAAGACAGCCCCTCCATGTGCCCTACAACGATGATGTAGGCATCCACATTTGCTGTCATTGGTTGCCCTGTAAATAACACTCGCTGTAGCTCAATAGATGTCAAACCACACTGTTAAACATGAGGCACATGATTTTTTTTGGTAGAAAATTGGGAAAGAAAACACCGAAACAGCACAAATTATTTGTACTGATAAATCGAAGACTATTTGAAAAAGAATTCATAGAAGTAAGGAATGCACTGGAAAAGAACACAATTCTCAAATATGGGACCTGATCACTTAACATGATATTAAATCGAGCAGTTCGTGAGCAGCAAGATTTTTTTTTAATGGAATGAGCAGCAAGATTTCGATGAGCAAGAGCAGTGAAATACCATGCCGAAGTCCAAACATTACATCCATACATGGTACTATCAACATGTCTACTGCCGTAAATTCAGACAGTACATGCTACTCTGAACATGTCTATATGCTGTCAAAATGCTGAATATGACTGAAATTCTGAAACCAACTAAATGGGATCAAGTCTCAACCCATCGACAATAAAGCTCCGACATTAAGATAAAATCCATACATATATAACCCTAAAAACTAATGCTAACCTCAGCCTGATAGATTGGAAAGTAGTTACCTTTAATATCGGATGCATCGACCCTCACTCCATTATCCAGCTAAAAGCATCAGCCACAATCATGGTTCCACAGATCATCATCTGCTGCACGTTGTCCTAGGTGTTAGCACCACCTCCATGCTGCCCACGACTCAATTGTGCCAATTTAAATTGTTGACAGACTACACAATGCTGGAACTTTGGATCAAGGACATACAGGAGTTCTGCAAATTAATGAAGCATACCGGCTCCCGAAACCAGTTGCTCTCGTCTTTCTCCCTGATCGGCACTGAAATATAAAAGTAGTAAGAAAGAATGCCCATGTTCCTCTTCATATTTGAATTTCATTGATTCAACTTGAACTCACCCGACAAATCACAAAACCATGCATCCCTTTAATGTAGTTATGTTTTCATCTGATCCATCCCTTTAATTTAGTAAGAAAGTGAAGTTCCTGACTAAGAATAGCTGCATTATTCTAACTTTTTTTTACCAGAACTGCATTCTTTCTTTGTTTTTTTACCAGGACTGCATTCTATCTGTTGAAAGAAATATTATGTACAGTGTACAATTGCTGAGAAAACCTTGACATCAATAGAATTTGCGGGTTTTTTTATTCCATATAATTTTAAAATAAACCCAATCATATTCTCATTGCAAAAGGATACTTTGGAAGTATCAGCATCGTTACAAAGAGATTATAGTGAGGCACAAATAAATGTATGCTCGAATTACTACAGATGAAAGCAACACTCATACGGGATTGTATAATTCTGAAGCATTCAAAAACATTCTCACAGGTTTCTATAAATCTATGCGTAAGCCATCATAATCTAGAATACTTCAGTCTATGCTCGAGGTAAGTATATAATATACACGGTGTGAATAAGAGTATATTATGTTTCATGCATAAGAGTAGCAGTCCCGCATAAGAGTAGTTGAAAATCATATGGCCGATGTATCTCTTCTCATGCATAAAAAGGATCCAGAATATCTTGTTAATAAAATGCATGTTTTGTGCCATTTTTCTACTGAAATCCTTTTTGTCATGCATTCTGTAAGACCCTAACGATCCCCACTCATGCACTAAAACCTAAACTCAATTTATTCATCCAAAAACCACGATCTGAAACCATACATACATCCCTAGTACATCTGAAACAATACATAAGATGCCACTGGTGCTGGTCCTCAATACCGATCTTCCTCATCATCGCTACATGAAGAGAAAAGTATATATATTCCCTCCACATCTAAACTTGTTATAAGGGTTGTTAATTAGAAAAAGGTGATCTCAGCCATAGAAGTAAAAGGATGGCTGAGAATAGGTGAAATTCACCCAGGCAACAGCTGCTGCTGCGGCTGCTCTTGTTTGGGCAATAAAATCAATTGGTTATTTTCAAGTCCTACATTGGGGGAGTTTAAGCCATTGGGGGAGTTGCTTTAGTTGGTTTCAATTGTAATGGTTGAAGGAATGGGATCGAGCGAAGCTTACCTTGTCTGCAGCCAGTGGTGGAGAGGGTTCTGGTGGTGGCGCAACAGAGAGCACATGGGGCAGGATCCTTGGCGGTGGCGGCGTCGCGGTACAGAAGGCATCCCGGTGGCGGCTCAAGATCCTTCGTGGTGGCGTCGGAGGCGTCTCGCGACGCGGTCGGCAGGAGGGACCGCGCGCCGGCTGCGTGGTCAGCGGTGAGGGGCGGCGCCGCCGTCGCTGGAGGGGGGCACGGGTGTCGGAGGCGTATCGCGAGTTCGCGACGCGGTCAGTGGGGAGGGGCGCCGTCGCGCTGGCGGCGAACGGAAGGGTGGCAGCAGGGGAGAGAGGAGGAGGTGGCGGCAACGATTAGGGTTTGCCCGGGGAGTGCGGCGACGCTTGTGGTGGCAAGGGAGGCGACCGCGCTGTAGGTTGGGAGAGGGAGGCGGAGCGATCTGGATTGGGGGAAGGAGAGCGCGTTGGGGATTTTCGGTCGAGGT
More
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| CDS seq | CTCGACCGAAAATCCCCAACGCGCTCTCCTTCCCCCAATCCAGATCGCTCCGCCTCCCTCTCCCAACCTACAGCGCGGTCGCCTCCCTTGCCACCACAAGCGTCGCCGCACTCCCCGGGCAAA |
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| Protein seq | LDRKSPTRSPSPNPDRSASLSQPTARSPPLPPQASPHSPGK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_11G022651 | OsN22_11G022651_01 | Chr11 | 28727366 | 28730765 | - | IsoSeq | ||
| CDS seq | ATGGCTGTAGAAACCTTATTACTCTCCTACACACTGGTTCAATCAGAATTGTGTAGGTTTTGTTGGGATCTGGATAATATTTTTCTGAATCAGTGG |
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| Protein seq | MAVETLLLSYTLVQSELCRFCWDLDNIFLNQW |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_11G022651 | OsN22_11G022651_02 | Chr11 | 28727956 | 28730808 | - | IsoSeq | ||
| CDS seq | CTCGACCGAAAATCCCCAACGCGCTCTCCTTCCCCCAATCCAGATCGCTCCGCCTCCCTCTCCCAACCTACAGCGCGGTCGCCTCCCTTGCCACCACAAGCGTCGCCGCACTCCCCGGGCAAA |
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| Protein seq | LDRKSPTRSPSPNPDRSASLSQPTARSPPLPPQASPHSPGK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr11 | 28728859 | 28729126 | - | OsN22_11G022651_01 | OsN22_11G022651_02,OsN22_11G022651_01 | All |
| RI | Chr11 | 28728859 | 28729126 | - | OsN22_11G022651_01 | OsN22_11G022651_02,OsN22_11G022651_01 | IsoSeq |
| RI | Chr11 | 28728859 | 28729126 | - | OsN22_11G022651_01 | OsN22_11G022651_01,OsN22_11G022651_02 | Leaf |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.725223 | 1.078764 | 1.915657 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020770 | RBH | 0.047848 | 4.111341 | 2.635446 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
