Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0020770 | OGI:11069700 | 6/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:25503439-25507642 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atcgctcctcctcccacctccaccgaaaatccccaacgcgctctccttcccccaacccagatcgctccgccgcctccctctcccaacctacagcgcgccgtcgcctcccccgccaccacaagcgccgctgcactcccccccggcaaaccctaatcgtcgccacgacctcctcctctctcccctgctgccacccttccgtttcgccgccagcgcgacggctcccctccccaccgaccgcgtcgcgaactcgcgatacgcctccgacgcccgtgcccccctccagcgacagcggcgccacccctcaccgctaccacgcagccggcgcccggtccctcctgccgaccgcgttgcgagacgcctccctcatgattgacgcgctttgttctgggttgggcacagtaagctgaagtacctcgtcgccagctccctctccgaggcctgcaacaactccatcctgctcctcaggccctgcggctgcggaaaagccgcggtgaggttttccttctgcttcccctttcagcagttttctggaatgcgggggtggtgttcgacgaaatgtgccagtgggcggtctaccactttatgctatcggttgttttggcctggactgatatttcaattcttcgcaggtggtcgacatggttgtagacgatctgaagaaggagcatcctgatgcaatcctgatgcaatatcctgactttacttgttgctagaaatgtatccatgtatttgcgtaatacacgaccgatgatttacctatgttggctgtgaaataaacatacaggttacgagaaaatagtttgtttcagggcgctttagggcggaaggggacaaggataaatgtagaaattcctttcatatttttatgttctcaaatgcatggcctagccaaaagggcaatatatcataatgcacaattagttagactttgttaacttgtagttcatttggatcattgtgcaaacttttttcagatcaggctgaatgggatgctacatagtgatgacaactgtgccacgaaggttagagctttctgatgccagcttttttggttcaatttctgtattccacatgctctctgaaccagatctccctctctcttaactcctgtcgaccaattcagttaactccatagttgtttctatgctttatcaactccaatgcagccatgctaatgcttttgttactttgcttttaaggaaattgcgaggcaactttgtttggaacatcagttattatttcccaaaatggtgtgtggcgtctactctagccttcactctctcaattattgttctttttatcattttaaaagatcttatctcttttaggcttcttcagatgacaacatggaattcatgattgacatgttacggtaagtgaagtgttaacatgatgagcatctgtacatcatggagacatcctttttcctgggtgaatttcacctaatctgagccatccttttacttctatggctgagatcaccgttttctaattaacaacccttatactcagtttagatgtggaggtaatatacatacttttctcttcatgtagcgatgatgaggaagatcggtactgaggaccggcaccagtggcatcttatgtatggtttcagatgtactagggatgtatgtatgtggcatcttatgtatggtttcagatgtactagggatgtatgtatggtttcagatcgtggttttggatgaataaattgagtttaggttttagtgcaaccttgtctcttgcatgagtggggatcgttggggtcttacagaatgcatgacaaaatggattccggtagaaaaaatgccacaaaacatgcattttattaacaagatattctggatcctttttatgcataagaagagatacatcggccatatgattttcaactactcttgtgcgggactgctactcttatccacaaaacataatatactcttactcgcaccgtgtatattatatatttacctcgagcatagtaacagattcaatttctatctcgaatggtgcttcaaacaatatatatgtggggttgtttttttggcccttatcttttttaatcttccttcctcttttctctgtgtaaaaatatacgatacagctcgaaatgtattgttttttatatgttcatcggcctgttcttgtttgctataggaagtatatttgataaatagtatgtttcatataggagctttttccctccaatttcttatcatgtatggcatttccaataacttttcgcggtaccgtcacgatggcttgcatgtataagagttagacgggaagggcctgtaactataggaggtaccatgattgtattggattgcttttacttttacaaaacattattttttaataaaaaggaataatactgtatttcgatatcctaatttcttgtattgcaggttatgtattctgtaattcgtcgtgtttggtgtttgtactatatcttgctggtttacagtaggaccctgtgattttatatcatgatttcttgtatagtatttttcattgaatgctttgttgttaatgctgtcccatcaactatttgtaggaccagttgggtctgtcgagtctcataaagaagaggaggtctggttcatcaaacatctccatcaaagcggtagggcttgggagaggccaaaggtatgttttttttcagcttgcattacattgttttcttactagaattcgtggcattcagtggtcttatttactggaattcgttagtatgcactttgttggtatgcactaacagagaaggaccttgttagagagaaaaactgaaaaatcatttgtctgaaaattggttgtgaattttagttctttatatccccgaggaatgcaaatattatctggtttatgtacggcttatttcggtggctttcagatataaaagaagggaaaaaaagagcagtgactgtagcaagtgtggagagttacttaactgaatcaagctcataatcccttttctgaatatgacctaacaacttttttttatagagtttcacaagaaaatactgtgtctatatatttgtaagatagacagaaattgtgtgaagtgtatggaatctgggcccataagctatagaattacatatctatgctgctagctaaaaatgtatacctaataatgttgcacacagttattatctttaaggttgcttgaatcatttatgtctcataatattgttaatttcccttattggtggtctctagctatgattgtatagtaagatgttgcagaacatgaaggtaacagtaggatatacgagattcggccacttattgccatatttccttttaatttgatcaatgcaaatcttgcaaaacaaatattattacacttgtggtcgaagtttattcctcggtagtggtgtaggaagttgtgatactcatattttgtgctctagaatatgtttacatatagtttaattcaggttaaacactaaacactgtccaaattttgagaaaattagggcaaatatgagtagaaaaataattatttgttgaggaatcggaataaatggaaattctttgatgtatggaagaactaaaactaaaataaaatcttagtatgcacactaagatttctccgattttattttgcaattttagaattatggttgtccaatactataaaattcagatacaacatatgccaaattcagaaaatagggtcataaactcatactagctacagtgtacatctactgtaaactaaaatgcaatcttaaaaataaaatcatgtttcctccatttgtgctcaccacaaatgaatcggtccataaaattcctcaatttctcttcctctcccatagtgtgtcctggaattagttttgctgaaagattgtagtgtacgtatgcattgatggctaaacgttttcacatgtgtatttgacagctcatgttcgacttgaagcaaacaggaagctttctccattagaaggaattaaattgatgaagaaggtagcacatactttgataactgccaaagatgcaagcctggctaagtagtcacacgtgaaatggccgtgctcaactctggacttatatagatgagatagctcatttcgagagcatatatcgtggcctattcgatccatttatattaaatttggatgttgaagtgattagatgtaattgtaaagaaatgttttttattgtcaggtaatataatattactaattaactttgcctg
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| CDS seq | cgctcctcctcccacctccaccgaaaatccccaacgcgctctccttcccccaacccagatcgctccgccgcctccctctcccaacctacagcgcgccgtcgcctcccccgccaccacaagcgccgctgcactcccccccggcaaaccctaatcgtcgccacgacctcctcctctctcccctgctgccacccttccgtttcgccgccagcgcgacggctcccctccccaccgaccgcgtcgcgaactcgcgatacgcctccgacgcccgtgcccccctccagcgacagcggcgccacccctcaccgctaccacgcagccggcgcccggtccctcctgccgaccgcgttgcgagacgcctccctcatgattgacgcgctttgttctgggttgggcacagta |
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| Protein seq | RSSSHLHRKSPTRSPSPNPDRSAASLSQPTARRRLPRHHKRRCTPPRQTLIVATTSSSLPCCHPSVSPPARRLPSPPTASRTRDTPPTPVPPSSDSGATPHRYHAAGARSLLPTALRDASLMIDALCSGLGTV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0020770 | OsKeNa_11g0020770.01 | Chr11 | 25503842 | 25507587 | + | NAM | ||
| CDS seq | atgctacatagtgatgacaactgtgccacgaaggcttcttcagatgacaacatggaattcatgattgacatgttacgtttagatgtggaggaccagttgggtctgtcgagtctcataaagaagaggaggtctggttcatcaaacatctccatcaaagcggtagggcttgggagaggccaaagtatgcactttgttgctcatgttcgacttgaagcaaacaggaagctttctccattagaaggaattaaattgatgaagaaggtagcacatactttgataactgccaaagatgcaagcctggctaagtag
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| Protein seq | MLHSDDNCATKASSDDNMEFMIDMLRLDVEDQLGLSSLIKKRRSGSSNISIKAVGLGRGQSMHFVAHVRLEANRKLSPLEGIKLMKKVAHTLITAKDASLAK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0020770 | OsKeNa_11g0020770.02 | Chr11 | 25503439 | 25507642 | + | IsoSeq | ||
| CDS seq | cgctcctcctcccacctccaccgaaaatccccaacgcgctctccttcccccaacccagatcgctccgccgcctccctctcccaacctacagcgcgccgtcgcctcccccgccaccacaagcgccgctgcactcccccccggcaaaccctaatcgtcgccacgacctcctcctctctcccctgctgccacccttccgtttcgccgccagcgcgacggctcccctccccaccgaccgcgtcgcgaactcgcgatacgcctccgacgcccgtgcccccctccagcgacagcggcgccacccctcaccgctaccacgcagccggcgcccggtccctcctgccgaccgcgttgcgagacgcctccctcatgattgacgcgctttgttctgggttgggcacagta
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| Protein seq | RSSSHLHRKSPTRSPSPNPDRSAASLSQPTARRRLPRHHKRRCTPPRQTLIVATTSSSLPCCHPSVSPPARRLPSPPTASRTRDTPPTPVPPSSDSGATPHRYHAAGARSLLPTALRDASLMIDALCSGLGTV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr11 | 25503928 | 25504413 | + | OsKeNa_11g0020770.02 | OsKeNa_11g0020770.02,OsKeNa_11g0020770.01 | All |
| SE | Chr11 | 25504460 | 25504767 | + | OsKeNa_11g0020770.02 | OsKeNa_11g0020770.02,OsKeNa_11g0020770.01 | All |
| SE | Chr11 | 25506087 | 25507346 | + | OsKeNa_11g0020770.01 | OsKeNa_11g0020770.02,OsKeNa_11g0020770.01 | All |
| MX | Chr11 | 25504810 | 25505996 | + | OsKeNa_11g0020770.01 | OsKeNa_11g0020770.02,OsKeNa_11g0020770.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.047848 | 4.111341 | 2.635446 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0020640 | RBH | 5.993658 | 3.668000 | 6.726163 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0021111 | RBH | 0.000000 | 0.0 | 0.144888 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022651 | RBH | 0.725223 | 1.078764 | 1.915657 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0020840 | RBH | 1.154494 | 15.687250 | 12.712525 |
