Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsN22_11G021460		OGI:11072800 \| 15/16			N22 \| OsN22RS2 \| Gramene(+IsoSeq)			Chr11:27424396-27428759		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		RLCK342, OsRLCK342, OsSTA269
DNA seq		ATGGATTTGCAGAGTGTCGTGTCTGCTCGCGTCAATTGGTAAAGATTTTCGTTTCATTTCGTTTGCTTCTGTAAAATCCCATTTGGTTTGTAAATATGCACAGTGAAATCTCCATCAAGAAAGGCTCAGACAGGTCGTCGCGGCGGAGCAGCGACGAGGCGGCGACGCCATCACGACGGCGACCGATATTGCCGGGACGGCGGCGGCGGAGAACAGCTGCGATATTGCCGGGACGGCGGCGACGGCGGCGGTGGCGACGGAGACGACGTCTGGCAGCAGCTCGTTAGACGAGGACGACGCCGACGACGACGAGCTGTGCACGCCGCCGGCGCGACAGCCATGGAAGGGCGTGGCGGAGGCGTGGAGGTCGAGGACCATGCGCCGCCTCCCGTCGCTGGCGCCGACGATGTCGTCGACCCTCCGCCGCTTCAGCATCCGCAGCGGCGCGTGGACACAGTGGCCGAGCGCCGCCGCCGCCGCGGCCGCGGCGCCCGCCGACGGCAGCCAGGCCTGCGCCCTCCGCCCTCCCATCCGCACCTTCTCCCTCTCCGAGCTCAAGAAGGCCACCCGCAACTTCAGCAAAGGTCGCCGCCGCCGCCGCCATCGCCATTAACACATAGCAAGCTCGATCGAGCTCGAATCAAGAACTGATCAATCACGAACACGTGCCCCATGGATGCAGAGAACGTGGTGGGGAGGGGAGGACACGCGAAGGTGTACCGAGGCTGCCTCCCCGGCGGCGAGCTGGTGGCGGTGAAGCGGCTGTCGGCGCCGGAGAGGGGCGGGCGCGTGGAGAGCTTCCTGGCTGAGCTCGGCCACATCGTGAGCCTGAGCCACCCGAACGTCGCGAGGCTCGTCGGCGTCGGCGTGGACGGCGGCGAGCACCTGGTGTTCCCGTTCTCACGCCTCGGCTGCCTCTCCGGGAGGCTCCACGGCGCCGCCGCCGGCGAGGAGGCCATGCCGTGGGCGGCGAGGTTCAGGGTCGCCGTCGGCGCCGCCCGCGGGCTGGAGTACCTCCACGAGCGGTGCGCGCGGCGGATCGTCCACCGCGACGTCAAGCCGGCCAACATCCTCCTCAAAGACGACTACGAGCCAATGGTATCTCTCAACTTAACTCTGGCTTGAATTGCATGCAATATTCTTTTTAAATCCTCCTAATAATCTGGTCATAAATATCTATTACCTCCATTTTATATTATAAATTGTTTTGACTTTTTTTATAATCAAACTTTTTATCAGGTTTGTAGAAAAATTTAGCAATATATCTATCACATAAGATTAATATATTTTGGTGATATGTTTGTTTTTTGTTGAGAATGTTTTTATATTTTTCTATAAACTTAGCCAAACTTAAAATAGTTTAATTAGAAAAAAAGTAAAAACAGCTTATATTATATTATGAAAAGGAGGGAGTAACGTTTAAAATAAGAATCAGTCAAATTTTAAAAATGTAGTAAGTTAACTATAGTACTTCCCGGCGAAAAAAATTAACTATAATACTTTAGAACCGAATATTTATTGTTTATAAAATTTTAATGTTATGATGGTTGTAGTTTTAAAATTTTATCCCAATATTCTCATATAAACATTAAATATTTATAACCGAATGGAGTACTGCATAACTTTTTCAAACATAGTTGTGAATATCAATAATTTGCAGGAATGTCCATTGGTTCAGAAGGGAAAACGTAATTTTGCTTGGGCCTTGCTTAATTCGCAAATTGTGGTTTTGGTTTTTGGGCTTAATTTTCAGATATGTGATTTTGGGCTTGCAAAGTGGCTGCCGGCCAGCATGACGCATCACCAAGTGACCACATTCGAAGGCACATTCGGGTCTGTCTCAAATCACCAAGCACGCACACTTCAATTCAAATGCAAAATTAATGTCGCATTCTGATGATTATTTATGCTCACACGCATTTATAATTAGTCACATCATAATGTTCTCAAAGGAACTAATCAACGATTTATCCAATGAATTTCTTATTAGTAATCTTCCTCTTGATTATGAATGATTAGAGGGGTGTTTGGTTCATTCCCTCATTTTGTCACGCAATATTTATGCCATATCATATTCCCTCCGTCCCGTAATATATGAGATTTTGAGTTTTTGCTTATAGTGTTTGACCACTCGTCTTATTCAAAAAAATTTATGCAAATATAAAAAACGAAAAGTTGTACGTAAAGTACTTTGGATAATAAAGTAGGTCCCAAAAAAGTAAATAATAATCCGAATAAGACGAGTGGTTAAAGAGTGTAAGCAAAAACTTAAAATCCCTTATATTATGGGACGGAGGGAGTACTTTCTTAGCCTTAGGCCATCCTAAATATCATCTAACTATGTTACATTATGGTCAAATATTTTCTAGTCTTCATACCACAATTTATCTAAGATTAGTTGTGGCATCTTTAGACATCATCATACATCCTCTAAGAGTGTGTTTGGTTTCTGGCCACACTTTATCATGTTACACTTTTAGCTGCTATATTTTGTTAAGGTATGTGACTGTCACGGTTATAGCTTGTCACACTTTTTAAATAGTGTGGTTCCACATGTCACATACTGTCACTTTCTTACTAACTTTACCACTCTTTATAGCTAGTACTTTGTTCACCATACTTTTATGAAAATCACAACTTAATTAACCTCAGTTGTAATAAAGTGTGGCCGATAACCAAACACACGATAAATTTGCAGGTACTTGCCACCGGAGTACACATCGCACGGCATCTTCAACGAGAAGACGGACGTGTTCGCCTACGGCGTCGTGCTGCTGGAGCTCCTCACCGGCCGCCGCGCCATTGACGCCAAGAAGCTCAGCCTCCTCACTTGGGTACGTAATTAATTAATTATTTCACTCCGACCTTAAAATAATTAGGCTACCAACCAACCATCTTCTTCTTCTACCTCCGGCATCCGTACACTCTTCGACATACCGTTAGTTATTTCTGCATGTGCACGGATGCAATATGCAACCAATCATGGAGTGATGATCATTCATGGCGGCGTGCGTGTCCGCGTGATCCACCGCGTGTCATCGTCTCTGCAGGCCAGGCCGTTCCTGTACGGAGGAGGCGGTGATGGCGACGATGATGACGACGACGCGGTGAGGATGATGGTGGATCCTGCTCTCGGCGGCCAGTACGACGCCGGGCAGCTCGCCGCCGTCGCCTACGCCGCCAAGATCTGCATACAGAACTCGCCGGAGCTCAGGCCCAAAATGAGCGAGGTACGTTCAGTGCTACAGAAATGATTTTCACAAACAGTCAAAACTCGTTTTCAAGTCAGGTGGGCATGCCCGCCTTGCTTCAGTTGTGTGAAACATCGGTACTTTCACGTGCAGACGTTACAACCACACGTGAAAACCCATTTCGTAGGTAGACTTCCTAAGGAGGCCGCTTGTAAAAACCAATTTTTTAAGCGGCCAAGGCTAGACTGCAATGATTTTTTTCAAAAAGAAAGGACAAATCCAAAACCCTAACCAGGATCGTCATGAGGCCGTCGACATCACGTGGTCGAGGTCAATGTTGAGGTTGGCACGATCATCGACGCTGCTCCTGTGCTCGCCGGTGGTGGATCCACTGCTCCCAAGGCTGGCAGGGACGGATCCGCCCCTCCTAACTAGGACGTGGCGTCGCCGCCGCCGCTCCCAAGGCCACCGCTGCCAATCCTGAGGCCGTTGCTCTCGATGCCACCGTCCGTCATCGATGAGAGGAACCGATGAGTGGTCGTTAGCTGTGTTTCTAGAGTTCATCCTTTTGGAGGGCTATTTGTGGTCGTTAGCTGGCACTACTACTTTTGGGGGAGTTCTTTGGAGTGTAGTGTGGCTCATCCCCCCTTCTCGCTGATTGGAGATGCGTTTAGCCGTCGTAGTAATTCATTTTCCTTGGTTTTGTTTTTTCTCCCTTCCCCTAGCATAAGTTGGTCTGGCTGATTACGTTGTGTAAGAAAAACTATTTTCTTTTAATGTATTGACGTGTAATCTTTTTACGTGTTCGCGAAAAAAATCGATGAGAGGAACCGAGGCACCCGCTATTTTTTGGGATGATATTTATGCAAATCAATATGGTTATTAAGTAAGAATAATTAGTCTTGATTGCGTTAGAATGTAAAACGATTGATCTTGCTTGTGTAGGTTACACAGATACTCCAAGAAAACGAAGAGGATCGACGAAGTGTGGAGGGGTCTAGGAGGACTTTCATCTTGGATCGCACCGTTGAGATGCACGAAACGAACGGCCAGGATTCCGCGACGAGACGACAGCTGGACGATCTGAGGCGCCACATGGCGCTCGCCTTCGATTTCGAATGTGAGCACACGTCATCAGCAGAAATAGAACAACTCTCTGATCACAGTAATTAG More
CDS seq		ATGGATTTGCAGAGTGTCGTGTCTGCTCGCGTCAATTGGCTCAGACAGGTCGTCGCGGCGGAGCAGCGACGAGGCGGCGACGCCATCACGACGGCGACCGATATTGCCGGGACGGCGGCGGCGGAGAACAGCTGCGATATTGCCGGGACGGCGGCGACGGCGGCGGTGGCGACGGAGACGACGTCTGGCAGCAGCTCGTTAGACGAGGACGACGCCGACGACGACGAGCTGTGCACGCCGCCGGCGCGACAGCCATGGAAGGGCGTGGCGGAGGCGTGGAGGTCGAGGACCATGCGCCGCCTCCCGTCGCTGGCGCCGACGATGTCGTCGACCCTCCGCCGCTTCAGCATCCGCAGCGGCGCGTGGACACAGTGGCCGAGCGCCGCCGCCGCCGCGGCCGCGGCGCCCGCCGACGGCAGCCAGGCCTGCGCCCTCCGCCCTCCCATCCGCACCTTCTCCCTCTCCGAGCTCAAGAAGGCCACCCGCAACTTCAGCAAAGAGAACGTGGTGGGGAGGGGAGGACACGCGAAGGTGTACCGAGGCTGCCTCCCCGGCGGCGAGCTGGTGGCGGTGAAGCGGCTGTCGGCGCCGGAGAGGGGCGGGCGCGTGGAGAGCTTCCTGGCTGAGCTCGGCCACATCGTGAGCCTGAGCCACCCGAACGTCGCGAGGCTCGTCGGCGTCGGCGTGGACGGCGGCGAGCACCTGGTGTTCCCGTTCTCACGCCTCGGCTGCCTCTCCGGGAGGCTCCACGGCGCCGCCGCCGGCGAGGAGGCCATGCCGTGGGCGGCGAGGTTCAGGGTCGCCGTCGGCGCCGCCCGCGGGCTGGAGTACCTCCACGAGCGGTGCGCGCGGCGGATCGTCCACCGCGACGTCAAGCCGGCCAACATCCTCCTCAAAGACGACTACGAGCCAATGATATGTGATTTTGGGCTTGCAAAGTGGCTGCCGGCCAGCATGACGCATCACCAAACGGACGTGTTCGCCTACGGCGTCGTGCTGCTGGAGCTCCTCACCGGCCGCCGCGCCATTGACGCCAAGAAGCTCAGCCTCCTCACTTGGGCTACCAACCAACCATCTTCTTCTTCTACCTCCGGCATCCGTACACTCTTCGACATACCGTTAGTTATTTCTGCATGTGCACGGATGCAATATGCAACCAATCATGGAGTGATGATCATTCATGGCGGCGTGCGTGTCCGCGTGATCCACCGCGTGTCATCGTCTCTGCAGGCCAGGCCGTTCCTGTACGGAGGAGGCGGTGATGGCGACGATGATGACGACGACGCGGTGAGGATGATGGTGGATCCTGCTCTCGGCGGCCAGTACGACGCCGGGCAGCTCGCCGCCGTTACACAGATACTCCAAGAAAACGAAGAGGATCGACGAAGTGTGGAGGGGTCTAGGAGGACTTTCATCTTGGATCGCACCGTTGAGATGCACGAAACGAACGGCCAGGATTCCGCGACGAGACGACAGCTGGACGATCTGAGGCGCCACATGGCGCTCGCCTTCGATTTCGAATGTGAGCACACGTCATCAGCAGAAATAGAACAACTCTCTGATCACAGTAATTAG More
Protein seq		MDLQSVVSARVNWLRQVVAAEQRRGGDAITTATDIAGTAAAENSCDIAGTAATAAVATETTSGSSSLDEDDADDDELCTPPARQPWKGVAEAWRSRTMRRLPSLAPTMSSTLRRFSIRSGAWTQWPSAAAAAAAAPADGSQACALRPPIRTFSLSELKKATRNFSKENVVGRGGHAKVYRGCLPGGELVAVKRLSAPERGGRVESFLAELGHIVSLSHPNVARLVGVGVDGGEHLVFPFSRLGCLSGRLHGAAAGEEAMPWAARFRVAVGAARGLEYLHERCARRIVHRDVKPANILLKDDYEPMICDFGLAKWLPASMTHHQTDVFAYGVVLLELLTGRRAIDAKKLSLLTWATNQPSSSSTSGIRTLFDIPLVISACARMQYATNHGVMIIHGGVRVRVIHRVSSSLQARPFLYGGGGDGDDDDDDAVRMMVDPALGGQYDAGQLAAVTQILQENEEDRRSVEGSRRTFILDRTVEMHETNGQDSATRRQLDDLRRHMALAFDFECEHTSSAEIEQLSDHSN
Function		Receptor-like cytosolic serine/threonine-protein kinase RBK2 [UniProtKB/Swiss-Prot:Q8RXC8]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsN22_11G021460	OsN22_11G021460_01	Chr11	27424396	27428759	+	NAM
CDS seq	ATGGATTTGCAGAGTGTCGTGTCTGCTCGCGTCAATTGGCTCAGACAGGTCGTCGCGGCGGAGCAGCGACGAGGCGGCGACGCCATCACGACGGCGACCGATATTGCCGGGACGGCGGCGGCGGAGAACAGCTGCGATATTGCCGGGACGGCGGCGACGGCGGCGGTGGCGACGGAGACGACGTCTGGCAGCAGCTCGTTAGACGAGGACGACGCCGACGACGACGAGCTGTGCACGCCGCCGGCGCGACAGCCATGGAAGGGCGTGGCGGAGGCGTGGAGGTCGAGGACCATGCGCCGCCTCCCGTCGCTGGCGCCGACGATGTCGTCGACCCTCCGCCGCTTCAGCATCCGCAGCGGCGCGTGGACACAGTGGCCGAGCGCCGCCGCCGCCGCGGCCGCGGCGCCCGCCGACGGCAGCCAGGCCTGCGCCCTCCGCCCTCCCATCCGCACCTTCTCCCTCTCCGAGCTCAAGAAGGCCACCCGCAACTTCAGCAAAGAGAACGTGGTGGGGAGGGGAGGACACGCGAAGGTGTACCGAGGCTGCCTCCCCGGCGGCGAGCTGGTGGCGGTGAAGCGGCTGTCGGCGCCGGAGAGGGGCGGGCGCGTGGAGAGCTTCCTGGCTGAGCTCGGCCACATCGTGAGCCTGAGCCACCCGAACGTCGCGAGGCTCGTCGGCGTCGGCGTGGACGGCGGCGAGCACCTGGTGTTCCCGTTCTCACGCCTCGGCTGCCTCTCCGGGAGGCTCCACGGCGCCGCCGCCGGCGAGGAGGCCATGCCGTGGGCGGCGAGGTTCAGGGTCGCCGTCGGCGCCGCCCGCGGGCTGGAGTACCTCCACGAGCGGTGCGCGCGGCGGATCGTCCACCGCGACGTCAAGCCGGCCAACATCCTCCTCAAAGACGACTACGAGCCAATGATATGTGATTTTGGGCTTGCAAAGTGGCTGCCGGCCAGCATGACGCATCACCAAACGGACGTGTTCGCCTACGGCGTCGTGCTGCTGGAGCTCCTCACCGGCCGCCGCGCCATTGACGCCAAGAAGCTCAGCCTCCTCACTTGGGCTACCAACCAACCATCTTCTTCTTCTACCTCCGGCATCCGTACACTCTTCGACATACCGTTAGTTATTTCTGCATGTGCACGGATGCAATATGCAACCAATCATGGAGTGATGATCATTCATGGCGGCGTGCGTGTCCGCGTGATCCACCGCGTGTCATCGTCTCTGCAGGCCAGGCCGTTCCTGTACGGAGGAGGCGGTGATGGCGACGATGATGACGACGACGCGGTGAGGATGATGGTGGATCCTGCTCTCGGCGGCCAGTACGACGCCGGGCAGCTCGCCGCCGTTACACAGATACTCCAAGAAAACGAAGAGGATCGACGAAGTGTGGAGGGGTCTAGGAGGACTTTCATCTTGGATCGCACCGTTGAGATGCACGAAACGAACGGCCAGGATTCCGCGACGAGACGACAGCTGGACGATCTGAGGCGCCACATGGCGCTCGCCTTCGATTTCGAATGTGAGCACACGTCATCAGCAGAAATAGAACAACTCTCTGATCACAGTAATTAG More
Protein seq	MDLQSVVSARVNWLRQVVAAEQRRGGDAITTATDIAGTAAAENSCDIAGTAATAAVATETTSGSSSLDEDDADDDELCTPPARQPWKGVAEAWRSRTMRRLPSLAPTMSSTLRRFSIRSGAWTQWPSAAAAAAAAPADGSQACALRPPIRTFSLSELKKATRNFSKENVVGRGGHAKVYRGCLPGGELVAVKRLSAPERGGRVESFLAELGHIVSLSHPNVARLVGVGVDGGEHLVFPFSRLGCLSGRLHGAAAGEEAMPWAARFRVAVGAARGLEYLHERCARRIVHRDVKPANILLKDDYEPMICDFGLAKWLPASMTHHQTDVFAYGVVLLELLTGRRAIDAKKLSLLTWATNQPSSSSTSGIRTLFDIPLVISACARMQYATNHGVMIIHGGVRVRVIHRVSSSLQARPFLYGGGGDGDDDDDDAVRMMVDPALGGQYDAGQLAAVTQILQENEEDRRSVEGSRRTFILDRTVEMHETNGQDSATRRQLDDLRRHMALAFDFECEHTSSAEIEQLSDHSN More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	0.000000

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_11g0644000	RBH	0.0	0.0	0.315740
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os11g42440	RBH	0.0	0.0	0.066307
Nipponbare \| IRGSP 1.0 \| RAP-db	Os11g0644000	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_11g0021820	RBH	0.0	0.0	0.246864
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_11g0021780	RBH	0.0	0.0	0.174910
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_11g0021620	RBH	0.0	0.0	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_11g0021130	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_11g0021630	RBH	0.0	0.0	0.000000
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_11G0384300	SBH	0.021715	0.020706	0.009399
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_11g0022200	RBH	0.0	0.0	0.000000
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_11G0404400	RBH	0.005007	0.0085405	0.0224165
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_11g0021970	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_11g0022080	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_11g0021730	RBH	0.0	12.334360	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_11g0021320	RBH	0.0	0.0	0.000000
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_11g0021480	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_11g0022020	RBH	0.0	0.0	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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