Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0021970 | OGI:11072800 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:27717355-27721608 | ||||||||
| Gene Symbol | RLCK342, OsRLCK342, OsSTA269 | ||||||||||
| DNA seq | aggctcagacaggtcgtcgcggcggagcagcgacgaggcggcgacgccatcacgacggcgaccgatattgccgggacggcggcggcggagaacagctgcgatattgccgggacggcggcgacggcggcggtggcgacggagacgacgtctggcagcagctcgttagacgacgacgacgccgacgacgacgagctgtgcacgccgccggcgcgacagccatggaagggcgtggcggaggcgtggaggtcgaggaccatgcgccgcctcccgtcgctggcgccgacgatgtcgtcgaccctccgccgcttcagcatccgcagcggcgcgtggccacagtggccgagcgccgccgccgccgcggccgcggcgcccgccgacggcagccaggcctgcgccctccgccctcccatccgcaccttctccctctccgagctcaagaaggccacccgcaacttcagcaaaggtcgccgccgccgccgccatcgccattaacacatagcaagctcgatcgagctcgaatcaagaactgatcgatcacgaacacgtgccccatggatgcagagaacgtggtggggaggggaggacacgcgaaggtgtaccgaggctgcctccccggcggcgagctggtggcggtgaagcggctgtcggcgccggagaggggcgggcgcgtggagagcttcctggctgagctcggccacatcgtgagcctgagccacccgaacgtcgcgaggctcgtcggcgtcggcgtggacggcggcgagcacctggtgttcccgttctcacgcctcggctgcctctccgggaggctccacggcgccgccgccggcgaggaggccatgccgtgggcggcgaggttcagggtcgccgtcggcgccgCccgcgggctggagtacctccacgagcggtgcgcgcggcggatcgtccaccgcgacgtcaagccggccaacatcctcctcaaagacgactacgagccaatggtatctctcaacttaactctggcttgaattgcatgcaatattctttttaaatcctcctaataatctggtcataaatatctattacctccattttatattataaattgttttgacttttttttataatcaaactttttatcaggtttatagaaaaatttagcaATatatctatcacataagattaatatattttggtgatatgtttgTttttttgttgagaatgtttttatatttttctataaacttagtcaaacttaaaatagtttaattagaaaaaaagtaaaaacagcttatattatattatgaaaaggagggagtaacgtttaaaataagaatcagtcaaaTtttaaaaatgtagtaagttaactataatacttcccggcgaaaaaaattaactataatactttagaaccgaatatttattgtttataaaattttaatgttatgatggttgtagttttaaaattttatccgaatattctcatataaacattaaatatttataaccgaatggagtactgcataactttttcaaacatagttgtgaatatcaataatttgcaggaatgtccattggttcagaagggaaaacgtaattttgcttgggccttgcttaattcgcaaattgtggttttggtttttgggcttaattttcagatatgTGAttttgggcttgcaaagtggctgccggccagcatgacgcatcaccaagtgaccacattcgaaggcacattcgggtctgtctcaaatcaccaagcacgcacacttcaattcaaatgcaaaattaatgtcgcattctgatgattatttatgctcacacgcatttataattagtcacatcataatgttctcaaaggaactaatcaacgatttatccaatgaatttcttattagtaatcttcctcttgattatgaatgattagaggggtgtttggttcattccctcattttgtcacgcaatatttatgccatatcatattccctccgtcccgtaatatatgagattttaagtttttgcttatagtgtttaaccactcgtcttattcaaaaaatttatgcaaatataaaaaacgaaaagttgtacgtaaagtactttggataataaagtaggtcccaaaaaagtaaataataatctcaaaattttttgaataagacgagtggttaaagagtgtaagcaaaaactcaaaatctcttatattatgggacggagggagtactttcttagccttaggccatcctaaatatcatctaactatgttacattatggtcaaatattttctagtcttcataccacaatttatctaagattagttgtggcatctttagacatcatcatacatcctctaagagtgtgtttggtttctggccacacTttatcatgttatacttttagctgctatattttgttaggtatgtgactgtcacggttatagcttgtcacactttttaaatagtgtggttccacatgtcacgtactgccactttcttactaactttaccactctttatggctagtattttgttcaccatacttttatgaaaatcacaacttaattaacctcagttgtaataaagtgtggccgataaccaaacacacgataaatttgcaggtacttgccaccggagtacacgtcgcacggcatcttcaacgagaagacggacgtgttcgcctacggcgtcgtgctgctggAgctcctcaccggccgccgcgccattgacgccaagaagctcagcctcctcacttgggtacgtaattaattaattatttcactccgaccttaaattaattaggctaccaaccaaccatcttcttcttctacctccggcatccgtacactcttcgacataccgttagttatttctgcatgtgcacggatgcaataagcaaccaatcatggagtgatgatcattcatggcggcgtgcgtgtccgcgtgatccaccgcgtgtcatcgtctctgcaggccaggccgttcctgtacggaggaggcggtgatggcgacgatgatgacgacgacgcggtgaggatgatggtggatcctgctctcggcggccagtacgacgccgggcagctcgccgccgtcgcctacgccgccaagatctgcatacagaactcgccggagctcaggcccAaaatgagcgaggtacgttcactgctacagaaatgattttcacaaacagtcaaaactcgttttcaagtcaggtgggcatgcccgccttgcttcagttgtgtgaaacatcggtactttcacgtgcagatgttacaaccacatgtgaaaacccatttcataggtagacttcctaaggaggccgcttgtaaaaaccaaTtttttaagcggccaagactagaatgcaatgaattttttcaaaaagaaaggacaaatccaaaaccctaaccaggatcgccgtgaggccgtcgacatcacatggtcaaggtcaatgttgaggttggcacgatcatcGAcgctgctcctgtgctcgtcggtggtggatccactgctCccaaggttggcggggacggatccgcccctcctaactaggacatggcgtcgccgccgctgctcccaaggccaCcgctgccaatcctgaggccgttgctctcgatgccaccgtccgtcatcgatgagaggaaccgatgagtggtcgttagctgtgtttctagagttcatccttttggagggctatttgtggttgttagctggcactactacttttgggggagttctttggagtgtagtgtggctcatccccccttctcgctgattggagatgcgtttagctgtcgtagtagttcattttccttagttttgttttttctcccttcccctagcataagttggtctggctgattatgttgtgtaagaaaaactcttttcttttaatatattgacgtgtaatctttttacgtgttcgcgaaaaaaatcgatgagaggaaccgaggcacccgctattgtttgggatgatatttatgcaaatcaatatggttattaagtaagaataattagtcttgattgcgttaggatgtaaaacgattgatcttgcttgtgtaggttacacagatactccaagaaaacgaagaggatcgacgaagtgtggaggggtctaggaggactttcaccttggatcgcaccgttgagatgcacgaaacgaacggccaggattccacgacgagacgacagctggacgatctgaggcgccacatggcgctcgccttcgatttcgaatgtgagcacacgtcatcggcagaaatagaacaactctctgatcacagtaattag
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| CDS seq | atgcgccgcctcccgtcgctggcgccgacgatgtcgtcgaccctccgccgcttcagcatccgcagcggcgcgtggccacagtggccgagcgccgccgccgccgcggccgcggcgcccgccgacggcagccaggcctgcgccctccgccctcccatccgcaccttctccctctccgagctcaagaaggccacccgcaacttcagcaaagagaacgtggtggggaggggaggacacgcgaaggtgtaccgaggctgcctccccggcggcgagctggtggcggtgaagcggctgtcggcgccggagaggggcgggcgcgtggagagcttcctggctgagctcggccacatcgtgagcctgagccacccgaacgtcgcgaggctcgtcggcgtcggcgtggacggcggcgagcacctggtgttcccgttctcacgcctcggctgcctctccgggaggctccacggcgccgccgccggcgaggaggccatgccgtgggcggcgaggttcagggtcgccgtcggcgccgCccgcgggctggagtacctccacgagcggtgcgcgcggcggatcgtccaccgcgacgtcaagccggccaacatcctcctcaaagacgactacgagccaatggccaggccgttcctgtacggaggaggcggtgatggcgacgatgatgacgacgacgcggttacacagatactccaagaaaacgaagaggatcgacgaagtgtggaggggtctaggaggactttcaccttggatcgcaccgttgagatgcacgaaacgaacggccaggattccacgacgagacgacagctggacgatctgaggcgccacatggcgctcgccttcgatttcgaatgtgagcacacgtcatcggcagaaatagaacaactctctgatcacagtaattag
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| Protein seq | MRRLPSLAPTMSSTLRRFSIRSGAWPQWPSAAAAAAAAPADGSQACALRPPIRTFSLSELKKATRNFSKENVVGRGGHAKVYRGCLPGGELVAVKRLSAPERGGRVESFLAELGHIVSLSHPNVARLVGVGVDGGEHLVFPFSRLGCLSGRLHGAAAGEEAMPWAARFRVAVGAARGLEYLHERCARRIVHRDVKPANILLKDDYEPMARPFLYGGGGDGDDDDDDAVTQILQENEEDRRSVEGSRRTFTLDRTVEMHETNGQDSTTRRQLDDLRRHMALAFDFECEHTSSAEIEQLSDHSN |
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| Function | Receptor-like cytosolic serine/threonine-protein kinase RBK2 [UniProtKB/Swiss-Prot:Q8RXC8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0021970 | OsLima_11g0021970.01 | Chr11 | 27717355 | 27721608 | + | NAM | ||
| CDS seq | atgcgccgcctcccgtcgctggcgccgacgatgtcgtcgaccctccgccgcttcagcatccgcagcggcgcgtggccacagtggccgagcgccgccgccgccgcggccgcggcgcccgccgacggcagccaggcctgcgccctccgccctcccatccgcaccttctccctctccgagctcaagaaggccacccgcaacttcagcaaagagaacgtggtggggaggggaggacacgcgaaggtgtaccgaggctgcctccccggcggcgagctggtggcggtgaagcggctgtcggcgccggagaggggcgggcgcgtggagagcttcctggctgagctcggccacatcgtgagcctgagccacccgaacgtcgcgaggctcgtcggcgtcggcgtggacggcggcgagcacctggtgttcccgttctcacgcctcggctgcctctccgggaggctccacggcgccgccgccggcgaggaggccatgccgtgggcggcgaggttcagggtcgccgtcggcgccgCccgcgggctggagtacctccacgagcggtgcgcgcggcggatcgtccaccgcgacgtcaagccggccaacatcctcctcaaagacgactacgagccaatggccaggccgttcctgtacggaggaggcggtgatggcgacgatgatgacgacgacgcggttacacagatactccaagaaaacgaagaggatcgacgaagtgtggaggggtctaggaggactttcaccttggatcgcaccgttgagatgcacgaaacgaacggccaggattccacgacgagacgacagctggacgatctgaggcgccacatggcgctcgccttcgatttcgaatgtgagcacacgtcatcggcagaaatagaacaactctctgatcacagtaattag
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| Protein seq | MRRLPSLAPTMSSTLRRFSIRSGAWPQWPSAAAAAAAAPADGSQACALRPPIRTFSLSELKKATRNFSKENVVGRGGHAKVYRGCLPGGELVAVKRLSAPERGGRVESFLAELGHIVSLSHPNVARLVGVGVDGGEHLVFPFSRLGCLSGRLHGAAAGEEAMPWAARFRVAVGAARGLEYLHERCARRIVHRDVKPANILLKDDYEPMARPFLYGGGGDGDDDDDDAVTQILQENEEDRRSVEGSRRTFTLDRTVEMHETNGQDSTTRRQLDDLRRHMALAFDFECEHTSSAEIEQLSDHSN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0644000 | RBH | 0.0 | 0.0 | 0.315740 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g42440 | RBH | 0.0 | 0.0 | 0.066307 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0644000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021820 | RBH | 0.0 | 0.0 | 0.246864 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021780 | RBH | 0.0 | 0.0 | 0.174910 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021620 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021130 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021640 | RBH | 0.0 | 0.0 | 1.372354 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0384300 | SBH | 0.021715 | 0.020706 | 0.009399 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0022200 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0404400 | RBH | 0.005007 | 0.0085405 | 0.0224165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022070 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021720 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021310 | RBH | 0.0 | 0.0 | 0.177931 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021480 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G021460 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022030 | RBH | 0.0 | 0.0 | 0.0 |
