Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_10G012050 | OGI:10050240 | 15/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr10:17075657-17077571 | ||||||||
| Gene Symbol | CCX3, OsCCX3, OsNCX11, NCX11 | ||||||||||
| DNA seq | ATTATGCATGGCAAAGCCTTCTGCCACGTCGGCGGCGGCGGCGCCGCCGGCGGCGAGGGTGCTGATCGGTGCCAGCGTCAACGTGGCCTTCTTGCTCCTGCTCGCCTTCTTCTTCTTCATCTCGCCACGCGGCGGCTCGCCGCCGGAGGTGGTTTCGTCGTCGAAGGAGGTCGGGATCCGGGGGCGTCGCGATGGCGGCGGCGGCGGCGGCGGCGGCGTGTTCCGGGTTGAGAGCTACGGGGAGAGGTGCGAGCACGTCGGCGAGGAGGATGGCCTTGATCGCCTGCGATTCCCGCGTGGCTACGTCGACTACCTGTACCTGTTCGACTGCGTGTTCGGCGAGGAGCGGCGGGTTCTTGGCTACGCCGTGATGGCGGCGTGGCTCGCCGTGCTGTTCTACCTGCTCGGCGACACGGCGGCGGTGTACTTCTGCTCCAGCCTCGAGGGCCTCTCGCGGCTGCTCCGCCTCTCCCCGGCGATCGCCGGCGTGACGCTCCTGTCGCTCGGGAACGGCGCGCCCGACGCGCTCTCCACCATCGCGTCGTTCGCCTCCGGCGGCGGGGGAGAGGGGGAGACCACCGCCGTGGGGCTCAACGGCGTGCTGGGGAGCGCGATGCTCGTGTCCTCCGCGGTGCTCGGCGTCATCGGCGTCCGCCTCGGCGCGCGCGGGGTCGCCGTGGACAGGGTGGACTTCTACCGCGACGCGTCTTTCCTCCTCGCCGCCCTCGCCGCCGTGGCCGTCGTCCTCGCCGCCGGCGAGGTGACAATCTGGGGCGCCCTCGCCTTCACCTCCCTCTACGTCGTCTACGTCGTCGTCGTCGCCTTCACCCACGGCCGCGCCCCGAGCAAAGGCCACGGCGCGGAGGCGGACCACACGGCGGACGCCTTCTCCGAGCTCTGCAACGTCGCAGAGACGAAGTTCTACGGCGACCAAGAACCACTCCTCCCCGACACTGCACCGCTACTCAGGTACTACCCCGGCGACGGCGACGGCGACGGAGGCGGCGGCGGCTCCAAGAAGAAGATCAGGAGCGCGTTCTGGTCGGTGTTGCGCGCGCTGGAGCTCCCACTATGGCTTCCACGGCGGCTGACCATCCCGGACGCGAGCAAGGAGCGGTGGAGCAAGCCGGCGGCGGTGACCGCGGTCACCATGGCGCCCGTCCTCCTCTCCCACCTCTGCAGCCGCGCCACCGGCATCACCTCGCCCCTCGCCGTCCTCCTCGGCGTCCTCGCCGGCGCGTCCCTCGGCGCCGTCGCCTTCTTCACCACCTCCCCGGACGCGCCCCCAGCCGACCACCTCGCCGCCTGGCTCGCCGCCGGGTTCGTCATGAGCGTGGCCTGGGCGTACGCCGTGGCGACCGAGCTCCTCGCGCTGCTGGTCTCCGCGGCGCACGTCATGGGCGTCGACTCGGCGGCGCTGGGGCTCACCGTGCTCGCGTGGGGGAACTCCCTGGGCGACCTCGTCGCCAACCTCGCCGTGGCGTCGCGCGGCGGCGGCGGCGGGGGCGCGCAGGTGGCCGTGGCCGGGTGCTACGGCGGGCCGGTGTTCGACGTGCTCGTGGGCCTCGGCGTGTCGATGTTGCTGTCGTCGTGGGCCTCGCATCCGCGGCCCGTGGCAATGCCGGCGGAGGCCGGCCCATTCCAGACGCTGGGCTTCGCCGCCGCGGGGATTTGCTGGGCCGTGGTGGTGATGTCCAGGAGAGGGATGAGGGTGGACAGGACGCTGGGGTTTGGGCTCCTGGCCATTTACTTGTGCTTTCTTTGCATCAACATTTCTCAGGCACTTGGACCAGTATGAACTTTTTTTATTTTTTTTATTCTTTTCATAAGGGGCCCGGTTGGCCACCATTTTGTGTTGGCCCCTCCGCGCATTGCAACGGAAATTTTAAGGGAAATGTTACAGGACGGTATACAG
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| CDS seq | ATGGCAAAGCCTTCTGCCACGTCGGCGGCGGCGGCGCCGCCGGCGGCGAGGGTGCTGATCGGTGCCAGCGTCAACGTGGCCTTCTTGCTCCTGCTCGCCTTCTTCTTCTTCATCTCGCCACGCGGCGGCTCGCCGCCGGAGGTGGTTTCGTCGTCGAAGGAGGTCGGGATCCGGGGGCGTCGCGATGGCGGCGGCGGCGGCGGCGGCGGCGTGTTCCGGGTTGAGAGCTACGGGGAGAGGTGCGAGCACGTCGGCGAGGAGGATGGCCTTGATCGCCTGCGATTCCCGCGTGGCTACGTCGACTACCTGTACCTGTTCGACTGCGTGTTCGGCGAGGAGCGGCGGGTTCTTGGCTACGCCGTGATGGCGGCGTGGCTCGCCGTGCTGTTCTACCTGCTCGGCGACACGGCGGCGGTGTACTTCTGCTCCAGCCTCGAGGGCCTCTCGCGGCTGCTCCGCCTCTCCCCGGCGATCGCCGGCGTGACGCTCCTGTCGCTCGGGAACGGCGCGCCCGACGCGCTCTCCACCATCGCGTCGTTCGCCTCCGGCGGCGGGGGAGAGGGGGAGACCACCGCCGTGGGGCTCAACGGCGTGCTGGGGAGCGCGATGCTCGTGTCCTCCGCGGTGCTCGGCGTCATCGGCGTCCGCCTCGGCGCGCGCGGGGTCGCCGTGGACAGGGTGGACTTCTACCGCGACGCGTCTTTCCTCCTCGCCGCCCTCGCCGCCGTGGCCGTCGTCCTCGCCGCCGGCGAGGTGACAATCTGGGGCGCCCTCGCCTTCACCTCCCTCTACGTCGTCTACGTCGTCGTCGTCGCCTTCACCCACGGCCGCGCCCCGAGCAAAGGCCACGGCGCGGAGGCGGACCACACGGCGGACGCCTTCTCCGAGCTCTGCAACGTCGCAGAGACGAAGTTCTACGGCGACCAAGAACCACTCCTCCCCGACACTGCACCGCTACTCAGGTACTACCCCGGCGACGGCGACGGCGACGGAGGCGGCGGCGGCTCCAAGAAGAAGATCAGGAGCGCGTTCTGGTCGGTGTTGCGCGCGCTGGAGCTCCCACTATGGCTTCCACGGCGGCTGACCATCCCGGACGCGAGCAAGGAGCGGTGGAGCAAGCCGGCGGCGGTGACCGCGGTCACCATGGCGCCCGTCCTCCTCTCCCACCTCTGCAGCCGCGCCACCGGCATCACCTCGCCCCTCGCCGTCCTCCTCGGCGTCCTCGCCGGCGCGTCCCTCGGCGCCGTCGCCTTCTTCACCACCTCCCCGGACGCGCCCCCAGCCGACCACCTCGCCGCCTGGCTCGCCGCCGGGTTCGTCATGAGCGTGGCCTGGGCGTACGCCGTGGCGACCGAGCTCCTCGCGCTGCTGGTCTCCGCGGCGCACGTCATGGGCGTCGACTCGGCGGCGCTGGGGCTCACCGTGCTCGCGTGGGGGAACTCCCTGGGCGACCTCGTCGCCAACCTCGCCGTGGCGTCGCGCGGCGGCGGCGGCGGGGGCGCGCAGGTGGCCGTGGCCGGGTGCTACGGCGGGCCGGTGTTCGACGTGCTCGTGGGCCTCGGCGTGTCGATGTTGCTGTCGTCGTGGGCCTCGCATCCGCGGCCCGTGGCAATGCCGGCGGAGGCCGGCCCATTCCAGACGCTGGGCTTCGCCGCCGCGGGGATTTGCTGGGCCGTGGTGGTGATGTCCAGGAGAGGGATGAGGGTGGACAGGACGCTGGGGTTTGGGCTCCTGGCCATTTACTTGTGCTTTCTTTGCATCAACATTTCTCAGGCACTTGGACCAGTATGA
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| Protein seq | MAKPSATSAAAAPPAARVLIGASVNVAFLLLLAFFFFISPRGGSPPEVVSSSKEVGIRGRRDGGGGGGGGVFRVESYGERCEHVGEEDGLDRLRFPRGYVDYLYLFDCVFGEERRVLGYAVMAAWLAVLFYLLGDTAAVYFCSSLEGLSRLLRLSPAIAGVTLLSLGNGAPDALSTIASFASGGGGEGETTAVGLNGVLGSAMLVSSAVLGVIGVRLGARGVAVDRVDFYRDASFLLAALAAVAVVLAAGEVTIWGALAFTSLYVVYVVVVAFTHGRAPSKGHGAEADHTADAFSELCNVAETKFYGDQEPLLPDTAPLLRYYPGDGDGDGGGGGSKKKIRSAFWSVLRALELPLWLPRRLTIPDASKERWSKPAAVTAVTMAPVLLSHLCSRATGITSPLAVLLGVLAGASLGAVAFFTTSPDAPPADHLAAWLAAGFVMSVAWAYAVATELLALLVSAAHVMGVDSAALGLTVLAWGNSLGDLVANLAVASRGGGGGGAQVAVAGCYGGPVFDVLVGLGVSMLLSSWASHPRPVAMPAEAGPFQTLGFAAAGICWAVVVMSRRGMRVDRTLGFGLLAIYLCFLCINISQALGPV |
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| Function | Cation/calcium exchanger 1 [UniProtKB/Swiss-Prot:Q9FKP1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_10G012050 | OsN22_10G012050_01 | Chr10 | 17075657 | 17077571 | + | NAM | ||
| CDS seq | ATGGCAAAGCCTTCTGCCACGTCGGCGGCGGCGGCGCCGCCGGCGGCGAGGGTGCTGATCGGTGCCAGCGTCAACGTGGCCTTCTTGCTCCTGCTCGCCTTCTTCTTCTTCATCTCGCCACGCGGCGGCTCGCCGCCGGAGGTGGTTTCGTCGTCGAAGGAGGTCGGGATCCGGGGGCGTCGCGATGGCGGCGGCGGCGGCGGCGGCGGCGTGTTCCGGGTTGAGAGCTACGGGGAGAGGTGCGAGCACGTCGGCGAGGAGGATGGCCTTGATCGCCTGCGATTCCCGCGTGGCTACGTCGACTACCTGTACCTGTTCGACTGCGTGTTCGGCGAGGAGCGGCGGGTTCTTGGCTACGCCGTGATGGCGGCGTGGCTCGCCGTGCTGTTCTACCTGCTCGGCGACACGGCGGCGGTGTACTTCTGCTCCAGCCTCGAGGGCCTCTCGCGGCTGCTCCGCCTCTCCCCGGCGATCGCCGGCGTGACGCTCCTGTCGCTCGGGAACGGCGCGCCCGACGCGCTCTCCACCATCGCGTCGTTCGCCTCCGGCGGCGGGGGAGAGGGGGAGACCACCGCCGTGGGGCTCAACGGCGTGCTGGGGAGCGCGATGCTCGTGTCCTCCGCGGTGCTCGGCGTCATCGGCGTCCGCCTCGGCGCGCGCGGGGTCGCCGTGGACAGGGTGGACTTCTACCGCGACGCGTCTTTCCTCCTCGCCGCCCTCGCCGCCGTGGCCGTCGTCCTCGCCGCCGGCGAGGTGACAATCTGGGGCGCCCTCGCCTTCACCTCCCTCTACGTCGTCTACGTCGTCGTCGTCGCCTTCACCCACGGCCGCGCCCCGAGCAAAGGCCACGGCGCGGAGGCGGACCACACGGCGGACGCCTTCTCCGAGCTCTGCAACGTCGCAGAGACGAAGTTCTACGGCGACCAAGAACCACTCCTCCCCGACACTGCACCGCTACTCAGGTACTACCCCGGCGACGGCGACGGCGACGGAGGCGGCGGCGGCTCCAAGAAGAAGATCAGGAGCGCGTTCTGGTCGGTGTTGCGCGCGCTGGAGCTCCCACTATGGCTTCCACGGCGGCTGACCATCCCGGACGCGAGCAAGGAGCGGTGGAGCAAGCCGGCGGCGGTGACCGCGGTCACCATGGCGCCCGTCCTCCTCTCCCACCTCTGCAGCCGCGCCACCGGCATCACCTCGCCCCTCGCCGTCCTCCTCGGCGTCCTCGCCGGCGCGTCCCTCGGCGCCGTCGCCTTCTTCACCACCTCCCCGGACGCGCCCCCAGCCGACCACCTCGCCGCCTGGCTCGCCGCCGGGTTCGTCATGAGCGTGGCCTGGGCGTACGCCGTGGCGACCGAGCTCCTCGCGCTGCTGGTCTCCGCGGCGCACGTCATGGGCGTCGACTCGGCGGCGCTGGGGCTCACCGTGCTCGCGTGGGGGAACTCCCTGGGCGACCTCGTCGCCAACCTCGCCGTGGCGTCGCGCGGCGGCGGCGGCGGGGGCGCGCAGGTGGCCGTGGCCGGGTGCTACGGCGGGCCGGTGTTCGACGTGCTCGTGGGCCTCGGCGTGTCGATGTTGCTGTCGTCGTGGGCCTCGCATCCGCGGCCCGTGGCAATGCCGGCGGAGGCCGGCCCATTCCAGACGCTGGGCTTCGCCGCCGCGGGGATTTGCTGGGCCGTGGTGGTGATGTCCAGGAGAGGGATGAGGGTGGACAGGACGCTGGGGTTTGGGCTCCTGGCCATTTACTTGTGCTTTCTTTGCATCAACATTTCTCAGGCACTTGGACCAGTATGA
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| Protein seq | MAKPSATSAAAAPPAARVLIGASVNVAFLLLLAFFFFISPRGGSPPEVVSSSKEVGIRGRRDGGGGGGGGVFRVESYGERCEHVGEEDGLDRLRFPRGYVDYLYLFDCVFGEERRVLGYAVMAAWLAVLFYLLGDTAAVYFCSSLEGLSRLLRLSPAIAGVTLLSLGNGAPDALSTIASFASGGGGEGETTAVGLNGVLGSAMLVSSAVLGVIGVRLGARGVAVDRVDFYRDASFLLAALAAVAVVLAAGEVTIWGALAFTSLYVVYVVVVAFTHGRAPSKGHGAEADHTADAFSELCNVAETKFYGDQEPLLPDTAPLLRYYPGDGDGDGGGGGSKKKIRSAFWSVLRALELPLWLPRRLTIPDASKERWSKPAAVTAVTMAPVLLSHLCSRATGITSPLAVLLGVLAGASLGAVAFFTTSPDAPPADHLAAWLAAGFVMSVAWAYAVATELLALLVSAAHVMGVDSAALGLTVLAWGNSLGDLVANLAVASRGGGGGGAQVAVAGCYGGPVFDVLVGLGVSMLLSSWASHPRPVAMPAEAGPFQTLGFAAAGICWAVVVMSRRGMRVDRTLGFGLLAIYLCFLCINISQALGPV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.072925 | 0.0 | 1.451081 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0436900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g30070 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0436900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0012010 | RBH | 0.099049 | 0.0 | 0.214602 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0012220 | RBH | 0.0 | 0.0 | 0.166341 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0011930 | RBH | 0.0 | 0.0 | 2.183232 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0012180 | RBH | 0.016876 | 0.022670 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0011920 | RBH | 1.099618 | 0.0 | 1.148441 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0260900 | RBH | 1.3549815 | 2.3221455 | 2.0528985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0011950 | RBH | 0.0 | 0.0 | 0.318592 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0280900 | RBH | 1.1378765 | 1.416399 | 2.049905 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0011700 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0011670 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0012090 | SBH | 2.802197 | 7.405504 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0011680 | RBH | 0.0 | 0.0 | 0.360296 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0012170 | RBH | 0.061653 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0012000 | RBH | 0.258428 | 3.124704 | 2.288130 |
