Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsN22_07G017970		OGI:07058990 \| 16/16			N22 \| OsN22RS2 \| Gramene(+IsoSeq)			Chr07:21102160-21106197		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		RLCK237, OsRLCK237
DNA seq		ATGTCCACGGCCACTACTGCCAGCCTCACCGGCGTCACCGCCGCCACCGCCGGCCTCGTCTTGCTGCTGCTCATGCTCCACGCGCCCCTCACCGACGCGCAGCCGATGCCGTGGCAGCTCTGCAACACCAGCAGCGGCAACTACACGGCGAACAGCACGTACCAAGCCAACATACGGTACCTGGCCACCTCACTCCCAGCATACGCCTCCTCCTCCCCGTCCCTCTTCGCCTCCGGCTCCTCGGGCGCGCCGCCCGACTCCATCTACGCCCTCGCGCTCTGCCGCGGCGACACCACCAACGCCTCCTCCTGCGCCGCCTGCGTCGCCGCGGCCATCCGGAGCGCGCAGCAGCTCTGCCCGCTCGCCAAGTCCGCCACCATCTACGACGACCCCTGCATCCTCCGATTCTCCAACGAGGCCTTCCCGATCAGCCCTCCCTACAACAGAGGGATCTACGTCGCTTGGAACTACGACAATGTCAGCGCCGCGGTGGCGCCGGCGTTCGCGGCCGCCGTCGCCCGGCTCGTCAACGCCACCGCCGACTACGCCGCGGCGGACTCCGTCAGGCGGTTCGGCACCGGGGAGGAGGCGTTCGACGCGACGTACCCCAGGATCTACTCGCTGGCGCAGTGCACGCCGGACATGACGGCGGCCGACTGCCGGAGCTGCCTCGGGGACATGATCGCGCAGATGACGCCCAAGTATTTCGTTGCGAGGCCGGGAGGGCGGGTTCTGGGCGTGCGCTGCAACTTCCGCTTCGAGACGTACCCTTTCTTCTTTGGCCAGCCGCTGTTGCAACTCCCGGGGCCGTCGCCTTCACCGGCGCCGCCGATGACCGGAGCCGGAGGTGATATATATTTCCAGCTTTTCTATCTGTTTTCTTTCTGAAATTCTATTTTCTTTCTGTAATTTATAAGGCTGTTCATGTTTGCAGAAAAATCGAAGAACAAGACAAGTGCAATTCTAGCCATTTCAATTCCTACAGTTGCTGTAGTATTAGCTATCGGTGTAGGGGTAGCATGGTTTTGCTCCTGGAGGTGGAGGAGCAGAAGACTAGCAGCAAAGACATTACGACCAAGTAAATCCTCTCACCCATTTTGTCAAATATATGTACTCACCGGAACTAATGAACCTGCGCTAGAAGTTGGATTATGACCAGAAGTTGTCTTCGTTTAGTCAAACTCCATTATCTCTTTCCTTACAAAAAAAGAACAATCGCTCTTAATATTGGAGGGAATTACATCTAGTTGCTTTGTCGGACCACTTTCTCGTAAATGTCATATAAGCTCTCTATGGTACTTTATGACTCATGAGCATCATCAAATTAATTCGGAGCGACCGAATATTTAGACAAGGCACCAAATAAATGATTTTACTGTAGTTATACACTTGAAAAATTACTGGGAGATATTATTTTTCTAGTGTAAATCAGATAATAATATTAAAAAATTGGTACATGTCAAGAACAATAAAAATCAAATTTGATACAAGTACCATAAAGTTTCTCAATCAAATTAGGTATCTCCTGATAGTCCCCTGGTAGTGAAAAACCCTTTTTCATGTACTACTTCATTAATTGCTTACTTACTCTCTGCCAATGAGGAGTTATACTCAAGGTAATCAGCATTAAGATACAAGGTAGAATCGTTTTCTGATTAATTTGTAGTCGATCATAGGATCAGGATACTACCAGATTTTAGAAAATACATATTTTTATATAAAATATATAATATGTTGTATAAATTAAACCATATAAATTGATTTTGATAAATTTAATTGATTTTTAATGTAAACGTAAGCATATTTATTTATATTATTTTCAATCCATCTTATGTTAAATAATATATTTTGTAGGATCTTAGAGATCGTAGAATCGGGATACTACCTAAGATTTTGTAGGTTAATGCGCAAATTAAAAGTAAGATTGGGATATTAGGATGCTAGGTAGGATCGGTATCGTTTCAGCTTGGTAGAATTGAAGTATCGTAAGATACTAGCTAGGATATAGATCGGGGTACTGATAACATTCGTTATACTCACATTTTAAGTACAAATATGCTCACCTCTTACATGTCATTACATGGTCATAAAATTTCTAAAAATATATCATACAGCATGACTTAACAAACATGCAACAATAAACACAATCTATACATCTCACAACCACAACAAAATACAAATTTGTTTATTTAGTTTTTCGTTGTGTAGATTAAATTTGGGCTTGAAATTTTACAAGATTGTAGAATCCTATTGTATAAAAATTGTTATTCCTTTTTAGTTTAACTTTTTTTTGCGGGGTCTTTTTTAATTTAACTAATTGGTTGATATTTTAGAAATCTTAAGCAAAAGAGTCTGCATGCATCAATTCATAACAATCCAACTTCCTCTTCCAACAGATTCTAGTCTAGATGACATGCAGAGTTTTGGTTCGCTCATTCTTGATCTATCAACACTACGAACTGCTACAGATGACTTCTCTGAACACAGAAGGCTTGGTGAAGGTGGCTTCGGTGTAGTTTACAAGGTACTATCCTGAACCATATTATATACAACTGTTAGGGTTTTCTCTCACCATAGATGAAGAGGCCATAACTTTTCTTCACCTGCGTGCAGGGAGACCTACCTGAAGGTCAAGAAATAGCGGTGAAGAGGCTCGCGCAGACTTCCAGACAAGGAATAGAAGAGCTGAAAACTGAACTACTTTTGGTTGCTAAGCTAAACCACAACAATCTTGTCAAGCTTATTGGCGTTTGCTTGGAAGAAAATGAGAAGATACTTGTATATGAATACATGCCCAATAGAAGCCTTGATACCATTCTCTTCGGTACTATTTCCACAGCTAGATAATTTCCAAAGAGAAAGAAATCTCATCATGATAATGCGAAAGACGCCCTAGTCATACTTACATGTTGTGATATAATTGGTGTTTTCTTGTTTGAATGGTTAGATGTGGAGAAAATCAAAGAGCTTGATTGGGAGCGGAGGTTCAAGATCATAAATGGAATAGCTAGAGGCTTGCAATATCTTCACGAAGATTCTCAACTGAAAATAGTTCATCGTGATCTTAAAGCAAGCAATGTTCTGTTGGATTCTGCTTATAATCCTAAGATTTCTGACTTCGGGCTAGCTAAGATATTCGGAAGGGATCAATCACAAGTTATCACACACCGTATCGCTGGAACTTAGTAAGTATGGCTAGTCTTTCAAAATGATGAAGTCAATAAATCATGCAGTAAAAGTTATGTTCTTGCTACAGTGGATATATGTCACCAGAGTATGCGATGCGTGGACAGTATTCGATCAAGTCAGACGTGTTTAGCTTCGGTGTCCTTGTTTTAGAGATCATCACAGGAAGAAGAAACTTTGGCTCCTACGGTTCTGACCATGATGTTGATCTCATATATGTTGTGAGTACATGGACCCAGGCCAGTTATTGTATAGTGAGCTAACCTCATCCAATTATAACTTCAATCGAACACTAACCCATTGATTTGATGCAGGCATGGGAGCACTGGACTAGCGATATAGCCATCGAATTGATCGACCCATCATTGGGAAACAACTATCCAATTGACAAGGTGCTGAAGTGCATCCACATTGGGCTACTCTGTGTTCAGCCGAAACCTGCTGATAGGCCATTGATGTCAGCTGTTAATGTCATGCTTAGTAGTACAGTCCGTCTCCCTTCCTTGTCCAGGCCTGCCTTTTGTTACCAGGAGATTGGTGCTAGCTCAGATGTAAATTCGGAGCAGAACCTGCTTGGTCCATACAACTCAACGAAAATGTATCAAGATGAAGCACCGGTCACAGAACTTGAGCCCAGATGAGTCTTGTAAGTTGAGAGTTGAAAGAATCTTCGCCTTCTTCTTCCTTACAGTTACAGGGAATTAGCTAGGAGTAATGAGTTTTGGGCTCATTAAAATCAAGTGGGAATTATTAGAGGTTAATAATTAATGTCTCCTGTTCTAATCCTGTTTAAATCAACGGAAATCATGTTTGTATTGTGGCACACCGCACATGTACATATACTGTAGCAAA More
CDS seq		ATGTCCACGGCCACTACTGCCAGCCTCACCGGCGTCACCGCCGCCACCGCCGGCCTCGTCTTGCTGCTGCTCATGCTCCACGCGCCCCTCACCGACGCGCAGCCGATGCCGTGGCAGCTCTGCAACACCAGCAGCGGCAACTACACGGCGAACAGCACGTACCAAGCCAACATACGGTACCTGGCCACCTCACTCCCAGCATACGCCTCCTCCTCCCCGTCCCTCTTCGCCTCCGGCTCCTCGGGCGCGCCGCCCGACTCCATCTACGCCCTCGCGCTCTGCCGCGGCGACACCACCAACGCCTCCTCCTGCGCCGCCTGCGTCGCCGCGGCCATCCGGAGCGCGCAGCAGCTCTGCCCGCTCGCCAAGTCCGCCACCATCTACGACGACCCCTGCATCCTCCGATTCTCCAACGAGGCCTTCCCGATCAGCCCTCCCTACAACAGAGGGATCTACGTCGCTTGGAACTACGACAATGTCAGCGCCGCGGTGGCGCCGGCGTTCGCGGCCGCCGTCGCCCGGCTCGTCAACGCCACCGCCGACTACGCCGCGGCGGACTCCGTCAGGCGGTTCGGCACCGGGGAGGAGGCGTTCGACGCGACGTACCCCAGGATCTACTCGCTGGCGCAGTGCACGCCGGACATGACGGCGGCCGACTGCCGGAGCTGCCTCGGGGACATGATCGCGCAGATGACGCCCAAGTATTTCGTTGCGAGGCCGGGAGGGCGGGTTCTGGGCGTGCGCTGCAACTTCCGCTTCGAGACGTACCCTTTCTTCTTTGGCCAGCCGCTGTTGCAACTCCCGGGGCCGTCGCCTTCACCGGCGCCGCCGATGACCGGAGCCGGAGAAAAATCGAAGAACAAGACAAGTGCAATTCTAGCCATTTCAATTCCTACAGTTGCTGTAGTATTAGCTATCGGTGTAGGGGTAGCATGGTTTTGCTCCTGGAGGTGGAGGAGCAGAAGACTAGCAGCAAAGACATTACGACCAAATTCTAGTCTAGATGACATGCAGAGTTTTGGTTCGCTCATTCTTGATCTATCAACACTACGAACTGCTACAGATGACTTCTCTGAACACAGAAGGCTTGGTGAAGGTGGCTTCGGTGTAGTTTACAAGGGAGACCTACCTGAAGGTCAAGAAATAGCGGTGAAGAGGCTCGCGCAGACTTCCAGACAAGGAATAGAAGAGCTGAAAACTGAACTACTTTTGGTTGCTAAGCTAAACCACAACAATCTTGTCAAGCTTATTGGCGTTTGCTTGGAAGAAAATGAGAAGATACTTGTATATGAATACATGCCCAATAGAAGCCTTGATACCATTCTCTTCGATGTGGAGAAAATCAAAGAGCTTGATTGGGAGCGGAGGTTCAAGATCATAAATGGAATAGCTAGAGGCTTGCAATATCTTCACGAAGATTCTCAACTGAAAATAGTTCATCGTGATCTTAAAGCAAGCAATGTTCTGTTGGATTCTGCTTATAATCCTAAGATTTCTGACTTCGGGCTAGCTAAGATATTCGGAAGGGATCAATCACAAGTTATCACACACCGTATCGCTGGAACTTATGGATATATGTCACCAGAGTATGCGATGCGTGGACAGTATTCGATCAAGTCAGACGTGTTTAGCTTCGGTGTCCTTGTTTTAGAGATCATCACAGGAAGAAGAAACTTTGGCTCCTACGGTTCTGACCATGATGTTGATCTCATATATGTTGCATGGGAGCACTGGACTAGCGATATAGCCATCGAATTGATCGACCCATCATTGGGAAACAACTATCCAATTGACAAGGTGCTGAAGTGCATCCACATTGGGCTACTCTGTGTTCAGCCGAAACCTGCTGATAGGCCATTGATGTCAGCTGTTAATGTCATGCTTAGTAGTACAGTCCGTCTCCCTTCCTTGTCCAGGCCTGCCTTTTGTTACCAGGAGATTGGTGCTAGCTCAGATGTAAATTCGGAGCAGAACCTGCTTGGTCCATACAACTCAACGAAAATGTATCAAGATGAAGCACCGGTCACAGAACTTGAGCCCAGATGA More
Protein seq		MSTATTASLTGVTAATAGLVLLLLMLHAPLTDAQPMPWQLCNTSSGNYTANSTYQANIRYLATSLPAYASSSPSLFASGSSGAPPDSIYALALCRGDTTNASSCAACVAAAIRSAQQLCPLAKSATIYDDPCILRFSNEAFPISPPYNRGIYVAWNYDNVSAAVAPAFAAAVARLVNATADYAAADSVRRFGTGEEAFDATYPRIYSLAQCTPDMTAADCRSCLGDMIAQMTPKYFVARPGGRVLGVRCNFRFETYPFFFGQPLLQLPGPSPSPAPPMTGAGEKSKNKTSAILAISIPTVAVVLAIGVGVAWFCSWRWRSRRLAAKTLRPNSSLDDMQSFGSLILDLSTLRTATDDFSEHRRLGEGGFGVVYKGDLPEGQEIAVKRLAQTSRQGIEELKTELLLVAKLNHNNLVKLIGVCLEENEKILVYEYMPNRSLDTILFDVEKIKELDWERRFKIINGIARGLQYLHEDSQLKIVHRDLKASNVLLDSAYNPKISDFGLAKIFGRDQSQVITHRIAGTYGYMSPEYAMRGQYSIKSDVFSFGVLVLEIITGRRNFGSYGSDHDVDLIYVAWEHWTSDIAIELIDPSLGNNYPIDKVLKCIHIGLLCVQPKPADRPLMSAVNVMLSSTVRLPSLSRPAFCYQEIGASSDVNSEQNLLGPYNSTKMYQDEAPVTELEPR
Function		Cysteine-rich receptor-like protein kinase 10 [UniProtKB/Swiss-Prot:Q0D5R2]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsN22_07G017970	OsN22_07G017970_01	Chr07	21102160	21106197	+	NAM
CDS seq	ATGTCCACGGCCACTACTGCCAGCCTCACCGGCGTCACCGCCGCCACCGCCGGCCTCGTCTTGCTGCTGCTCATGCTCCACGCGCCCCTCACCGACGCGCAGCCGATGCCGTGGCAGCTCTGCAACACCAGCAGCGGCAACTACACGGCGAACAGCACGTACCAAGCCAACATACGGTACCTGGCCACCTCACTCCCAGCATACGCCTCCTCCTCCCCGTCCCTCTTCGCCTCCGGCTCCTCGGGCGCGCCGCCCGACTCCATCTACGCCCTCGCGCTCTGCCGCGGCGACACCACCAACGCCTCCTCCTGCGCCGCCTGCGTCGCCGCGGCCATCCGGAGCGCGCAGCAGCTCTGCCCGCTCGCCAAGTCCGCCACCATCTACGACGACCCCTGCATCCTCCGATTCTCCAACGAGGCCTTCCCGATCAGCCCTCCCTACAACAGAGGGATCTACGTCGCTTGGAACTACGACAATGTCAGCGCCGCGGTGGCGCCGGCGTTCGCGGCCGCCGTCGCCCGGCTCGTCAACGCCACCGCCGACTACGCCGCGGCGGACTCCGTCAGGCGGTTCGGCACCGGGGAGGAGGCGTTCGACGCGACGTACCCCAGGATCTACTCGCTGGCGCAGTGCACGCCGGACATGACGGCGGCCGACTGCCGGAGCTGCCTCGGGGACATGATCGCGCAGATGACGCCCAAGTATTTCGTTGCGAGGCCGGGAGGGCGGGTTCTGGGCGTGCGCTGCAACTTCCGCTTCGAGACGTACCCTTTCTTCTTTGGCCAGCCGCTGTTGCAACTCCCGGGGCCGTCGCCTTCACCGGCGCCGCCGATGACCGGAGCCGGAGAAAAATCGAAGAACAAGACAAGTGCAATTCTAGCCATTTCAATTCCTACAGTTGCTGTAGTATTAGCTATCGGTGTAGGGGTAGCATGGTTTTGCTCCTGGAGGTGGAGGAGCAGAAGACTAGCAGCAAAGACATTACGACCAAATTCTAGTCTAGATGACATGCAGAGTTTTGGTTCGCTCATTCTTGATCTATCAACACTACGAACTGCTACAGATGACTTCTCTGAACACAGAAGGCTTGGTGAAGGTGGCTTCGGTGTAGTTTACAAGGGAGACCTACCTGAAGGTCAAGAAATAGCGGTGAAGAGGCTCGCGCAGACTTCCAGACAAGGAATAGAAGAGCTGAAAACTGAACTACTTTTGGTTGCTAAGCTAAACCACAACAATCTTGTCAAGCTTATTGGCGTTTGCTTGGAAGAAAATGAGAAGATACTTGTATATGAATACATGCCCAATAGAAGCCTTGATACCATTCTCTTCGATGTGGAGAAAATCAAAGAGCTTGATTGGGAGCGGAGGTTCAAGATCATAAATGGAATAGCTAGAGGCTTGCAATATCTTCACGAAGATTCTCAACTGAAAATAGTTCATCGTGATCTTAAAGCAAGCAATGTTCTGTTGGATTCTGCTTATAATCCTAAGATTTCTGACTTCGGGCTAGCTAAGATATTCGGAAGGGATCAATCACAAGTTATCACACACCGTATCGCTGGAACTTATGGATATATGTCACCAGAGTATGCGATGCGTGGACAGTATTCGATCAAGTCAGACGTGTTTAGCTTCGGTGTCCTTGTTTTAGAGATCATCACAGGAAGAAGAAACTTTGGCTCCTACGGTTCTGACCATGATGTTGATCTCATATATGTTGCATGGGAGCACTGGACTAGCGATATAGCCATCGAATTGATCGACCCATCATTGGGAAACAACTATCCAATTGACAAGGTGCTGAAGTGCATCCACATTGGGCTACTCTGTGTTCAGCCGAAACCTGCTGATAGGCCATTGATGTCAGCTGTTAATGTCATGCTTAGTAGTACAGTCCGTCTCCCTTCCTTGTCCAGGCCTGCCTTTTGTTACCAGGAGATTGGTGCTAGCTCAGATGTAAATTCGGAGCAGAACCTGCTTGGTCCATACAACTCAACGAAAATGTATCAAGATGAAGCACCGGTCACAGAACTTGAGCCCAGATGA More
Protein seq	MSTATTASLTGVTAATAGLVLLLLMLHAPLTDAQPMPWQLCNTSSGNYTANSTYQANIRYLATSLPAYASSSPSLFASGSSGAPPDSIYALALCRGDTTNASSCAACVAAAIRSAQQLCPLAKSATIYDDPCILRFSNEAFPISPPYNRGIYVAWNYDNVSAAVAPAFAAAVARLVNATADYAAADSVRRFGTGEEAFDATYPRIYSLAQCTPDMTAADCRSCLGDMIAQMTPKYFVARPGGRVLGVRCNFRFETYPFFFGQPLLQLPGPSPSPAPPMTGAGEKSKNKTSAILAISIPTVAVVLAIGVGVAWFCSWRWRSRRLAAKTLRPNSSLDDMQSFGSLILDLSTLRTATDDFSEHRRLGEGGFGVVYKGDLPEGQEIAVKRLAQTSRQGIEELKTELLLVAKLNHNNLVKLIGVCLEENEKILVYEYMPNRSLDTILFDVEKIKELDWERRFKIINGIARGLQYLHEDSQLKIVHRDLKASNVLLDSAYNPKISDFGLAKIFGRDQSQVITHRIAGTYGYMSPEYAMRGQYSIKSDVFSFGVLVLEIITGRRNFGSYGSDHDVDLIYVAWEHWTSDIAIELIDPSLGNNYPIDKVLKCIHIGLLCVQPKPADRPLMSAVNVMLSSTVRLPSLSRPAFCYQEIGASSDVNSEQNLLGPYNSTKMYQDEAPVTELEPR More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.065053	0.0	0.410212

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_07g0541700	SBH	0.282247	0.000000	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os07g35730	RBH	0.160450	0.000000	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os07g0541700	SBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_07g0018250	RBH	0.077226	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_07g0018180	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_07g0018160	SBH	0.072493	0.000000	0.400830
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_07g0018060	SBH	0.0	0.679471	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_07g0018180	RBH	0.0	0.0	0.000000
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_07G0350700	RBH	0.1953955	0.1675095	0.015802
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_07g0018670	RBH	0.0	0.0	0.031648
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_07G0358400	SBH	1.1841445	13.820534	1.580925
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_07g0017940	SBH	0.026354	0.135489	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_07g0018100	RBH	0.080503	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_07g0017950	RBH	0.000000	2.410537	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_07g0018260	RBH	0.305676	0.0	0.250125
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_07g0018060	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_07G017960	RBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_07g0018040	RBH	0.0	0.0	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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