Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsN22_07G006170 OGI:07014740 | 16/16 N22 | OsN22RS2 | Gramene(+IsoSeq) Chr07:5277773-5282698
Gene Symbol SNRK1B, SnRK1B, OsSnRK1B, OsSnRK1.3, SnRK1.3, OsSnRK1A2
DNA seq

ATACTAATTACTACTACTACTTGACACACACACACACGCTCAGTGAGGCGATCGAGGATGCAGGGCGGCGGCGCCGCGGCGTCGGCGGCGGCGGCGGCGACGCAGCAGCACCGGGAGCTGCTCGAGCGGTACGAGCTGGTGCGGGTGCGGGGGCGCGGTAGCTTCGCGCAGGTGTGGGAGGCTCGCCACCGCCGCACCGGCCTCAGCGTCGCCGTCAAGATCCTCAACCTCGCCGGACTTCTCGCCAGCGGCATCCCCATCCGCAAAGGCAAGCAGCCACCGCCTTCGTCTTCTTCTTCTTCTTCCTCTCCGATCGTCGAGCTCGAGCGATCCGTCTCTCATCTTGAATTCTTGATTTTCTTTCTCTCCTGAATTTTCGATCGGCGGCGGCGGCGGCAGTGGAGAGGGAGATCGCGGTGATGAGGCTGCTGAACCACCCGCACATCGTGCGGTTCCACGAGGCGATCGCCGGCGGCGACGGCGGCGGCCACGTGTACATCGTGATGGAGCTCGCGACGCAGGGGCAGCTCTACGATTACGTCACCCAGCTCGGCCGCCTCCGCGAGGATGACGCTCGCAGGATCTTCCAGCAGGTTGAAAACCCTGCTTTCTTCAGCTCTTCACAAGTTCAGAGTTAACAAAAAAGAAGAAGAACTCTGCATTTTTGCACCGATTTATTGCTCCCCATTTTGAACTGAAATTTCGACAATGATTTGTGTTAGTCTACGAGATTTTTTATGGTTTGATGAACGCCGATTTCCATGTTCCAAACTTTGAAAAATTTTACTCTGAAAAAGAGGAGAAAGAAAGTCAGACGACATAAACATTTTAATGAAATGTTGTTAATTTGATGATGCAACAACGAATGCATTTTTTTTAATTGGTCAATTCGATGGAGGCAGATTATATCAGGCGCCGAATACTGCCACCACAACATGGTCGTCCACCGTGACCTGAAACTGGAGAACATCCTGATGGATTCAGAGATGAACGTCAAGATCGTCGACTTCGGTTTCAGCAAGTTCTTCAGGCACAACAAGGTGCTCAGCGCGTCATGCGGAAGCCGAGAATATGCCGCTCCCGAGGTCAGCTACAAATTCACAAATATTCTTTTTCTCATATGAAATATTCCTAACCGTTCCAAAATACATAGACGGAAATGCTTATATTTTGGAACGGACCGGAGAGAATACATAGTTCAATGTCAATACGCCTAGTAATTAGAAGAAATTTAAGTGTTAAAAAAAGGAGTTACATGTCGTCGTCGATCATATAGTAACTTGGGGAATGTATTGAAATTCATATGTTAGATGTTTATGTTGCTTATTGTAATTTGTATTGTAGCTACTCGCGGGTAGAAAATATGTTGGTCCACCTGTGGATGTTTGGAGCTGTGGAGTAATCCTTTACATCCTCTTCTGTGGACGCTTGCCCTTTGACAGCGCCGATGTATCAGAGCTGCACAGGATCATCAAGGTAGGAAATTACTCTTCGAATTCTAATCACAATAGTTACAATATCTAATTAACCGTGTTAATATTAACAAAAAGAATGACTTTGATATAAACATAAACAACGTATATGAAGTTATCTGAATTAGAAGTTCCTGAGTTCAAATCTTGTAGTATATAGCTTAGTAGTTACAGTGATCTGAGTAGTACCCCAAGATCCTGAGTTCAAATCTTCTATGGAGCGAATTTTAGATTGGGTTGTTTCCGGGGCTAAGTTCCCTATTTCAATGGCCGTATATATCCGGTTGGATGTAGAGGCCGGGTAAAAAAATACCCTTATCTAAAAAAAAATCTGAATTAGGAGTTCAACATCATGGATACTAAAATGTCAATTGTAAAACAGCTGACAATAAATTATTCGACCGAATGACTGTAGACCGGCCAACAAATACGGTATAATAAGAAGTTATAAACTGTGAATTGTAAAACATCTGAAAAAAATATATTATTCAGCTGAATTACTCTAGACCAGCAAATAAAAGAAGGTATAAAATTCCAACTGTAAAACATATGACAAAAAAAATATATTATTCAGCTGCTGAACAACTGTAGACAAGCAAATGGAAGAAGAAGTTATCAGTGGTCAAAACTGAAAATCCCAATGAGATTGAGAAACAGCTGATCTGTTTTTTTCTTCTTCCTCTCTTCGTATTGCATTGCAGAGAGGAGAGTTCAGTATCCCACCGTACGTGCCTGACGACGCGAGGGATCTCATCTCCAGCATGCTGATCGTGAGACCTGACAAGCGCCTCACCATCACCGAGGTCAGGACGCACCGTTGGCTGCAGCACTCCATCCCTCGCTACCTCGCAATGCCTCCTCTCAACGCTCGCACACAGATCACCAGGGCAAGTGTTGCTTAATTAATTACTTTTGATTAATTATGTGCTATTTGGGTGCTTAATTTTAATTGATTACGCATTTTTTTTGATTAATTGTGTTTATATCTTGTGCTAGATTGATGCTGAGACTGTCGACAAGGTAGTCGGCCATGGCTTTGAAAGGAGGTACTTGGTTGAATCACTTGAAAACAGAGTCGAAAACGAGGTATGTAATGTACTACCTCATTTTTAAAATATATGACGCCATTAACTTTTCGCATAACGTTTGACCATTTGTTTTATTCACAAATTTAGTATGCATATATAAAATTATATGTTATGATTGTATTTTATTTGATAATAAAACAAATCATAACAAAAATAAATGAATAAGATGAATGGTCAAACTTTGTGAAAAGTCAACGTCGTCATACATTTTGAAAGTAACAACTATAAGAGTATTGGTACATAGAAAGGTTAATGACATGCCACTCATGACATGTTGGCAACATATACATACAGATGGATCGATGCAATTGCAATTCACTTGTGGTTCAAAATATGCATGTATGGATTTGTTTGTAGGCGACGGTCGCCTACAACCTGATCCTCAATAAGAAGTTCGATGCCCCAACACGTTATGTTTGGACAATTGACGTCTATCAAGAAGCTGGACAAAGTAACACCACGGTACGTATAGAAACTAACTAGTTCTGCAGAAAATAAATCTTCATTCATGGCAATACTAAAATTCCCATGTCCAAGGACAAATATCTTGGATATGTGCAATTGGACATGGACTTCAAAGTTCAAACATATGACTCTGGTGGATTGTTTTCTTTTGAGTATGACAGTAAAAGTTTTCCATAAAATTCTTATTTGAGCACATAAAAGTATATTCACGATGTTCAATTTTACCAATCTAGAATTAATGTTGAATAATTTCTAATTCAGTACTCCATCCATCTAGACTGATAATACCTATCGTTTTGAAAAGTATACGGTCTTAAAAAAAACAACATTGACCACTATTTTCTATTAAAATATGTATAGAAATATTAATAAATATATGATTTTGTTGGAGCACTTTTAAGACCAATCTATATATATGGTCACCACATTTCTAAGACAAACATTTTAGATGTTATTTATAATTAAAAGTTTTTAAAGTTTGACAATACTCTTATCCAAAACAATAAGTATAAGTATAATCAACCTGGAATAAGTATAATCAATCTGGAGTAATGTTTATAGACAAAAATGTTTTATTTGCACAATAATGATCAAGAAATTTCTTTGTACTAAACAAAGTGGATTTTCCTTTTTTTAAAAAAATCTAACACTGTATTGGATCAACTGATTCAACTCCATCATACACCTATTTGCTCTGGACAGGGAGCAGCAGAAGCAACTGGCAGCAGTGCTGCCGGAGAGCCGCCGGTCGCCGTCGCCGGAGAAGACGACGGACGCAACAACGGATGGGCGCTGGGAGGGGTGGAGTTCCACGAGTGCCCCCGCGAGGCGATGCGCGCCATCGCGGCGGCGCTGCGCGAGACCGGCGTCGTCTACGCGCACGACGACGACGACCGCGGCCGCTACGGCAAGCTGCTCTGCGCACGCTTCGCCGGCGCCGCCGGCGTCCGCCGCATCATCCGCAGCTACCTCGCCGCCACCGACGACGCGCCCTCCTCTTCCTCCTCCGCCGCCTCCGCCGGTGGTGGCAGCGGCAGAGGTGAGGCTGGCCATGGCGGTGGAGTTCCCGTCGATGATGCTGTCCTCGAGAGCTTGTCTGCGGCTGTGTTCTTTGAAATTCAGGTATTCTCCTCAAGCGCATCATTCATACACTCTCGTAACCTATATTTTCGCTTATATTTATATTTATCAGTTAAAGTTTAAATATTTAACTTTAAATTTAGAGGTGATTATAAAGTTTTTCATTGTAGTTTATTTTTTAGTCTTTTCATTTATATCGTTAAGAACATGTATATAAAAACTTTATTAAAAAATATTTTTTATTTTTAAATATGTCATTTGGCTTTCCTCGAATAAGCCAAACAATGAGACTGATAGTGTTTCTCCCTTGACAATTATTACTCCCTCCAAATCTTAATACTTGCAAAAAAAAACATGTGTTTAACCATTCCTTTAATTTTTTTTTACCCATGATAAAAATTTTACCTCTTGTGCTTATTGTAGCTGTACAAGTCAGAAGGGGAAGGGAATTACCTGATGGATCTGAAGAGGCTTTCTGGCCCACAGCTTCAATACCTCAACATATGCTCAGAGTTAAGCTCCAAGTTGAGAGCAATTAACTGAGGCGGTAGAAATTAACAGTCTCCTCCAAGGAAGAAATAATCTGAGGAAATATTAGGTTATCCCTCTTTTCCTTTTGTTTTTAGTGAAAGGAAAAGCTAGCATGTATGAGAGGGAAAAATTAAAGAAAAATACATATAACACTATGAGATGAACTTATACAAATATATACTAATTAAATCCGTCAGGATTTATCAATTTAGATTGTCTCCTTTTATCTATGCCTACTATGTTAAATAATCGAAACCCGCTTTATGAAATGTTAAAATATCAAACATCTC

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CDS seq

ATGCAGGGCGGCGGCGCCGCGGCGTCGGCGGCGGCGGCGGCGACGCAGCAGCACCGGGAGCTGCTCGAGCGGTACGAGCTGGTGCGGGTGCGGGGGCGCGGTAGCTTCGCGCAGGTGTGGGAGGCTCGCCACCGCCGCACCGGCCTCAGCGTCGCCGTCAAGATCCTCAACCTCGCCGGACTTCTCGCCAGCGGCATCCCCATCCGCAAAGTGGAGAGGGAGATCGCGGTGATGAGGCTGCTGAACCACCCGCACATCGTGCGGTTCCACGAGGCGATCGCCGGCGGCGACGGCGGCGGCCACGTGTACATCGTGATGGAGCTCGCGACGCAGGGGCAGCTCTACGATTACGTCACCCAGCTCGGCCGCCTCCGCGAGGATGACGCTCGCAGGATCTTCCAGCAGATTATATCAGGCGCCGAATACTGCCACCACAACATGGTCGTCCACCGTGACCTGAAACTGGAGAACATCCTGATGGATTCAGAGATGAACGTCAAGATCGTCGACTTCGGTTTCAGCAAGTTCTTCAGGCACAACAAGGTGCTCAGCGCGTCATGCGGAAGCCGAGAATATGCCGCTCCCGAGCTACTCGCGGGTAGAAAATATGTTGGTCCACCTGTGGATGTTTGGAGCTGTGGAGTAATCCTTTACATCCTCTTCTGTGGACGCTTGCCCTTTGACAGCGCCGATGTATCAGAGCTGCACAGGATCATCAAGAGAGGAGAGTTCAGTATCCCACCGTACGTGCCTGACGACGCGAGGGATCTCATCTCCAGCATGCTGATCGTGAGACCTGACAAGCGCCTCACCATCACCGAGATTGATGCTGAGACTGTCGACAAGGCGACGGTCGCCTACAACCTGATCCTCAATAAGAAGTTCGATGCCCCAACACGTTATGTTTGGACAATTGACGTCTATCAAGAAGCTGGACAAAGTAACACCACGGGAGCAGCAGAAGCAACTGGCAGCAGTGCTGCCGGAGAGCCGCCGGTCGCCGTCGCCGGAGAAGACGACGGACGCAACAACGGATGGGCGCTGGGAGGGGTGGAGTTCCACGAGTGCCCCCGCGAGGCGATGCGCGCCATCGCGGCGGCGCTGCGCGAGACCGGCGTCGTCTACGCGCACGACGACGACGACCGCGGCCGCTACGGCAAGCTGCTCTGCGCACGCTTCGCCGGCGCCGCCGGCGTCCGCCGCATCATCCGCAGCTACCTCGCCGCCACCGACGACGCGCCCTCCTCTTCCTCCTCCGCCGCCTCCGCCGGTGGTGGCAGCGGCAGAGGTGAGGCTGGCCATGGCGGTGGAGTTCCCGTCGATGATGCTGTCCTCGAGAGCTTGTCTGCGGCTCTGTACAAGTCAGAAGGGGAAGGGAATTACCTGATGGATCTGAAGAGGCTTTCTGGCCCACAGCTTCAATACCTCAACATATGCTCAGAGTTAAGCTCCAAGTTGAGAGCAATTAACTGA

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Protein seq

MQGGGAAASAAAAATQQHRELLERYELVRVRGRGSFAQVWEARHRRTGLSVAVKILNLAGLLASGIPIRKVEREIAVMRLLNHPHIVRFHEAIAGGDGGGHVYIVMELATQGQLYDYVTQLGRLREDDARRIFQQIISGAEYCHHNMVVHRDLKLENILMDSEMNVKIVDFGFSKFFRHNKVLSASCGSREYAAPELLAGRKYVGPPVDVWSCGVILYILFCGRLPFDSADVSELHRIIKRGEFSIPPYVPDDARDLISSMLIVRPDKRLTITEIDAETVDKATVAYNLILNKKFDAPTRYVWTIDVYQEAGQSNTTGAAEATGSSAAGEPPVAVAGEDDGRNNGWALGGVEFHECPREAMRAIAAALRETGVVYAHDDDDRGRYGKLLCARFAGAAGVRRIIRSYLAATDDAPSSSSSAASAGGGSGRGEAGHGGGVPVDDAVLESLSAALYKSEGEGNYLMDLKRLSGPQLQYLNICSELSSKLRAIN

Function Serine/threonine protein kinase OSK4 [UniProtKB/Swiss-Prot:Q852Q1]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsN22_07G006170 OsN22_07G006170_01 Chr07 5277806 5282420 + NAM
CDS seq

ATGCAGGGCGGCGGCGCCGCGGCGTCGGCGGCGGCGGCGGCGACGCAGCAGCACCGGGAGCTGCTCGAGCGGTACGAGCTGGTGCGGGTGCGGGGGCGCGGTAGCTTCGCGCAGGTGTGGGAGGCTCGCCACCGCCGCACCGGCCTCAGCGTCGCCGTCAAGATCCTCAACCTCGCCGGACTTCTCGCCAGCGGCATCCCCATCCGCAAAGTGGAGAGGGAGATCGCGGTGATGAGGCTGCTGAACCACCCGCACATCGTGCGGTTCCACGAGGCGATCGCCGGCGGCGACGGCGGCGGCCACGTGTACATCGTGATGGAGCTCGCGACGCAGGGGCAGCTCTACGATTACGTCACCCAGCTCGGCCGCCTCCGCGAGGATGACGCTCGCAGGATCTTCCAGCAGATTATATCAGGCGCCGAATACTGCCACCACAACATGGTCGTCCACCGTGACCTGAAACTGGAGAACATCCTGATGGATTCAGAGATGAACGTCAAGATCGTCGACTTCGGTTTCAGCAAGTTCTTCAGGCACAACAAGGTGCTCAGCGCGTCATGCGGAAGCCGAGAATATGCCGCTCCCGAGCTACTCGCGGGTAGAAAATATGTTGGTCCACCTGTGGATGTTTGGAGCTGTGGAGTAATCCTTTACATCCTCTTCTGTGGACGCTTGCCCTTTGACAGCGCCGATGTATCAGAGCTGCACAGGATCATCAAGAGAGGAGAGTTCAGTATCCCACCGTACGTGCCTGACGACGCGAGGGATCTCATCTCCAGCATGCTGATCGTGAGACCTGACAAGCGCCTCACCATCACCGAGATTGATGCTGAGACTGTCGACAAGGCGACGGTCGCCTACAACCTGATCCTCAATAAGAAGTTCGATGCCCCAACACGTTATGTTTGGACAATTGACGTCTATCAAGAAGCTGGACAAAGTAACACCACGGGAGCAGCAGAAGCAACTGGCAGCAGTGCTGCCGGAGAGCCGCCGGTCGCCGTCGCCGGAGAAGACGACGGACGCAACAACGGATGGGCGCTGGGAGGGGTGGAGTTCCACGAGTGCCCCCGCGAGGCGATGCGCGCCATCGCGGCGGCGCTGCGCGAGACCGGCGTCGTCTACGCGCACGACGACGACGACCGCGGCCGCTACGGCAAGCTGCTCTGCGCACGCTTCGCCGGCGCCGCCGGCGTCCGCCGCATCATCCGCAGCTACCTCGCCGCCACCGACGACGCGCCCTCCTCTTCCTCCTCCGCCGCCTCCGCCGGTGGTGGCAGCGGCAGAGGTGAGGCTGGCCATGGCGGTGGAGTTCCCGTCGATGATGCTGTCCTCGAGAGCTTGTCTGCGGCTCTGTACAAGTCAGAAGGGGAAGGGAATTACCTGATGGATCTGAAGAGGCTTTCTGGCCCACAGCTTCAATACCTCAACATATGCTCAGAGTTAAGCTCCAAGTTGAGAGCAATTAACTGA

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Protein seq

MQGGGAAASAAAAATQQHRELLERYELVRVRGRGSFAQVWEARHRRTGLSVAVKILNLAGLLASGIPIRKVEREIAVMRLLNHPHIVRFHEAIAGGDGGGHVYIVMELATQGQLYDYVTQLGRLREDDARRIFQQIISGAEYCHHNMVVHRDLKLENILMDSEMNVKIVDFGFSKFFRHNKVLSASCGSREYAAPELLAGRKYVGPPVDVWSCGVILYILFCGRLPFDSADVSELHRIIKRGEFSIPPYVPDDARDLISSMLIVRPDKRLTITEIDAETVDKATVAYNLILNKKFDAPTRYVWTIDVYQEAGQSNTTGAAEATGSSAAGEPPVAVAGEDDGRNNGWALGGVEFHECPREAMRAIAAALRETGVVYAHDDDDRGRYGKLLCARFAGAAGVRRIIRSYLAATDDAPSSSSSAASAGGGSGRGEAGHGGGVPVDDAVLESLSAALYKSEGEGNYLMDLKRLSGPQLQYLNICSELSSKLRAIN

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Gene Transcript Chromosome Start End Strand Source
OsN22_07G006170 OsN22_07G006170_02 Chr07 5277773 5282698 + IsoSeq
CDS seq

ATGCCCCAACACGTTATGTTTGGACAATTGACGTCTATCAAGAAGCTGGACAAAGTAACACCACGGGAGCAGCAGAAGCAACTGGCAGCAGTGCTGCCGGAGAGCCGCCGGTCGCCGTCGCCGGAGAAGACGACGGACGCAACAACGGATGGGCGCTGGGAGGGGTGGAGTTCCACGAGTGCCCCCGCGAGGCGATGCGCGCCATCGCGGCGGCGCTGCGCGAGACCGGCGTCGTCTACGCGCACGACGACGACGACCGCGGCCGCTACGGCAAGCTGCTCTGCGCACGCTTCGCCGGCGCCGCCGGCGTCCGCCGCATCATCCGCAGCTACCTCGCCGCCACCGACGACGCGCCCTCCTCTTCCTCCTCCGCCGCCTCCGCCGGTGGTGGCAGCGGCAGAGGTGAGGCTGGCCATGGCGGTGGAGTTCCCGTCGATGATGCTGTCCTCGAGAGCTTGTCTGCGGCTGTGTTCTTTGAAATTCAGCTGTACAAGTCAGAAGGGGAAGGGAATT

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Protein seq

MPQHVMFGQLTSIKKLDKVTPREQQKQLAAVLPESRRSPSPEKTTDATTDGRWEGWSSTSAPARRCAPSRRRCARPASSTRTTTTTAAATASCSAHASPAPPASAASSAATSPPPTTRPPLPPPPPPPVVAAAEVRLAMAVEFPSMMLSSRACLRLCSLKFSCTSQKGKGI

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A5 Chr07 5280047 5280241 + OsN22_07G006170_02 OsN22_07G006170_02,OsN22_07G006170_01 All
A5 Chr07 5280264 5280690 + OsN22_07G006170_02 OsN22_07G006170_02,OsN22_07G006170_01 All
A5 Chr07 5281901 5282301 + OsN22_07G006170_02 OsN22_07G006170_02,OsN22_07G006170_01 All

Expression

Leaf Root Panicle
FPKM 0.0 0.450115 0.626734

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_07g0194100 RBH 0.258217 0.000000 1.532851
Nipponbare | IRGSP 1.0 | MSU LOC_Os07g09610 RBH 0.176769 0.000000 0.399444
Nipponbare | IRGSP 1.0 | RAP-db Os07g0194100 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_07g0006080 RBH 0.0 0.0 0.666161
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_07g0006040 RBH 0.0 0.000000 0.538213
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_07g0005950 RBH 0.0 1.762884 2.164663
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_07g0005870 RBH 0.0 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_07g0006050 RBH 0.553294 0.000000 7.071759
Minghui 63 | MH63RS3 | HZAU OsMH63_07G0085600 RBH 0.1526085 1.541802 0.54747
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_07g0006540 RBH 0.0 0.0 0.625214
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_07G0087500 RBH 0.2481405 1.5696585 0.738874
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_07g0005970 RBH 0.0 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_07g0005970 RBH 0.0 3.939554 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_07g0006020 RBH 0.0 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_07g0006150 RBH 0.0 0.130483 0.737665
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_07g0005980 RBH 0.0 0.410325 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G030010 RBH 0.071656 0.000000 0.279384
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_07g0005960 RBH 0.0 0.0 1.621504
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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