Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0006150 | OGI:07014740 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:4967564-4972351 | ||||||||
| Gene Symbol | SNRK1B, SnRK1B, OsSnRK1B, OsSnRK1.3, SnRK1.3, OsSnRK1A2 | ||||||||||
| DNA seq | acacgctcagtgaggcgatcgaggatgcagggcggcggcggcgcggcgtcggcggcggcggcggcggcggcggcggcgacgcagcagcaccgggagctgctcgagcggtacgagctggtgcgggtgcgggggcgcggtagcttcgcgcaggtgtgggaggctcgccaccgccgcaccggcctcagcgtcgccgtcaagatcctcaacctcgccggacttctcgccagcggcatccccatccgcaaaggcaagcagccaccgccttcgtcttcttcttcttcttcctctccgatcgtcgagctcgagcgatccgtctctcatcttgaattcttgattttctttctctcctgaattttcgatcggcggcggcggcggcagtggagagggagatcgcggtgatgaggctgctgaaccacccgcacatcgtgcggttccacgaggcgatcgccggcggcgacggcggcggccacgtgtacatcgtgatggagctcgcgacgcaggggcagctctacgattacgtcacccagctcggccgcctccgcgaggatgacgctcgcaggatcttccagcaggttgaaaaccctgctttcttcagctcttcacaagttcagagttaacaaaaaagaagaagaactctgcatttttgcaccgatttattgctccccattttgaactgaaatttcgacaatgatttgtgttagtctacgagatttttttatggtttgatgaacgccgatttccatgttccaaactttgaaaaattttactctgagaaagaggagaaagaaagtcagacgacataaacattttaatgaaatgttgttaatttgatgatgcaacaacgaatgcattttttttaattggtcaattcgatggaggcagattatatcaggcgccgaatactgccaccacaacatggtcgtccaccgtgacctgaaactggagaacatcctgatggattcagagatgaacgtcaagatcgtcgacttcggtttcagcaagttcttcaggcacaacaaggtgctcagcgcgtcatgcggaagccgagaatatgccgctcccgaggtcagccacaaattcacaaatattctttttctcatatgaaatattcctaaccattccaaaatacatagacggaaatgcttatattttggaacggaccggagagaatacatagttcaatgtcaatacgcctagtaattagaagaaatttaagtgttaaaaaaaaggagttacatgtcgtcgtcgatcatatagtaacttggggaatgtattgaaattcatatgtgagatgtttatgttgcttattgtaatttgtattgtagctactcgcgggtagaaaatatgttggtccacctgtggatgtttggagctgtggagtaatcctttacatcctcttctgtggacgcttgccctttgacagcgccgatgtatcagagctgcacaggatcatcaaggtaggaaattactcttcgaattctaatcacaatagttacaatatctaattaaccgtgttaatattaacaaaaagaatgactttgatataaacataaacaacgtatatgaagttatctgaattagaagttcctgagttcaaatcttgtagtatatagcctagtagttacagtgacctgagtagtacccCaaggtcctgagttcaaatcttctatggagcgaatttcagattgggttgttttcggggctaagttccctatttcaatggccgtatatatccggttggatatagaggcCgggtaaaaaaatacccttatctaaaaaaaaatctgaattagaagttcaacatcatggatactaaaatgtcaattgtaaaacagctgacaataaattattcgaccgaatgactgtagaccggccaacaaatacggtataataagaagttataaactgtgaattgtaaaacatctgaaaaaaAtatattattcagctgaattactctagaccagcaaataaaagaaggtataaaattccaactgtaaaacatatgacaaaaaaatatattattcagctgctgaacaactgtagacaagcaaatggaagaagaagttatcagtggtcaaaactgaaaatcccaatgagattgagaaacagctgatctgtttttttcttcttcctctcttcgtattgcgttgcagagaggagagttcagtatcccaccgtacgtgcctgacgacgcgagggatctcatctccagcatgctgatcgtgagacctgacaagcgcctcaccatcaccgaggtcaggacgcaccgttggctgcagcactccatccctcgctacctcgcaatgcctcctctcaacgctcgcacacagatcaccagggcaagtgttgcttaattaattacttttgattaattatgtgctattTgggtgcttaattttaattgattacgcatttttttgattaattgtgtttatatcttgtgctagattgatgctgagactgtcgacaaggtagtcggccatggctttgaaaggaggtacttggttgaatcacttgagaacagagtcgaaaacgaggtatgtaatgtactacctcatttttaaaatatatgacgccattaacttttcgcataacgtttaaccattcgttttattcacaaatttagtatgcatatataaaattatatgttatgattgtattttatttgataataaaAcaaatcataacaaaaataaatgaataagatgaatggtcaaactttgtgaaaagtcaacgtcatcatacattttgaaagtaacaactataagagtattggtacatagaaaggttaatgacatgccactcatgacatgttggcaacatatacatacagatggatcgatgcaattgcaattcacttgtggttcaaaAtatgcatgtatggatttgtttgtaggcgacggtcgcctacaacctgatcctcaataagaagttcgatgccccaacacgttatgtttggacaattgacgtctatcaagaagctggacaaagtaacaccacggtacgtatagaaactaactagttctgcagaaaataaatcttcattcatggcaatactaaaattcccatgtccaaggacaaatatcttggatatgtgcaattggacatgcacttcaaagttcaaacatatgactctggtggattgttttcttttgagtatgacagtaaaagttttccataaaattcttatttgagcacataaaagtatattcacgatgttcaattttaccaatctagaattaatgttgaataattTctaattcagtactccatccatctagactgataatacctatcgttttaaaaagtatacggtcttcaaaaaaaacaacattgaccactattttctattaaaAtatgtatagataaatatATgattttgtTggagcacttttaagaccaatctatatatatggtcaccacatttctaagacaaacattttagatgttatttataattaaaagtttttaaagtttgacaatactcttatccaaaacaataagtataatcaAcctggagtaatgtttatagacaaaaatgttttatttgcacaataatgatcaagaaatttctttgtactaaacaaagtggattttccttttttttaaaaaatctaacactgtattggatcaactgattcaacAccatcatacacctatttgctctggacagggagcagcagaagcaactggcagcagtgctgccggagagccgccggtcgccgtcgccggagaagacgacggacgcaacaacggatgggcgctgggaggggtggagttccacgagtgcccccgcgaggcgatgcgcgccatcgcggcggcgctgcgcgagaccggcgtcgtctacgcgcacgacgacgacgaccgcggccgctacggcaagctgctctgcgcacgcttcgccggcgccgccggcgtccgccgcatcatccgcagctacctcgccgccaccgacgacgcGCcctcctcttcctcctccgccggtggtggcagtggcagaggtgaggctggccatggcggtggagctcccgtcgatgatgctgtcctcgagagcttgtctgcggctgtgttctttgaaattcaggtattctcctcaagcgcatcattcatacactctcgtaacctcatctttTcgcttatatttatatttatcagttaaagtttaaAtatttaactttaaatttagaggtgattttaaagtttttcatcgtagtttattttttagtcttttcatttatatcgttaagaacatgtatataagaactttattaaaaaAAtatttttcatttttaaatatatcatttggcttgttcctcgaataagccaaacaatgagactgatagtgtttctccccttgacaattattactccctccaaatcttaatacttgcaaaaaaaaaAcatgtgtttaaccgttcctttaatttttttttacccatgataaaaattttacctcttgtgcttattgtagctgtacaagtcagaaggggaagggaattacctgatggatctgaagaggctttctggcccacagcttcaatacctcaacatatgctcagagttaagctccaagttgagagcaattaactgaggcggtagaaattaacagtctcctccaaggaagaaataAtctgaggaaatattaggttatccctcttttccttttgtttttagtgaaaggaaaagctagcatgtatgagagggaaaaattaaagaaaaatacatataacactatgagatgaacttatacaaatatatactaattaaatccgtcaggatttatcaatt
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| CDS seq | atgcagggcggcggcggcgcggcgtcggcggcggcggcggcggcggcggcggcgacgcagcagcaccgggagctgctcgagcggtacgagctggtgcgggtgcgggggcgcggtagcttcgcgcaggtgtgggaggctcgccaccgccgcaccggcctcagcgtcgccgtcaagatcctcaacctcgccggacttctcgccagcggcatccccatccgcaaagtggagagggagatcgcggtgatgaggctgctgaaccacccgcacatcgtgcggttccacgaggcgatcgccggcggcgacggcggcggccacgtgtacatcgtgatggagctcgcgacgcaggggcagctctacgattacgtcacccagctcggccgcctccgcgaggatgacgctcgcaggatcttccagcagattatatcaggcgccgaatactgccaccacaacatggtcgtccaccgtgacctgaaactggagaacatcctgatggattcagagatgaacgtcaagatcgtcgacttcggtttcagcaagttcttcaggcacaacaagctactcgcgggtagaaaatatgttggtccacctgtggatgtttggagctgtggagtaatcctttacatcctcttctgtggacgcttgccctttgacagcgccgatgtatcagagctgcacaggatcatcaagagaggagagttcagtatcccaccgtacgtgcctgacgacgcgagggatctcatctccagcatgctgatcgtgagacctgacaagcgcctcaccatcaccgaggtcaggacgcaccgttggctgcagcactccatccctcgctacctcgcaatgcctcctctcaacgctcgcacacagatcaccagggcaagtattgatgctgagactgtcgacaaggcgacggtcgcctacaacctgatcctcaataagaagttcgatgccccaacacgttatgtttggacaattgacgtctatcaagaagctggacaaagtaacaccacgggagcagcagaagcaactggcagcagtgctgccggagagccgccggtcgccgtcgccggagaagacgacggacgcaacaacggatgggcgctgggaggggtggagttccacgagtgcccccgcgaggcgatgcgcgccatcgcggcggcgctgcgcgagaccggcgtcgtctacgcgcacgacgacgacgaccgcggccgctacggcaagctgctctgcgcacgcttcgccggcgccgccggcgtccgccgcatcatccgcagctacctcgccgccaccgacgacgcGCcctcctcttcctcctccgccggtggtggcagtggcagaggtgaggctggccatggcggtggagctcccgtcgatgatgctctgtacaagtcagaaggggaagggaattacctgatggatctgaagaggctttctggcccacagcttcaatacctcaacatatgctcagagttaagctccaagttgagagcaattaactga
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| Protein seq | MQGGGGAASAAAAAAAAATQQHRELLERYELVRVRGRGSFAQVWEARHRRTGLSVAVKILNLAGLLASGIPIRKVEREIAVMRLLNHPHIVRFHEAIAGGDGGGHVYIVMELATQGQLYDYVTQLGRLREDDARRIFQQIISGAEYCHHNMVVHRDLKLENILMDSEMNVKIVDFGFSKFFRHNKLLAGRKYVGPPVDVWSCGVILYILFCGRLPFDSADVSELHRIIKRGEFSIPPYVPDDARDLISSMLIVRPDKRLTITEVRTHRWLQHSIPRYLAMPPLNARTQITRASIDAETVDKATVAYNLILNKKFDAPTRYVWTIDVYQEAGQSNTTGAAEATGSSAAGEPPVAVAGEDDGRNNGWALGGVEFHECPREAMRAIAAALRETGVVYAHDDDDRGRYGKLLCARFAGAAGVRRIIRSYLAATDDAPSSSSSAGGGSGRGEAGHGGGAPVDDALYKSEGEGNYLMDLKRLSGPQLQYLNICSELSSKLRAIN |
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| Function | Serine/threonine protein kinase OSK4 [UniProtKB/Swiss-Prot:Q852Q1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0006150 | OsLiXu_07g0006150.01 | Chr07 | 4967564 | 4972154 | + | NAM | ||
| CDS seq | atgcagggcggcggcggcgcggcgtcggcggcggcggcggcggcggcggcggcgacgcagcagcaccgggagctgctcgagcggtacgagctggtgcgggtgcgggggcgcggtagcttcgcgcaggtgtgggaggctcgccaccgccgcaccggcctcagcgtcgccgtcaagatcctcaacctcgccggacttctcgccagcggcatccccatccgcaaagtggagagggagatcgcggtgatgaggctgctgaaccacccgcacatcgtgcggttccacgaggcgatcgccggcggcgacggcggcggccacgtgtacatcgtgatggagctcgcgacgcaggggcagctctacgattacgtcacccagctcggccgcctccgcgaggatgacgctcgcaggatcttccagcagattatatcaggcgccgaatactgccaccacaacatggtcgtccaccgtgacctgaaactggagaacatcctgatggattcagagatgaacgtcaagatcgtcgacttcggtttcagcaagttcttcaggcacaacaagctactcgcgggtagaaaatatgttggtccacctgtggatgtttggagctgtggagtaatcctttacatcctcttctgtggacgcttgccctttgacagcgccgatgtatcagagctgcacaggatcatcaagagaggagagttcagtatcccaccgtacgtgcctgacgacgcgagggatctcatctccagcatgctgatcgtgagacctgacaagcgcctcaccatcaccgaggtcaggacgcaccgttggctgcagcactccatccctcgctacctcgcaatgcctcctctcaacgctcgcacacagatcaccagggcaagtattgatgctgagactgtcgacaaggcgacggtcgcctacaacctgatcctcaataagaagttcgatgccccaacacgttatgtttggacaattgacgtctatcaagaagctggacaaagtaacaccacgggagcagcagaagcaactggcagcagtgctgccggagagccgccggtcgccgtcgccggagaagacgacggacgcaacaacggatgggcgctgggaggggtggagttccacgagtgcccccgcgaggcgatgcgcgccatcgcggcggcgctgcgcgagaccggcgtcgtctacgcgcacgacgacgacgaccgcggccgctacggcaagctgctctgcgcacgcttcgccggcgccgccggcgtccgccgcatcatccgcagctacctcgccgccaccgacgacgcGCcctcctcttcctcctccgccggtggtggcagtggcagaggtgaggctggccatggcggtggagctcccgtcgatgatgctctgtacaagtcagaaggggaagggaattacctgatggatctgaagaggctttctggcccacagcttcaatacctcaacatatgctcagagttaagctccaagttgagagcaattaactga
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| Protein seq | MQGGGGAASAAAAAAAAATQQHRELLERYELVRVRGRGSFAQVWEARHRRTGLSVAVKILNLAGLLASGIPIRKVEREIAVMRLLNHPHIVRFHEAIAGGDGGGHVYIVMELATQGQLYDYVTQLGRLREDDARRIFQQIISGAEYCHHNMVVHRDLKLENILMDSEMNVKIVDFGFSKFFRHNKLLAGRKYVGPPVDVWSCGVILYILFCGRLPFDSADVSELHRIIKRGEFSIPPYVPDDARDLISSMLIVRPDKRLTITEVRTHRWLQHSIPRYLAMPPLNARTQITRASIDAETVDKATVAYNLILNKKFDAPTRYVWTIDVYQEAGQSNTTGAAEATGSSAAGEPPVAVAGEDDGRNNGWALGGVEFHECPREAMRAIAAALRETGVVYAHDDDDRGRYGKLLCARFAGAAGVRRIIRSYLAATDDAPSSSSSAGGGSGRGEAGHGGGAPVDDALYKSEGEGNYLMDLKRLSGPQLQYLNICSELSSKLRAIN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0006150 | OsLiXu_07g0006150.02 | Chr07 | 4967574 | 4972351 | + | IsoSeq | ||
| CDS seq | atgccccaacacgttatgtttggacaattgacgtctatcaagaagctggacaaagtaacaccacgggagcagcagaagcaactggcagcagtgctgccggagagccgccggtcgccgtcgccggagaagacgacggacgcaacaacggatgggcgctgggaggggtggagttccacgagtgcccccgcgaggcgatgcgcgccatcgcggcggcgctgcgcgagaccggcgtcgtctacgcgcacgacgacgacgaccgcggccgctacggcaagctgctctgcgcacgcttcgccggcgccgccggcgtccgccgcatcatccgcagctacctcgccgccaccgacgacgcGCcctcctcttcctcctccgccggtggtggcagtggcagaggtgaggctggccatggcggtggagctcccgtcgatgatgctgtcctcgagagcttgtctgcggctgtgttctttgaaattcagctgtacaagtcagaaggggaagggaatt
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| Protein seq | MPQHVMFGQLTSIKKLDKVTPREQQKQLAAVLPESRRSPSPEKTTDATTDGRWEGWSSTSAPARRCAPSRRRCARPASSTRTTTTTAAATASCSAHASPAPPASAASSAATSPPPTTRPPLPPPPVVAVAEVRLAMAVELPSMMLSSRACLRLCSLKFSCTSQKGKGI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr07 | 4969902 | 4970011 | + | OsLiXu_07g0006150.01 | OsLiXu_07g0006150.01,OsLiXu_07g0006150.02 | All |
| A5 | Chr07 | 4968583 | 4968889 | + | OsLiXu_07g0006150.02 | OsLiXu_07g0006150.02,OsLiXu_07g0006150.01 | All |
| A5 | Chr07 | 4970034 | 4970460 | + | OsLiXu_07g0006150.02 | OsLiXu_07g0006150.02,OsLiXu_07g0006150.01 | All |
| A5 | Chr07 | 4971605 | 4972035 | + | OsLiXu_07g0006150.02 | OsLiXu_07g0006150.02,OsLiXu_07g0006150.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.130483 | 0.737665 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0194100 | RBH | 0.258217 | 0.000000 | 1.532851 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g09610 | RBH | 0.176769 | 0.000000 | 0.399444 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0194100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0006080 | RBH | 0.0 | 0.0 | 0.666161 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0006040 | RBH | 0.0 | 0.000000 | 0.538213 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0005950 | RBH | 0.0 | 1.762884 | 2.164663 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0005870 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0006050 | RBH | 0.553294 | 0.000000 | 7.071759 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0085600 | RBH | 0.1526085 | 1.541802 | 0.54747 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0006540 | RBH | 0.0 | 0.0 | 0.625214 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0087500 | RBH | 0.2481405 | 1.5696585 | 0.738874 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0005970 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0005970 | RBH | 0.0 | 3.939554 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0006020 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0005980 | RBH | 0.0 | 0.410325 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G006170 | RBH | 0.0 | 0.450115 | 0.626734 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0005960 | RBH | 0.0 | 0.0 | 1.621504 |
