Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_06G020350 | OGI:06064550 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr06:23407594-23413175 | ||||||||
| Gene Symbol | HDAC1, OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702 | ||||||||||
| DNA seq | AAACTAAAGCTAATAATAGATACCACATAATAGTCAGCCTGGCATAAATGTATTGCACAAAACACCACCAGTTCGAAAGGTGTACATACCATTCGAGATTTGGTATATAACTTTTGGTATGGCATGAACTCTCTGCTTCAAAGTTGGAGTTTCTCCAATATAATCAATGGACGATAGATGGCATCAGTTACTAAGTTTTAAGGTAGAGAGAATTATTATGGCTTCTGGTGCACCGATGGTTGATCTTGCAATTTGTTCGAGTTATCTGGCTCGACTTTCAGGGAGCCTGGTTCGTCTATGGCCATTGCACTTGCATCGGTAGGCTGCAGTTGTCAAAGAGCAAACATAAAAGGCAGCCGTTGTTACCACAGAGATCCATGACAGTTCACTTACGTGCAAGTCTACCTTTTGCAAGATTACAAGTTTGCACAAATAAAAGAGCACTTACAACAGTTTGTTTCGAGGAACCAACTCCATCAGCCACAGGTTCTGTGCCCTTGGTGTGCTCTGCAGCGACCCTATTACCATCCTGCAACATACAAATAACAAGACAAACAGAGAATGATTAAGTTGAAGATTAAGTTTTCACTGATGAAGATGAAGATGAGGATTAAGTTGACGTACGTAAAACGAGAAAACCATTAGCACATGATTAATTAAATTTTAATTATTACAAACTTGACAAATGGATATATTTGATATTTTAAAGCAACTTATATATAGAAAGTTTTCACAGGAACACACGGTTTAGTAGTTTGAAAAGTGTCCTAACGGAAACCAAGGTAAAATCTGAATCTTAATCAGAAAAGAACAGGGACATCTGAAGAGAAAATTCCTTATTTGACATCTGAAGTTAACAAGTTTCCTTAGTAGACATCTAAATTAGATGCTTCCCTTATATTGCCGAGCAATTTTTCGCATCCCTCATAAGCCACTACGGACGCCACCGTTAAAAATTGCCATTAGCGGAGTTTGTCAGTAGCGTACGCAAATGGTAAAATGCCCCTGAGCCCACTTGTCAGCATCATCTTTTATCTATTCTTTTTCCTCATCTCTACAAATCTCGCTCCTCCCACTGGCCTTGGATACCGTATTGAGCTGCCACCGCACTTAACATCCGTCATGCTACACTCCACCTCCTGCTCGCCATGCCATGGTGGATTGTGACTCAACTCTGGTGCCCCTTCCTCCAGATGAGGTCAACCATGGTAAGGGCGATGAAGTTGTGCAGAGCATGTTGCAGCAGGGTTGTATGCCGGCACTTGTGCTGCCCGACCCTGGGTTTAGCTCCTCCTGGTAGGCCTGAAATGACAAACTTCACTGATTTGGAGCTCATGGAAGAACAGGATATGAATCTCCGAATCTTTGGATACATGCCCTCTTTGCAGTCTCCAAAGTGTGAGCTGAGCTAACCACTTCCTCACAGCTTGTCCATATCTTGCAGGTCCAACTACATTTCGAATTTACACCACTCTTTTTTTTCTTTCTGGTGTTTGAAAAACTTAAGCTATGTGGTAATATTTTTTTCCTATTTTTTCATGCATTTTTTTTTCTATATTGGCACTGCCACCGAGACACAGCCTTGCTGAGGCGGTAGGCAGTTGTTGCCTAGATGCAATGATCCTGTTCAGTGCTTGTGTAGCGCCTGGAAGAGAACACATTGAACCTGTTAAGTAGGCCAACATGCAGCGCTTTTTACTGTACAGCACAACCCAAGCTGAATAGCGGCAGCACCGCAGCAGATGGTAATCAAGCAGAGCTGTAAGCGTGTCCCGCTGCAGCCACTGTAGCTGCTGCGGCAGTGCAGCTGCAGCACTGCAGCAGTTAGTTCTACCAAACAAGACCATTGACGAGATGGATAAATTTTTTATTTGATTCCATACGAGGGAATAACACTTTTTGGTGGCAATAAGGGATTTACTATAAGATGTTAAATGATGAATGCAACAATACTTTTACTAGAACTGCACCAACAGCAAAAGACCAACGGTAGAACAACGGAGCATCAAACTTTCACAAGTCCGAGGAAATTATTTGATATACATAACCACAGTGAATTGATAAATTAGAATTGCACTTGCAAAGAACAGATATTCCCATTACCCTAACTCGTCCATGTACTTGAAAAGTCAAATTTTGTAAGCTCTAACCAACAATGGTTCACTGTACAAAAGTTGTACCAGTGGATTCATATTCGGAAGTGCTTCCACATGAATTGGTTTTGTTGCCATTAACAATATATTGTAAGAAGTCAAACTGTCAAATTATACTTTTGAAGCCTATGCAAATCACTTATCAATTAGAATTACTATTAGAAATAAGTCCCAACAGGGTGCAAATGTGCATCAGAACATTTGAGAAATCTGAATTAAATATCTGACTCTCAAGAATCAAACCGTGCTGGATCCTATATAGCTTCATTCATCTTACAACCTTAACTAAAATTAAGGGCTAAGGTTGAAAAACTAATACCAACACCCAAGGACCATAAAAGAAACCATGATACAGACATACAAATACGGCACTGATGCATTATCCAGAAAAATGAAATTAGATTTTCATGTTGTATAGTCATATCATAATAGTTGTCCTTTACTTTGCTATGATGATTCAGCTCTTCCAATCCTTAATGTTTAATTTGAAAAGTTGAGTATGTAAATTTCAGAACTGTCGCTACAGCAAGGATTAAAATTCAAAATATTCAACATCACAACACATCAACTCACAATTGCTGTCTTTCGCAGTCCACGGCTATTTAATATCAATATGCTCTCTGAAGATGCAACAACCATTCAGAAAGGAACAAACAGCAGAATACACTATTCATGAAAGAAAGTATAGCTGCTTACACACCTTTGAGCACACATTAACCATAACAACTGTCACCACCAGCACATAACATTACTTCAATAAGTTTTAATAGAAAAATACCTGATCTGCAGCATCTGTTTCAGCAGACTCTCTCTTAACTCTCACATTCTGAATACTGCTCCTCCTAAAAGACAAAAGGATCATCAGACCATGTCATATGATTCTAACTGCTAGAAACACCTGAACGGTTACAGAACTGAATAGAAACAAATACCTTCCTGAGTCATCCAAAGGTTTGACATCATCCATTTCCACATCAGAATCAGCATGATGCCTTTCATCAGGATCCTCTTGGTCTTCATCTTGCTGCACGAGACAAATAGATGTAACTCATGTAACTAAGCGAAAATCCTTCCTCTCACTTCCGAAGCTACATCCATAGTCAATATGGGCATGCCCCTGGGCATCTTACAACACTTGTAAAGTTTCAAGGCTATAAACTGAGACACATCAGACAACTGGTCCTTATGCTAGGAATTAGTACTTTAAATTATATGCATTCAGCTTGAAAATTCAAAGTCAATTTGAACATTATTGACAGAATGTGAAGTGCCAGCATTAGAGCACACATAACAGATTACTTCAAGCATGAAAAAATCTGCATAGATAATTCATGCCATAATATAAAGCTTTTGACCATAAAACAAAAAACGAACTTTTCATAATTCAATCATGTAAAAATAACTAACCACCTGTCAATTTGGCATTCCTGATATTTCCGGAGCTAACATCTACAATTCATACAAATTGTGAAATATTATTATTTACAGCAACTACTAGAAAGACGCCTTAAACTCCTTTATCGTTGAAGCTGAGGAATTCTACAGGACAAAAAATAACCATAATGCAAATAATTTCTCACTCACCTCAGGTAGCTCAGCCTCAGGGGGTCGCTCTTGAAATTGGACGCTAGGAGCATGTCGAAGTTTTGAAAGATTATCAAGAAGTCTTGATCTTATATCATCCAATTGCTGGCGTGTGTTTTTGTTCTCCATGTTACTTGGTGCAACATGAAGTGTATAATCTGGACCAAAGTACTCAAAATACTCATTTGGAGGCATCTTGTCGGTGAGCTCATGACCAAGTGCAACTCCTGTCTGCATAAACATAAGGAGACAAATAAGACCATATGGGAAACTAATGATTACAATAAAAGAAACATGCGTCTAAAAGCATTAGAAGCTCAAAATATTTCATAAAATTCTCAGACAATCATTGGTTATATACTGTTAAATTTCAGTGATTAAAAGTACAATAATTATCAAACAATCCATAGTAGTTCATAACAAAGTGAGTTGTGCTTATTAGAATAGCTAGAACAGTTTGAAATGATTAACAGAGGGTTTTTTTTTACATAAGTACTTATAGATGTGAGTCACTTAGTCAAAACAGTTGTCCAAGGTGATACATACACATGTTAGGCATAGTGCCGGCGCTAAAAAGGATGCTAGAAGAACTGACATTTCATACAGCTTTGAAGTTAATAAATTAGTGCAGGCTCTTCAAACAAAAACAATAGAGAAATGTATATCCAGGAAAAGCCCCTGATACATACCTCATAGCACCAACACCGTGCAACATTTCTTATGGTATACCCACCACCACCAAGCAGCAACAGCGGGACGTTGAAGGACCTCATGAATCTCACACATTCCGCGTGGCCCCTGATCGATAGGTTGAAGCAACCCAACCGATCACCTGACAGAGAGTCCGCACCACACTGGAGCACCACCGCGCCAGGGCGAAAAACCTCCATCACCTTCCCCATGATCGGCTTGAACAACGACTGGTAGCTCTCATCGTCAATACCGTCGTCCAACGGGACATTCAGAGAGTAATACTTCCCCTTTGAGTGCCCAATATCGCGAATGTCCCCGGTCCCCGGGAAATAATCCCCAAACTTGTGGAACGAGACCGTCATCACCCTGTCCGTCGTGTAAAACGCCTCCTCCACACCATCCCCATGGTGGATATCGATGTCCACATAGAGAACACGCTGCAACACAAAAAACAATTAGCACGCCCAAAACCCTAATTCCGCAAGATTACTGAATCATCACCACCTGGTGGTATTTGAGGAGCTCGAGGATGGCGAGGACGATGTCGTTGACGTAGCAGAAGCCGGAGGCCTCGCACTTCTTGGCGTGGTGGAGGCCGCCGGCCCAGTTGATGGCGATGTCGTGGCCGTGGTTGAGCTTGACGGCGCCGCCGACGGATCCCCCGGCGTAGGTCTGGCAGAAGCTGTAGAGGCCGTCGAAGACGGGGCAGTCCTCGCCGACGTTGAAGCGCTTGAGCGCCCGGATCTGGTCCTGCTGGGTCTCCGGCGTGACGGAGCGGAGGAAGGCGACGTAGTCGTCGGCGTGGAAGCGGCAGAGGTCGCGGTCGCGCGCCGGGTGGGGCTTGAGCACCTGCATCTGGTCGAGGAGGCCGTAGTGGGCGAGCAGCGCGTGGGTCATCCGGATGCGGTGGGGCTTCATCGGGTGCCCCTGCCCGTAGTAGTAGTTCCCCACCTCCGCGTCGTAGAAGTAGCACACCCGCCGCTTGGCCCCGTCGGCCCCCGCCGTCGGCAGCGAGTTCCCCCCGCCTCCGGCGGAGGCGTCCATGGCGGCGGCGGCGAGGAGGAGGAGGAGGAGGAGATTTTTTTTTTTATCTCTTTTTTTTTCTTTTCCCCTCTTTGCCCTCTCCTTGGGTTTGGGTTTGGGCTCGCGGGC
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| CDS seq | ATGGACGCCTCCGCCGGAGGCGGGGGGAACTCGCTGCCGACGGCGGGGGCCGACGGGGCCAAGCGGCGGGTGTGCTACTTCTACGACGCGGAGGTGGGGAACTACTACTACGGGCAGGGGCACCCGATGAAGCCCCACCGCATCCGGATGACCCACGCGCTGCTCGCCCACTACGGCCTCCTCGACCAGATGCAGGTGCTCAAGCCCCACCCGGCGCGCGACCGCGACCTCTGCCGCTTCCACGCCGACGACTACGTCGCCTTCCTCCGCTCCGTCACGCCGGAGACCCAGCAGGACCAGATCCGGGCGCTCAAGCGCTTCAACGTCGGCGAGGACTGCCCCGTCTTCGACGGCCTCTACAGCTTCTGCCAGACCTACGCCGGGGGATCCGTCGGCGGCGCCGTCAAGCTCAACCACGGCCACGACATCGCCATCAACTGGGCCGGCGGCCTCCACCACGCCAAGAAGTGCGAGGCCTCCGGCTTCTGCTACGTCAACGACATCGTCCTCGCCATCCTCGAGCTCCTCAAATACCACCAGCGTGTTCTCTATGTGGACATCGATATCCACCATGGGGATGGTGTGGAGGAGGCGTTTTACACGACGGACAGGGTGATGACGGTCTCGTTCCACAAGTTTGGGGATTATTTCCCGGGGACCGGGGACATTCGCGATATTGGGCACTCAAAGGGGAAGTATTACTCTCTGAATGTCCCGTTGGACGACGGTATTGACGATGAGAGCTACCAGTCGTTGTTCAAGCCGATCATGGGGAAGGTGATGGAGGTTTTTCGCCCTGGCGCGGTGGTGCTCCAGTGTGGTGCGGACTCTCTGTCAGGTGATCGGTTGGGTTGCTTCAACCTATCGATCAGGGGCCACGCGGAATGTGTGAGATTCATGAGGTCCTTCAACGTCCCGCTGTTGCTGCTTGGTGGTGGTGGGTATACCATAAGAAATGTTGCACGGTGTTGGTGCTATGAGACAGGAGTTGCACTTGGTCATGAGCTCACCGACAAGATGCCTCCAAATGAGTATTTTGAGTACTTTGGTCCAGATTATACACTTCATGTTGCACCAAGTAACATGGAGAACAAAAACACACGCCAGCAATTGGATGATATAAGATCAAGACTTCTTGATAATCTTTCAAAACTTCGACATGCTCCTAGCGTCCAATTTCAAGAGCGACCCCCTGAGGCTGAGCTACCTGAGCAAGATGAAGACCAAGAGGATCCTGATGAAAGGCATCATGCTGATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAGGAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGATGCTGCAGATCAGGTATTTTTCTATTAA
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| Protein seq | MDASAGGGGNSLPTAGADGAKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLDQMQVLKPHPARDRDLCRFHADDYVAFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHGHDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKYHQRVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGHSKGKYYSLNVPLDDGIDDESYQSLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGHELTDKMPPNEYFEYFGPDYTLHVAPSNMENKNTRQQLDDIRSRLLDNLSKLRHAPSVQFQERPPEAELPEQDEDQEDPDERHHADSDVEMDDVKPLDDSGRRSSIQNVRVKRESAETDAADQVFFY |
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| Function | Histone deacetylase 1 [UniProtKB/Swiss-Prot:Q7Y0Y8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_06G020350 | OsN22_06G020350_01 | Chr06 | 23410324 | 23413175 | - | NAM | ||
| CDS seq | ATGGACGCCTCCGCCGGAGGCGGGGGGAACTCGCTGCCGACGGCGGGGGCCGACGGGGCCAAGCGGCGGGTGTGCTACTTCTACGACGCGGAGGTGGGGAACTACTACTACGGGCAGGGGCACCCGATGAAGCCCCACCGCATCCGGATGACCCACGCGCTGCTCGCCCACTACGGCCTCCTCGACCAGATGCAGGTGCTCAAGCCCCACCCGGCGCGCGACCGCGACCTCTGCCGCTTCCACGCCGACGACTACGTCGCCTTCCTCCGCTCCGTCACGCCGGAGACCCAGCAGGACCAGATCCGGGCGCTCAAGCGCTTCAACGTCGGCGAGGACTGCCCCGTCTTCGACGGCCTCTACAGCTTCTGCCAGACCTACGCCGGGGGATCCGTCGGCGGCGCCGTCAAGCTCAACCACGGCCACGACATCGCCATCAACTGGGCCGGCGGCCTCCACCACGCCAAGAAGTGCGAGGCCTCCGGCTTCTGCTACGTCAACGACATCGTCCTCGCCATCCTCGAGCTCCTCAAATACCACCAGCGTGTTCTCTATGTGGACATCGATATCCACCATGGGGATGGTGTGGAGGAGGCGTTTTACACGACGGACAGGGTGATGACGGTCTCGTTCCACAAGTTTGGGGATTATTTCCCGGGGACCGGGGACATTCGCGATATTGGGCACTCAAAGGGGAAGTATTACTCTCTGAATGTCCCGTTGGACGACGGTATTGACGATGAGAGCTACCAGTCGTTGTTCAAGCCGATCATGGGGAAGGTGATGGAGGTTTTTCGCCCTGGCGCGGTGGTGCTCCAGTGTGGTGCGGACTCTCTGTCAGGTGATCGGTTGGGTTGCTTCAACCTATCGATCAGGGGCCACGCGGAATGTGTGAGATTCATGAGGTCCTTCAACGTCCCGCTGTTGCTGCTTGGTGGTGGTGGGTATACCATAAGAAATGTTGCACGGTGTTGGTGCTATGAGACAGGAGTTGCACTTGGTCATGAGCTCACCGACAAGATGCCTCCAAATGAGTATTTTGAGTACTTTGGTCCAGATTATACACTTCATGTTGCACCAAGTAACATGGAGAACAAAAACACACGCCAGCAATTGGATGATATAAGATCAAGACTTCTTGATAATCTTTCAAAACTTCGACATGCTCCTAGCGTCCAATTTCAAGAGCGACCCCCTGAGGCTGAGCTACCTGAGCAAGATGAAGACCAAGAGGATCCTGATGAAAGGCATCATGCTGATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAGGAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGATGCTGCAGATCAGGTATTTTTCTATTAA
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| Protein seq | MDASAGGGGNSLPTAGADGAKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLDQMQVLKPHPARDRDLCRFHADDYVAFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHGHDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKYHQRVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGHSKGKYYSLNVPLDDGIDDESYQSLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGHELTDKMPPNEYFEYFGPDYTLHVAPSNMENKNTRQQLDDIRSRLLDNLSKLRHAPSVQFQERPPEAELPEQDEDQEDPDERHHADSDVEMDDVKPLDDSGRRSSIQNVRVKRESAETDAADQVFFY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_06G020350 | OsN22_06G020350_02 | Chr06 | 23407594 | 23413151 | - | IsoSeq | ||
| CDS seq | AGGAGAGGGCAAAGAGGGGAAAAGAAAAAAAAAGAGATAAAAAAAAAAATCTCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCATGGACGCCTCCGCCGGAGGCGGGGGGAACTCGCTGCCGACGGCGGGGGCCGACGGGGCCAAGCGGCGGGTGTGCTACTTCTACGACGCGGAGGTGGGGAACTACTACTACGGGCAGGGGCACC
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| Protein seq | RRGQRGEKKKKEIKKKISSSSSSSPPPPWTPPPEAGGTRCRRRGPTGPSGGCATSTTRRWGTTTTGRGT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.266706 | 8.944427 | 9.603296 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0583400 | RBH | 6.309719 | 6.627637 | 18.956621 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g38470 | RBH | 4.171994 | 4.339273 | 4.723655 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0583400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020670 | RBH | 5.144213 | 48.523483 | 20.719198 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0020470 | RBH | 1.458014 | 12.080674 | 10.161352 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020600 | RBH | 5.958642 | 36.655769 | 23.410694 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020380 | RBH | 0.969796 | 1.001552 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020780 | RBH | 28.147612 | 43.795013 | 43.947678 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0361700 | RBH | 18.529461 | 39.093895 | 37.8721065 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0020190 | RBH | 1.460895 | 2.121541 | 3.778645 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0337400 | RBH | 26.6834525 | 46.968899 | 56.8766345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020640 | RBH | 0.309472 | 0.291137 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020680 | RBH | 2.307787 | 40.448097 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020290 | RBH | 26.204432 | 43.638390 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0020980 | RBH | 1.289935 | 2.317423 | 0.967358 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020440 | RBH | 1.232781 | 19.406281 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G008810 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020600 | RBH | 4.274674 | 61.582783 | 25.070045 |
