Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsCMeo_06g0020600 OGI:06064550 | 16/16 CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) Chr06:22562179-22568079
Gene Symbol HDAC1, OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702
DNA seq

aatgtccgaaggggaaattaacatgtagaagatgttagaatttcactctaaatacctaaacaacaaagagacgcccccatgtaggtattagggatgagaagagagacaaagcttatagctcccaccaaagcaacgcctgctgcctgtccctatacatacatatacatacattgctgaagtcacaaccaatggtttgacatctgtctcacattgcttgatggatccagaatatattgcacgactataccgattgctcgacagcagacagggttaaactaaagctaataatagataccacataatagtcagcctggcataaatgtattgcacaaaacaccaccagttcgaaaggtgtatataccattcgagatttggtatataacttttggtatggcatgaactctctgcttcaaagttggagtttctccaatataatcaatggacgatagatggcatcagttactaagttttaaggtagagagaactattatgacttctggtgcaccgatggttgatcttgcaatttgtttgagttatctggctcgactttcagggagcctggttcgtctatggccatcgcacttgcatcggtaggctgcagttgtcaaagagcaaacatgaaaaggcagccgttgttaccacagagatccatgacagttcacttacgtgcaagtctaccttttgcaagattacaagtttgcacaaataaaagagcacttacaacagtttgtttcgaggaaccaactccatcagccgcaggttctgtgcccttggtgtgctctgcagcgaccctattaccatcctgcaacatacaaataacaaggcaaactatttattaccaacagagaatgattaagttgaagattaagttttcactgatgaagatgaagatgaagatgaggattaagtcgacgtacgtaaaacgagaaaaccattagcacatgattaattaaattttaattattacaaacttgacaaatggatatatttaatattttaaagcaacttatatatagaaagttttcacaggaacacaccgtttagtagtttgaaaagcgtcctaacggaaaccaaggtaaaatctgaatcttaatcagaaaagaacaaggacatctgaagagaaaattccttatttgacatctgaaattaacaagtttccttattcgacatctaaattagatgcttcccttatgttaccgagcaatttttcgcatccctcataagccactacggacgccactgttaaaaattgccattagcagagtttgtcagtagcgtacacaaatggtaatatgcccctgagcccacttgtcagcatcatctcttatctattatttttcctcatctctacaaatctcgctcctcccaccggccttggataccgtattgagctgccaccgcacttaacatccgtcatgctacactccacctcctgctcgccatgccatggtggattgtgactcaactctggtgccccttcctccaggtgaggtcaaccatggtaagggcgatgaagttgtgcagagcatgttgcagcagggttgtgtgctggcacttgtgctgcccgaccctgggtttagctcctcctggtaggcctgaaatgacaaacttcactgatttggagctcatggaagaacaggatatgaatctccgaatttttggatacctgccctctttgcagtctccaaagtgtgagctgagctaaccacttcctcacagcttgtccatatcttgcaggtccaactacatttcgaatttacaccactctttttttttctttctggtgtttgaaaaacttaagctgtgtggtaattttttttcctattttgtcatgcattttttttctatattggcactgccaccgagacacagccttgctctgtggaggcggtaggcagttgttgcctagatgcaatgatcctgttcagtgcttgtgtagcgcccggaagagaacacattggacctgttaggtaggccaacatgcagcgctttttactgtacagcacagcccgagctgaacagcagcagcaccgcagcggatggtaatcaagcagagctgtaagcgtgtcccgctgcagccactgtagctgctgcagcagtgcagctgcagcactgcagccgctagttctaccaaacaagaccattgacgagatggataaattttttatttgattccatacgagggaataacactttttggtggcaataagggatttactataagacgttaaatgatcaatgcaacaattcttttactagaactgcaccaacagcaaaagaccaacggtagaacaagggagcatcaaactttcacaagtctgaggaaattatttgatatacataaccacagtgaattgataaattagatttgcacttgcaaagaaaaggtattcccattgccctaactcgtccatgtacttgaaaagtcaaaatttgtaagctctaaccaacaatgagtcaaattatattcgcaagtttactgtacaaaagttgtaccagtggattcatattcggaagtgcttccacatgaattggttttgttgccattaacaatatattgtaagatgtcaaactgtcaaattatacttttgaagcctatgcaaatcacttatcaaatagaattactattagaaataagtcccaacagggtgcaaatgtgcatcagaacatttgagaaatctgaattaaatatctgactctcaagaatcaaatcgtgctggatcctatatagcctcattcatcttacaaccttaactaaaattaagggctaaggttgaaaaactaataccaacacccaaggaccataaaagaaaccatgatacagacatacaaatacggcactgatgcattatccagaaaaatgaaattagattttcatgttgtatagtcacatcacaatagttgtcctttactttgctatgatgattcagctcttccaatccttaatgtttaatttgaaaagttgagtatgtaaatttcagaactgtcgctacagcaaggattaaaattcaaaatattcaacatcacaacacatcaactcacaattgctgtctttcgcagtccacagctatttaatatcaatatgctctctgaagatgcaacaaccattcagaaaggaacaaacagcagaatacactattcatgaaagaaagtatagctgcttacacacctttgagcacacattaaccataacaactgtcaccaccagcacataacattacttcaataagttttaatagaaaaatacctgatctgcggcatctgtttcagcagactctctcttaactctcacattctgaatactgctcctcctaaaagacaaaaggatatacatcagaccatgtcatatgattctaactgctagaaacacctgaacggttaaagaactgaatagaaacaaataccttcctgagtcatccaaaggtttgacatcatccatttccacatcagaatcagcatggtgcctttcatcaggatcctcttggtcttcatcttgctgcacgagacacatagatgtaactcatgtaactaagcgaaaatccttcctctcacttccgaagctacatccatagtcaatatgggcatgcccctgggcatcttacaacacttgtaaagtttcaaggctataaactgaaacacatcagacaactggtccttatgctaggaattagtaatttaaattatatgcattcagcttgaaaattcaaagtcaatttgaacattattgacagaatgtgaagtgccagcattagagcacacataacagattacttcaagcatgaaaaaatctgcatagataattcatgccataatataaagcttttgaccataaaacaaaaaacgaacttttcataattcaatcatgtaaaaataactaaccacctgtcaatttggcattcctgatatttccagagctaacatttacaattcatacaaattgtgaaatattattatttacagcaactactagaaagacgccttatactcctttatccttgaagctgaggaattctacaggacaaaaaataaccataatgcaaataatttctcactcacctcaggtagctcagcctcagggggtcgctcttgaaattggacactaggagcatgtcgaagttttgaaagattatcaagaagtcttgatcttatatcatccaattgctggcgtgtgtttttgttctccatgttacttggtgcaacatgaagtgtataatctggaccaaagtactcaaaatactcatttggaggcatcttgtcagtgagctcatgaccaagtgcaactcctgtctgcataaacataaggagacaaataagaccatatgggaaattaatgattacaataaaagaaacatgcgtctaaaagcattagaagctcaaagtatttcataaaattctcagacaattattggttatatactgttaaatttcagtgattaaaagtacaataattatcaaacaatccatagtagttcataacaaagtgagttgtgcttattagaatagctagaacagtttgaaatgattaacagagggttttttttttttttacataagtacttatagatgtgagtcacttagtcaaaacagttgtccaaggtgatacacacacatgttaggcatagtgccggcgctaaaaaggatgctagaagaactatgacatttcatacagctttgaagttaataaattagtggaggctcttcaaacaagaacagagaaatgtatatccaggaaatgcccctgatacatacctcatagcaccaacaccgcgcaacatttcttatggtatacccaccaccaccaagcagcaacagcgggacgttgaaggacctcatgaatctcacacattctgcgtggcccctgatcgacaggttgaagcaacccaacctatcacccgacagagagtccgcaccgcactggagcaccaccgcgccagggcgaaaaacctccatcaccttccccatgatcggcttgaacaacgactggtagctctcgtcgtcgataccgtcatccaacgggacattcagagagtaatacttcccctttgagtgcccaatatcgcgaatgtccccggtccccgggaaataatccccaaacttgtggaacgagaccgtcatcaccctgtccgtcgtgtagaacgcctcctccacaccatccccatggtggatatcgatatccacatagagaacacgctgcaatacaaaaacaattagcacgcccaaaaccctaattccacaagattataaaatcatcgcatacctggtggtatttgaggagctcgaggatggcgaggacgatgtcgttgacgtagcagaagccggaggcctcgcacttcttggcgtggtggaggccgccggcccagttgatggcgatgtcatggccgtggttgagcttgacggcgccgccgacggatcccccggcgtaggtctggcagaagctgtagaggccgtcgaagacggggcagtcctcgccgacgttgaagcgcttgagcgcccggatctggtcctgctgggtctccggcgtgacggagcggaggaaggcgacgtagtcgtcggcgtggaagcggcagaggtcgcggtcgcgcgccgggtggggcttgagcacctgcatctggtcgaggaggccgtagtgggcgagcagcgcgtgggtcatccggatgcggtggggcttcatcgggtgcccctgcccgtagtagtagttccccacctccgcgtcgtagaagtagcacacccgccgcttggccccgtcggcccccaccgtcggcagcgagttccccccgcctccggcggaggcgtccatggcggcggcggcgaggaggaggaggaggagatttttttttatctcttttttttttcttttcccctctttgccctctccttgggtttgggtttgggctcgcgggc

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CDS seq

atggacgcctccgccggaggcggggggaactcgctgccgacggtgggggccgacggggccaagcggcgggtgtgctacttctacgacgcggaggtggggaactactactacgggcaggggcacccgatgaagccccaccgcatccggatgacccacgcgctgctcgcccactacggcctcctcgaccagatgcaggtgctcaagccccacccggcgcgcgaccgcgacctctgccgcttccacgccgacgactacgtcgccttcctccgctccgtcacgccggagacccagcaggaccagatccgggcgctcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctctacagcttctgccagacctacgccgggggatccgtcggcggcgccgtcaagctcaaccacggccatgacatcgccatcaactgggccggcggcctccaccacgccaagaagtgcgaggcctccggcttctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaaataccaccagcgtgttctctatgtggatatcgatatccaccatggggatggtgtggaggaggcgttctacacgacggacagggtgatgacggtctcgttccacaagtttggggattatttcccggggaccggggacattcgcgatattgggcactcaaaggggaagtattactctctgaatgtcccgttggatgacggtatcgacgacgagagctaccagtcgttgttcaagccgatcatggggaaggtgatggaggtttttcgccctggcgcggtggtgctccagtgcggtgcggactctctgtcgggtgataggttgggttgcttcaacctgtcgatcaggggccacgcagaatgtgtgagattcatgaggtccttcaacgtcccgctgttgctgcttggtggtggtgggtataccataagaaatgttgcgcggtgttggtgctatgagacaggagttgcacttggtcatgagctcactgacaagatgcctccaaatgagtattttgagtactttggtccagattatacacttcatgttgcaccaagtaacatggagaacaaaaacacacgccagcaattggatgatataagatcaagacttcttgataatctttcaaaacttcgacatgctcctagtgtccaatttcaagagcgaccccctgaggctgagctacctgagcaagatgaagaccaagaggatcctgatgaaaggcaccatgctgattctgatgtggaaatggatgatgtcaaacctttggatgactcaggaaggaggagcagtattcagaatgtgagagttaagagagagtctgctgaaacagatgccgcagatcaggatggtaatagggtcgctgcagagcacaccaagggcacagaacctgcggctgatggagttggttcctcgaaacaaactgttcctaccgatgcaagtgcgatggccatagacgaaccaggctccctgaaagtcgagccagataactcaaacaaattgcaagatcaaccatcggtgcaccagaagtcataa

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Protein seq

MDASAGGGGNSLPTVGADGAKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLDQMQVLKPHPARDRDLCRFHADDYVAFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHGHDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKYHQRVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGHSKGKYYSLNVPLDDGIDDESYQSLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGHELTDKMPPNEYFEYFGPDYTLHVAPSNMENKNTRQQLDDIRSRLLDNLSKLRHAPSVQFQERPPEAELPEQDEDQEDPDERHHADSDVEMDDVKPLDDSGRRSSIQNVRVKRESAETDAADQDGNRVAAEHTKGTEPAADGVGSSKQTVPTDASAMAIDEPGSLKVEPDNSNKLQDQPSVHQKS

Function Histone deacetylase 1 [UniProtKB/Swiss-Prot:Q7Y0Y8]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsCMeo_06g0020600 OsCMeo_06g0020600.04 Chr06 22562179 22564322 - NAM
CDS seq

atggtcttgtttggtagaactagcggctgcagtgctgcagctgcactgctgcagcagctacagtggctgcagcgggacacgcttacagctctgcttgattaccatccgctgcggtgctgctgctgttcagctcgggctgtgctgtacagtaaaaagcgctgcatgttggcctacctaacaggcctaccaggaggagctaaacccagggtcgggcagcacaagtgccagcacacaaccctgctgcaacatgctctgcacaacttcatcgcccttaccatggatggtaatagggtcgctgcagagcacaccaagggcacagaacctgcggctgatggagttggttcctcgaaacaaactgttcctaccgatgcaagtgcgatggccatagacgaaccaggctccctgaaagtcgagccagataactcaaacaaattgcaagatcaaccatcggtgcaccagaagtcataa

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Protein seq

MVLFGRTSGCSAAAALLQQLQWLQRDTLTALLDYHPLRCCCCSARAVLYSKKRCMLAYLTGLPGGAKPRVGQHKCQHTTLLQHALHNFIALTMDGNRVAAEHTKGTEPAADGVGSSKQTVPTDASAMAIDEPGSLKVEPDNSNKLQDQPSVHQKS

Gene Transcript Chromosome Start End Strand Source
OsCMeo_06g0020600 OsCMeo_06g0020600.02 Chr06 22562179 22568079 - NAM
CDS seq

atggacgcctccgccggaggcggggggaactcgctgccgacggtgggggccgacggggccaagcggcgggtgtgctacttctacgacgcggaggtggggaactactactacgggcaggggcacccgatgaagccccaccgcatccggatgacccacgcgctgctcgcccactacggcctcctcgaccagatgcaggtgctcaagccccacccggcgcgcgaccgcgacctctgccgcttccacgccgacgactacgtcgccttcctccgctccgtcacgccggagacccagcaggaccagatccgggcgctcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctctacagcttctgccagacctacgccgggggatccgtcggcggcgccgtcaagctcaaccacggccatgacatcgccatcaactgggccggcggcctccaccacgccaagaagtgcgaggcctccggcttctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaaataccaccagcgtgttctctatgtggatatcgatatccaccatggggatggtgtggaggaggcgttctacacgacggacagggtgatgacggtctcgttccacaagtttggggattatttcccggggaccggggacattcgcgatattgggcactcaaaggggaagtattactctctgaatgtcccgttggatgacggtatcgacgacgagagctaccagtcgttgttcaagccgatcatggggaaggtgatggaggtttttcgccctggcgcggtggtgctccagtgcggtgcggactctctgtcgggtgataggttgggttgcttcaacctgtcgatcaggggccacgcagaatgtgtgagattcatgaggtccttcaacgtcccgctgttgctgcttggtggtggtgggtataccataagaaatgttgcgcggtgttggtgctatgagacaggagttgcacttggtcatgagctcactgacaagatgcctccaaatgagtattttgagtactttggtccagattatacacttcatgttgcaccaagtaacatggagaacaaaaacacacgccagcaattggatgatataagatcaagacttcttgataatctttcaaaacttcgacatgctcctagtgtccaatttcaagagcgaccccctgaggctgagctacctgagcaagatgaagaccaagaggatcctgatgaaaggcaccatgctgattctgatgtggaaatggatgatgtcaaacctttggatgactcaggaaggaggagcagtattcagaatgtgagagttaagagagagtctgctgaaacagatgccgcagatcagagagcatattga

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Protein seq

MDASAGGGGNSLPTVGADGAKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLDQMQVLKPHPARDRDLCRFHADDYVAFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHGHDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKYHQRVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGHSKGKYYSLNVPLDDGIDDESYQSLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGHELTDKMPPNEYFEYFGPDYTLHVAPSNMENKNTRQQLDDIRSRLLDNLSKLRHAPSVQFQERPPEAELPEQDEDQEDPDERHHADSDVEMDDVKPLDDSGRRSSIQNVRVKRESAETDAADQRAY

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Gene Transcript Chromosome Start End Strand Source
OsCMeo_06g0020600 OsCMeo_06g0020600.03 Chr06 22564023 22568079 - NAM
CDS seq

atggacgcctccgccggaggcggggggaactcgctgccgacggtgggggccgacggggccaagcggcgggtgtgctacttctacgacgcggaggtggggaactactactacgggcaggggcacccgatgaagccccaccgcatccggatgacccacgcgctgctcgcccactacggcctcctcgaccagatgcaggtgctcaagccccacccggcgcgcgaccgcgacctctgccgcttccacgccgacgactacgtcgccttcctccgctccgtcacgccggagacccagcaggaccagatccgggcgctcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctctacagcttctgccagacctacgccgggggatccgtcggcggcgccgtcaagctcaaccacggccatgacatcgccatcaactgggccggcggcctccaccacgccaagaagtgcgaggcctccggcttctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaaataccaccagcgtgttctctatgtggatatcgatatccaccatggggatggtgtggaggaggcgttctacacgacggacagggtgatgacggtctcgttccacaagtttggggattatttcccggggaccggggacattcgcgatattgggcactcaaaggggaagtattactctctgaatgtcccgttggatgacggtatcgacgacgagagctaccagtcgttgttcaagccgatcatggggaaggtgatggaggtttttcgccctggcgcggtggtgctccagtgcggtgcggactctctgtcgggtgataggttgggttgcttcaacctgtcgatcaggggccacgcagaatgtgtgagattcatgaggtccttcaacgtcccgctgttgctgcttggtggtggtgggtataccataagaaatgttgcgcggtgttggtgctatgagacaggagttgcacttggtcatgagctcactgacaagatgcctccaaatgagtattttgagtactttggtccagattatacacttcatgttgcaccaagtaacatggagaacaaaaacacacgccagcaattggatgatataagatcaagacttcttgataatctttcaaaacttcgacatgctcctagtgtccaatttcaagagcgaccccctgaggctgagctacctgagcaagatgaagaccaagaggatcctgatgaaaggcaccatgctgattctgatgtggaaatggatgatgtcaaacctttggatgactcaggaaggaggagcagtattcagaatgtgagagttaagagagagtctgctgaaacagatgccgcagatcaggtatttttctattaa

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Protein seq

MDASAGGGGNSLPTVGADGAKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLDQMQVLKPHPARDRDLCRFHADDYVAFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHGHDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKYHQRVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGHSKGKYYSLNVPLDDGIDDESYQSLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGHELTDKMPPNEYFEYFGPDYTLHVAPSNMENKNTRQQLDDIRSRLLDNLSKLRHAPSVQFQERPPEAELPEQDEDQEDPDERHHADSDVEMDDVKPLDDSGRRSSIQNVRVKRESAETDAADQVFFY

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Gene Transcript Chromosome Start End Strand Source
OsCMeo_06g0020600 OsCMeo_06g0020600.01 Chr06 22562179 22568079 - NAM
CDS seq

atggacgcctccgccggaggcggggggaactcgctgccgacggtgggggccgacggggccaagcggcgggtgtgctacttctacgacgcggaggtggggaactactactacgggcaggggcacccgatgaagccccaccgcatccggatgacccacgcgctgctcgcccactacggcctcctcgaccagatgcaggtgctcaagccccacccggcgcgcgaccgcgacctctgccgcttccacgccgacgactacgtcgccttcctccgctccgtcacgccggagacccagcaggaccagatccgggcgctcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctctacagcttctgccagacctacgccgggggatccgtcggcggcgccgtcaagctcaaccacggccatgacatcgccatcaactgggccggcggcctccaccacgccaagaagtgcgaggcctccggcttctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaaataccaccagcgtgttctctatgtggatatcgatatccaccatggggatggtgtggaggaggcgttctacacgacggacagggtgatgacggtctcgttccacaagtttggggattatttcccggggaccggggacattcgcgatattgggcactcaaaggggaagtattactctctgaatgtcccgttggatgacggtatcgacgacgagagctaccagtcgttgttcaagccgatcatggggaaggtgatggaggtttttcgccctggcgcggtggtgctccagtgcggtgcggactctctgtcgggtgataggttgggttgcttcaacctgtcgatcaggggccacgcagaatgtgtgagattcatgaggtccttcaacgtcccgctgttgctgcttggtggtggtgggtataccataagaaatgttgcgcggtgttggtgctatgagacaggagttgcacttggtcatgagctcactgacaagatgcctccaaatgagtattttgagtactttggtccagattatacacttcatgttgcaccaagtaacatggagaacaaaaacacacgccagcaattggatgatataagatcaagacttcttgataatctttcaaaacttcgacatgctcctagtgtccaatttcaagagcgaccccctgaggctgagctacctgagcaagatgaagaccaagaggatcctgatgaaaggcaccatgctgattctgatgtggaaatggatgatgtcaaacctttggatgactcaggaaggaggagcagtattcagaatgtgagagttaagagagagtctgctgaaacagatgccgcagatcaggatggtaatagggtcgctgcagagcacaccaagggcacagaacctgcggctgatggagttggttcctcgaaacaaactgttcctaccgatgcaagtgcgatggccatagacgaaccaggctccctgaaagtcgagccagataactcaaacaaattgcaagatcaaccatcggtgcaccagaagtcataa

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Protein seq

MDASAGGGGNSLPTVGADGAKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLDQMQVLKPHPARDRDLCRFHADDYVAFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHGHDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKYHQRVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGHSKGKYYSLNVPLDDGIDDESYQSLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGHELTDKMPPNEYFEYFGPDYTLHVAPSNMENKNTRQQLDDIRSRLLDNLSKLRHAPSVQFQERPPEAELPEQDEDQEDPDERHHADSDVEMDDVKPLDDSGRRSSIQNVRVKRESAETDAADQDGNRVAAEHTKGTEPAADGVGSSKQTVPTDASAMAIDEPGSLKVEPDNSNKLQDQPSVHQKS

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
SE Chr06 22562980 22565426 - OsCMeo_06g0020600.02 OsCMeo_06g0020600.02,OsCMeo_06g0020600.01 All

Expression

Leaf Root Panicle
FPKM 5.958642 36.655769 23.410694

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_06g0583400 RBH 6.309719 6.627637 18.956621
Nipponbare | IRGSP 1.0 | MSU LOC_Os06g38470 RBH 4.171994 4.339273 4.723655
Nipponbare | IRGSP 1.0 | RAP-db Os06g0583400 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_06g0020670 RBH 5.144213 48.523483 20.719198
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_06g0020470 RBH 1.458014 12.080674 10.161352
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0008680 RBH 0.213149 0.000000 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_06g0020380 RBH 0.969796 1.001552 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_06g0020780 RBH 28.147612 43.795013 43.947678
Minghui 63 | MH63RS3 | HZAU OsMH63_06G0361700 RBH 18.529461 39.093895 37.8721065
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_06g0020190 RBH 1.460895 2.121541 3.778645
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_06G0337400 RBH 26.6834525 46.968899 56.8766345
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_06g0020640 RBH 0.309472 0.291137 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_06g0020680 RBH 2.307787 40.448097 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_06g0020290 RBH 26.204432 43.638390 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_06g0020980 RBH 1.289935 2.317423 0.967358
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_06g0020440 RBH 1.232781 19.406281 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_06G020350 RBH 2.266706 8.944427 9.603296
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_06g0020600 RBH 4.274674 61.582783 25.070045
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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