Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_06G014790 | OGI:06040980 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr06:14433973-14437970 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGATAAACAAGTGAAGAACCACAGACCTTCTGATGGTACGGATGGATCAAGGTATGTTGTTCTGTTTCAGTGATTTATTTCAGTATGTGCCGCTGGTTATGTTGTTCTGTTTCAGTGATTTATTTCAGTATGTGCCGCTGGTTTTTTTTCTCTGAATTTCGCCGTGTGAACTTGAGCAATTCTAAATCATCAATTCAGGGAAATTCTTATGGACGAGCGCAACCCTACCATGGACATAGTAGATGGTATTAGTCAATCTGTCCATGATTCACAACCGGATGGTGGTCAGTCAAGGTTGGATCGTAGCTTCCATGAATTTAAAAATCTGTAAATGGTAGCCAGATACTGACACATCTTGATTGTGTTATGAAGCCGTGTAGCAATGGAGGAGGACGTGCCGTCGCGGGTTGGATCACATGATTCAGGGCATGGAATTCCAGAGACAAGGTATGTGCATGGCTAGGTGTCAGCTGAGCATTCACTTTAAAGCAGTATATACTACATAGAAATGTTCAGTATGTGTCACATGAGAAAGTTCAGTATATGCTATCTTCTAGGAAAGTTCAGTATGTATCACATAGAAAAGTTCAGTATGTGCTATATTGCAGAGGAGTTCAGTATGTTGCACAGAAAATTCAGAACATACTATATGCTGTCGTATAACAAAGTTCAGTACATAGCCTCCCATAGAAAAATTCAGTATATATGTGAAAAATTCAGTAAATACTGGTGCGTATCAAAGTTCAGACTACGAATCACTATGGAAAGATTTAGTATACATGTGGAAAATGCAGTATATGCTATCGTCTAGAGAAATTCAGTACGTAACCCATAGAAAAATTCAGTACATACTATCATTCAACATAAATCAGAAAGAACCCCTCCATTTTAAAAAATGAGTATATACAATCATCTAACAAAGTTCAGAACAAAGCTCCCCATATTTTTTTGTTAGTAGTACAACATATATTTTTTTTAAATTTGCAGTAAGTACTGATTATAAATTAGGTTGTTTTTTGTAAACTACATTTTCAGTTAGTAGTAGTATATGCTATTTTTAAATATAGTGTCTCCAATACAGAAATTTGGTCCCTTCACTGGATTGGACAGAAGGAAACCCATATGAAAAAGAAGGAGCTGGGATACCGATGGAAAGGTTTGTATCAGCATGTTACGGATTTTTACGATTTTTTTTGAGCCAGGATATTGGTGGTATTTTCTGAAAACTGATTGTACATTTTCTTTTCAGAATGGTGGTAGATAATGTTGATAGCAGTGCTGTCATACCTCCTGAGTATGCTGATCCTCAAATTCTTACTCCGATGCTGGGACAAAGATTTAAGACTGAGAGGGATGCCTATAATTTTTATAATGTTTATGCTGTTAGTAAAGGATTTGGGATACGACTGGACAAAGATCGCATGAATACTAAAAAGCAGAGAACAATGCGGCAAATATGTTGTTCTCACCAGGTACATACATTATGTAACAATATCTTAGTAGCAGAAATTTACCTAAATAAAGACTTGACGTACTATGTGTTAATTTCGAAATCTTTTATGCAGGGGAGGAACCCAAAAACCAAGAAGCCTTCCGTTCGAATTGGGTGCCCAGCAATGATGAAGATAAATATGTCTAGAGCTGGTAGTGGCTGGTTAGTAACAAAGGTTGTTTCTGCGCACAACCATCCTATGAAAAAAAGTGTAGGAGTTACTAAGAATTATCAGTCGTACAATCAAATAGATGAGGGGACTCGTGGTATTATTGAAGAGATGGTAGACAGTAGTATGAGTCTTACAAATATGTATGGTATGTTGTCTGGGATGCATGGCGGACCTTCCATGGTTCCATTCACGAGAAAAGCTATGGATAGGCTTGCTTATGCAATTAGGCGGGATGAGAGCAGCGATGACATGCAAAAAACACTTGATGTCTTAAAGGATTTGCAAAAAAGGAGCAAGAATTTCTTTTATAGTATACAAGTTGACGAGGCTTGCCGTGTGAAGAACATATTTTGGTCTCATGCTGTGTCCAGATTGAACTTTGAGCATTTTGGTGATGTCATCACATTTGATACTACCTACAAAACAAACAAGTATAATATGCCCTTTGCACCATTTGTTGGTGTAAACAATCACTTTCAGAGCACCTTCTTTGGTTGTGCCCTGCTTAGAGAAGAGACTGAAGAATCATTTACATGGTTATTCAATACATTCAAAGAGTGCATGAATGGGAAGGTTCCTATTGGAATATTAACAGGTATGTGAGTATTTGGCCGAATTTATAATTTGGAATGAATTCGTTATACTTTGCAGATTTTAAGTATATGATGGGTTATTCATTGGATGCTTATTATTGTCCTTAATTTTGCAGACAATTGTCCTTCCATGGCAGCTGCCATTAGAACAGTATTTCCCAATACAATCCATCGTGTGTGCAAGTGGCATGTACTGAAGAAAGCAAAGGAATTTATGGGGAACATATACTCCAAGCGTCATACATTCAAGAAAGCATTTCATAAGGTTCTTACGCAGACACTAACAGAGGAGGAGTTTGTTGCGGCTTGGCACAAACTGATTAGAGATTATAATCTGGAAAAAAGTGTTTACTTGCGTCACATATGGGACATAAGGCGTAAATGGGCATTTGTATATTTTTCCCATAGGTTCTTTGCTGGGATGACTACTACACAGAGAAGTGAGTCTGCAAACCATGTGTTTAAGATGTTTGTGTCACCCTCTAGCTCTATGAATGGCTTTGTTAAGAGGTACGACCGGTTTTTCAATGAGAAGCTGCAAAAAGAGGACTCGGAGGAATTCCAAACCAGTAATGTAAGTATCCACTGTGATAGGTTTGTTGACCTCTTTTTATGGATATGTGTAATCAACATTTGGTGTCGCTTGGTGCAGGACAAGGTTGAAATTAAAACAAGGTCACCGATAGAGATTCACGCATCCCAAGTATATACTAGGGCTGTTTTCCAATTGTTCTCTGAGGAGTTAACCGATAGTCTATCTTACATGGTGAAACCTGGGGAGGACGAAAGCACCGTGCAAGTTGTACGGATGAACTCGCAAGAATCATTCCTTAGGAAGGAATATCAGGTGTCTTGTGATTTGGAAAGAGAGGAATTTTCATGCGTTTGCAAGATGTTTGAGCATAAGGGGATTCTGTGCAGCCACATCTTAAGGGTATTTGTTTCTTCTACTGTCTAAACATTTATTTTCATTGGGTCGTACTATATGTTTGGTAGTGTTTGGCTTTTTGAAGTAATGCATTGGTTTGTCCCTTTAGGTACTTGTTCAGTATGGTTTGTCAAGAATTCCAGAGAGGTATATACTGAAAAGATGGACGAAGGATGCTCGGGATACTATACCACCTCATCTACATGGGTACAAAGATGATGTCGATGCTTCACAATCGAGGAGTTACAGACATGTAATGCTGAATAGGAAGACTGTGGAGGTGGCTAAGATTGCTAACAAAGATGTGCAGACATTTAAGATGGCAATGATAGTCATGAATAAGCTTTTGGAGGACATGAAAAATTAGTTATCTTTGGATGATGGTGACAATAGTAGAGAAGCTCCGAAGCGAGCAGCTAGGCATAAATCAAGGTCTACTGTATTGACTGAAGATGGAAACGAAGATGTTGGTGGAGGTGATGAGGACAGTGAGTATGACGTGCCAAGTGAGGACGAGGGTGGAAATTTGACTGCTGATATACTTCCACCGTTGAAAAAGAGAAGCAGAGGAAGACCTAAGGTGAATAGGTATAAATCGGGTGGTGAGGTTGCCAGCCTGAAAAGAAGAAAAGAAGTAGGGATTGAGAAGAAGAACACAACCAATGAGTGTGAGTCTGTTGAAGAAGAAAACCAAGTCATTGATCATGAGGATGAAGTGCCCTTTCCTCGTAGGTTTTGCCACACATGCCACGAAGCTGGTCATAATTCGCGGACTTGCGGCCGGACATCTACGTACAAGAGAAAACTTTAG
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| CDS seq | ATGGATAAACAAGTGAAGAACCACAGACCTTCTGATGGTACGGATGGATCAAGGGAAATTCTTATGGACGAGCGCAACCCTACCATGGACATAGTAGATGGTATTAGTCAATCTGTCCATGATTCACAACCGGATGGTGGTCAGTCAAGCCGTGTAGCAATGGAGGAGGACGTGCCGTCGCGGGTTGGATCACATGATTCAGGGCATGGAATTCCAGAGACAAGAAATTTGGTCCCTTCACTGGATTGGACAGAAGGAAACCCATATGAAAAAGAAGGAGCTGGGATACCGATGGAAAGAATGGTGGTAGATAATGTTGATAGCAGTGCTGTCATACCTCCTGAGTATGCTGATCCTCAAATTCTTACTCCGATGCTGGGACAAAGATTTAAGACTGAGAGGGATGCCTATAATTTTTATAATGTTTATGCTGTTAGTAAAGGATTTGGGATACGACTGGACAAAGATCGCATGAATACTAAAAAGCAGAGAACAATGCGGCAAATATGTTGTTCTCACCAGGGGAGGAACCCAAAAACCAAGAAGCCTTCCGTTCGAATTGGGTGCCCAGCAATGATGAAGATAAATATGTCTAGAGCTGGTAGTGGCTGGTTAGTAACAAAGGTTGTTTCTGCGCACAACCATCCTATGAAAAAAAGTGTAGGAGTTACTAAGAATTATCAGTCGTACAATCAAATAGATGAGGGGACTCGTGGTATTATTGAAGAGATGGACAAGGTTGAAATTAAAACAAGGTCACCGATAGAGATTCACGCATCCCAAGTATATACTAGGGCTGTTTTCCAATTGTTCTCTGAGGAGTTAACCGATAGTCTATCTTACATGGTGAAACCTGGGGAGGACGAAAGCACCGTGCAAGTTGTACGGATGAACTCGCAAGAATCATTCCTTAGGAAGGAATATCAGGTGTCTTGTGATTTGGAAAGAGAGGAATTTTCATGCGTTTGCAAGATGTTTGAGCATAAGGGGATTCTGTGCAGCCACATCTTAAGGGTACTTGTTCAGTATGGTTTGTCAAGAATTCCAGAGAGGTATATACTGAAAAGATGGACGAAGGATGCTCGGGATACTATACCACCTCATCTACATGGGTACAAAGATGATGTCGATGCTTCACAATCGAGGAGTTACAGACATTTATCTTTGGATGATGGTGACAATAGTAGAGAAGCTCCGAAGCGAGCAGCTAGGCATAAATCAAGGTCTACTGTATTGACTGAAGATGGAAACGAAGATGTTGGTGGAGGTGATGAGGACAGTGAGTATGACGTGCCAAGTGAGGACGAGGGTGGAAATTTGACTGCTGATATACTTCCACCGTTGAAAAAGAGAAGCAGAGGAAGACCTAAGGTGAATAGGTATAAATCGGGTGGTGAGGTTGCCAGCCTGAAAAGAAGAAAAGAAGTAGGGATTGAGAAGAAGAACACAACCAATGAGTGTGAGTCTGTTGAAGAAGAAAACCAAGTCATTGATCATGAGGATGAAGTGCCCTTTCCTCGTAGGTTTTGCCACACATGCCACGAAGCTGGTCATAATTCGCGGACTTGCGGCCGGACATCTACGTACAAGAGAAAACTTTAG
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| Protein seq | MDKQVKNHRPSDGTDGSREILMDERNPTMDIVDGISQSVHDSQPDGGQSSRVAMEEDVPSRVGSHDSGHGIPETRNLVPSLDWTEGNPYEKEGAGIPMERMVVDNVDSSAVIPPEYADPQILTPMLGQRFKTERDAYNFYNVYAVSKGFGIRLDKDRMNTKKQRTMRQICCSHQGRNPKTKKPSVRIGCPAMMKINMSRAGSGWLVTKVVSAHNHPMKKSVGVTKNYQSYNQIDEGTRGIIEEMDKVEIKTRSPIEIHASQVYTRAVFQLFSEELTDSLSYMVKPGEDESTVQVVRMNSQESFLRKEYQVSCDLEREEFSCVCKMFEHKGILCSHILRVLVQYGLSRIPERYILKRWTKDARDTIPPHLHGYKDDVDASQSRSYRHLSLDDGDNSREAPKRAARHKSRSTVLTEDGNEDVGGGDEDSEYDVPSEDEGGNLTADILPPLKKRSRGRPKVNRYKSGGEVASLKRRKEVGIEKKNTTNECESVEEENQVIDHEDEVPFPRRFCHTCHEAGHNSRTCGRTSTYKRKL |
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| Function | Protein FAR1-RELATED SEQUENCE 3 [UniProtKB/Swiss-Prot:Q9ZVC9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_06G014790 | OsN22_06G014790_01 | Chr06 | 14433973 | 14437970 | + | NAM | ||
| CDS seq | ATGGATAAACAAGTGAAGAACCACAGACCTTCTGATGGTACGGATGGATCAAGGGAAATTCTTATGGACGAGCGCAACCCTACCATGGACATAGTAGATGGTATTAGTCAATCTGTCCATGATTCACAACCGGATGGTGGTCAGTCAAGCCGTGTAGCAATGGAGGAGGACGTGCCGTCGCGGGTTGGATCACATGATTCAGGGCATGGAATTCCAGAGACAAGAAATTTGGTCCCTTCACTGGATTGGACAGAAGGAAACCCATATGAAAAAGAAGGAGCTGGGATACCGATGGAAAGAATGGTGGTAGATAATGTTGATAGCAGTGCTGTCATACCTCCTGAGTATGCTGATCCTCAAATTCTTACTCCGATGCTGGGACAAAGATTTAAGACTGAGAGGGATGCCTATAATTTTTATAATGTTTATGCTGTTAGTAAAGGATTTGGGATACGACTGGACAAAGATCGCATGAATACTAAAAAGCAGAGAACAATGCGGCAAATATGTTGTTCTCACCAGGGGAGGAACCCAAAAACCAAGAAGCCTTCCGTTCGAATTGGGTGCCCAGCAATGATGAAGATAAATATGTCTAGAGCTGGTAGTGGCTGGTTAGTAACAAAGGTTGTTTCTGCGCACAACCATCCTATGAAAAAAAGTGTAGGAGTTACTAAGAATTATCAGTCGTACAATCAAATAGATGAGGGGACTCGTGGTATTATTGAAGAGATGGACAAGGTTGAAATTAAAACAAGGTCACCGATAGAGATTCACGCATCCCAAGTATATACTAGGGCTGTTTTCCAATTGTTCTCTGAGGAGTTAACCGATAGTCTATCTTACATGGTGAAACCTGGGGAGGACGAAAGCACCGTGCAAGTTGTACGGATGAACTCGCAAGAATCATTCCTTAGGAAGGAATATCAGGTGTCTTGTGATTTGGAAAGAGAGGAATTTTCATGCGTTTGCAAGATGTTTGAGCATAAGGGGATTCTGTGCAGCCACATCTTAAGGGTACTTGTTCAGTATGGTTTGTCAAGAATTCCAGAGAGGTATATACTGAAAAGATGGACGAAGGATGCTCGGGATACTATACCACCTCATCTACATGGGTACAAAGATGATGTCGATGCTTCACAATCGAGGAGTTACAGACATTTATCTTTGGATGATGGTGACAATAGTAGAGAAGCTCCGAAGCGAGCAGCTAGGCATAAATCAAGGTCTACTGTATTGACTGAAGATGGAAACGAAGATGTTGGTGGAGGTGATGAGGACAGTGAGTATGACGTGCCAAGTGAGGACGAGGGTGGAAATTTGACTGCTGATATACTTCCACCGTTGAAAAAGAGAAGCAGAGGAAGACCTAAGGTGAATAGGTATAAATCGGGTGGTGAGGTTGCCAGCCTGAAAAGAAGAAAAGAAGTAGGGATTGAGAAGAAGAACACAACCAATGAGTGTGAGTCTGTTGAAGAAGAAAACCAAGTCATTGATCATGAGGATGAAGTGCCCTTTCCTCGTAGGTTTTGCCACACATGCCACGAAGCTGGTCATAATTCGCGGACTTGCGGCCGGACATCTACGTACAAGAGAAAACTTTAG
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| Protein seq | MDKQVKNHRPSDGTDGSREILMDERNPTMDIVDGISQSVHDSQPDGGQSSRVAMEEDVPSRVGSHDSGHGIPETRNLVPSLDWTEGNPYEKEGAGIPMERMVVDNVDSSAVIPPEYADPQILTPMLGQRFKTERDAYNFYNVYAVSKGFGIRLDKDRMNTKKQRTMRQICCSHQGRNPKTKKPSVRIGCPAMMKINMSRAGSGWLVTKVVSAHNHPMKKSVGVTKNYQSYNQIDEGTRGIIEEMDKVEIKTRSPIEIHASQVYTRAVFQLFSEELTDSLSYMVKPGEDESTVQVVRMNSQESFLRKEYQVSCDLEREEFSCVCKMFEHKGILCSHILRVLVQYGLSRIPERYILKRWTKDARDTIPPHLHGYKDDVDASQSRSYRHLSLDDGDNSREAPKRAARHKSRSTVLTEDGNEDVGGGDEDSEYDVPSEDEGGNLTADILPPLKKRSRGRPKVNRYKSGGEVASLKRRKEVGIEKKNTTNECESVEEENQVIDHEDEVPFPRRFCHTCHEAGHNSRTCGRTSTYKRKL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0475650 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g37540 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0475650 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0019090 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026400 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0018920 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0018920 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0010580 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0238700 | SBH | 0.2547685 | 1.821173 | 1.2023205 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0032700 | SBH | 0.053046 | 0.000000 | 0.272941 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0158100 | RBH | 0 | 0 | 0.438426 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0009490 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0009060 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0009120 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0010630 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0017230 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G003830 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0017430 | SBH | 0.0 | 0.0 | 0.0 |
