Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_06g0026400 | OGI:06072130 | 14/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr06:29212975-29216589 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagcagaaacaattagccatgttctgctccaataggatgcttccaaagactacaacttcaccacatactctgaggcacaacagaaaataggaaaatacaaaactagtgttcgcaaatttcctacaatgtttgccaaatgtaaatattcaaaatgaactacatgttctgctgacgaaatttaataataataaaatttccattttatgctaaacgaaatgctgacatcaaccctgcagaacattgaacagaataattacactcacttcttcctctcataactagatttccgaccacatgtactcttatagtggccatgaccaccacattgcttgtagtacctaatctgcttcgttgactctttttttcctttggcgtgattcttcgactcgtccttggaggtactctcactagccttcttcttctttgctttgctagatgtctctcccttcgacatcagtctggtactcctcggtcgtccacgacttcttctaacctcaggagggagtatgtcttcttcgttgacatcagtcatgtccacatcaactgaatcctcaccagcagaaacatcctgtccaatgccgtcctcatcggctacacaaaattcatcagacattccatgctccgagtcagaactgtctacactatcatccaattgcacaccagtaggtttcttcccaattgttctatctccgcagtgaatttccttgttgtttacaacttgcgaagtacacatgacctgaagttctccaatcagctttgtcaacacttccactgtcttctcatatgtttctgaactagtaccaccaagtctaaccatatcaagtgcagacttgtgcaggagggtgttccgataagttctcgatgatgccgcctccttatccttcaagtacgactcctccaagtgctttgggattgaatctctagcatcttttgtccacctcttcaggatatacttcttcggtatttccgtgaaaccatactgtaccataacctgcaaaaacactatgcattaacacacaaaaacacaacaacgttatgagaactgcttaatattcaaacttactctgataatatgggagcatataattcccaagtgttcaaaaatcttgcatccacatgacagatcttgttcagtcaggtcaacctgaaccttaaattctttgctgccccaactttgcaaggtgtcatcacctatatggactagctgcagaacatgctgatccgaagtatgataaaccataaatgaaaagcttagcttgaactgttccttgaacctggaaaatgcacccctagtgtacacccgagaagcatgtttctcaatgggcgagctagttaatgtggaaaccttctcctacagttcacgagaaatgacaagcatattataacatgttcagcagaaagtaccatacaccgatatatcatacggaaataattaaaaaaaaaacatacattgtatgtatcatgctcctcagcgtcttccgcttcaatcctatcattgtagaaattctcatacctctttgcaaatccatgtagcgaagaggatggttttacatacttcttcagaacatgattcatgctctcacttctttgtgtggttgacatcctagcaaaaaagaattccctgaagtaagctggagcccattttttcttcatgtcccacatcctgcgcaaatacacgctagactcgagattgtactgctccattaaatctgaccatgccttctcaaactctgcctctgtttggggttcatttaacacccggtggaactcctgtttgaaactgcttcttttactgtaaatgttccccaagttctccttagcattcttcagaacatgccatttgcaaactctatgaatagtttcaggccaaaccgctttgatcgccacctccatttgatgacagttatctaaaaaagaagttcacaaccattcgagattaaaaacagaagacatatcattaaacacaccactgatccatccaaataaacatatacctgttaaaattgctgcaggcctcttcccatgcattgcatcagtaaatgtttggaaaagccacttgaatgcttcaattgtctcctccctcaacaaagcgcaaccaaaaattgctgtttgaaaatggttatttacaccgacaaaaatcccaaatggcatgttgtacctattagtctgatatgtagtatcaaaagtgattgcatccccaaaatggtcaaaacttaatctggaaagagaatgacaccaaaatatatttttaatccttgaagcaccatcaatctgtatggtgtaaaagaaattcttactacggcattgcatttccctaaaaaaattcagtgtcttctgcacatcattgctacactcatcccttctgatggcatacgccattcttgtcacagccctccttgtaaagggggttaaggacggcccaccgtgcatacctgaaagtaatccatacatagctgtaggtgtcatcccattatctaccatttcctttatgttcctctttgtcccttcatcaatgaaattatgagaccggaagtgtttagtatgctgcaggtcccgtttcatttcatggttgtgctcactaacgaatgcagaaactctccacttttgactttcagaagaacgatttaacctgaccatagccttgcagcctatcctggtcggcggaccagtgacggaattatctctaccctgcataaattacaggaacaccttactacgtaaaacctatgaaatgatgatcctacgcatcacactatagaaccttgccaatcttacgagaatacgaaaccatggttttcaaaaaaaaaaagaatacactaaagatttttacctcgcgaatgcagcagaactcttgcatggacttcacgcctccatctttgtatctgttcttggatctccttataccaaaaccagtgaacctagcgtacagattgtagaacgcatagccatcagagtcctcattgaaggtctgcccaattttcggcaacagaatggctgggtcagagagtgaaataggcagcagatcactatcttcctccccctcaaccacgatcctaggatcaaaaaaatgagaattcagctaacaatgcagaaagggaaattgtacactacaatcacactgacataaaaaatacctttccaacggaactacgtcaatgggttgtccactatgatcctcgccaccttggatctcctttccaccggagggtttctgctccatcaaaaacctgcagaacaaaatcttcttcctcacaaatccgaaagataattgtggtcctcattttctgtcctccatcaccgtcaacttaaatagagtatcaatacagcaacctccacactaactactctcctggtcgctcggtcgtgcatgcgtgcgggtaacaaaccatgcatgcagaacattcaaaatgactcaccatgcagaacacagcgcagtgatccgaattttcaaaaaaaaatattcaagtttctgcatcggtggattaatggatcttttctcacaatccgttagtgagttgaagcccgaaaccctgatgtgagttggacaggtatccgatggttacaataggagtagctactcctgggagtaggtggaacagcaccgctatgttttt
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| CDS seq | atggagcagaaaccctccggtggaaaggagatccaaggtggcgaggatcatagtggacaacccattgacgtagttccgttggaaaggatcgtggttgagggggaggaagatagtgatctgctgcctatttcactctctgacccagccattctgttgccgaaaattgggcagaccttcaatgaggactctgatggctatgcgttctacaatctgtacgctaggttcactggttttggtataaggagatccaagaacagatacaaagatggaggcgtgaagtccatgcaagagttctgctgcattcgcgagggtagagataattccgtcactggtccgccgaccaggataggctgcaaggctatggtcaggttaaatcgttcttctgaaagtcaaaagtggagagtttctgcattcgttagtgagcacaaccatgaaatgaaacgggacctgcagcatactaaacacttccggtctcataatttcattgatgaagggacaaagaggaacataaaggaaatggtagataatgggatgacacctacagctatgtatgcacggtgggccgtccttaaccccctttacaaggagggctgtgacaagaatggcgagaaggtttccacattaactagctcgcccattgagaaacatgcttctcgggtgtacactaggggtgcattttccaggttcaaggaacagttcaagctaagcttttcatttatggtttatcatacttcggatcagcatgttctgcagctagtccatataggtgatgacaccttgcaaagttggggcagcaaagaatttaaggttcaggttgacctgactgaacaagatctgtcatgtggatgcaagatttttgaacacttgggaattatatgctcccatattatcagagttatggtacagtatggtttcacggaaataccgaagaagtatatcctgaagaggtggacaaaagatgctagagattcaatcccaaagcacttggaggagtcgtacttgaaggataaggaggcggcatcatcgagaacttatcggaacaccctcctgcacaagtctgcacttgatatggttagacttggtggtactagttcagaaacatatgagaagacagtggaagtgttgacaaagctgattggagaacttcaggtcatgtgtacttcgcaagttgtaaacaacaaggaaattcactgcggagatagaacaattgggaagaaacctactggtgtgcaattggatgatagtgtagacagttctgactcggagcatggaatgtctgatgaattttgtgtagccgatgaggacggcattggacaggatgtttctgctggtgaggattcagttgatgtggacatgactgatgtcaacgaagaagacatactccctcctgaggttagaagaagtcgtggacgaccgaggagtaccagactgatgtcgaagggagagacatctagcaaagcaaagaagaagaaggctagtgagagtacctccaaggacgagtcgaagaatcacgccaaaggaaaaaaagagtcaacgaagcagattaggtactacaagcaatgtggtggtcatggccactataagagtacatgtggtcggaaatctagttatgagaggaagaaagtatgtggtgaagttgtagtctttggaagcatcctattggagcagaacatggctaattgtttctgctag
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| Protein seq | MEQKPSGGKEIQGGEDHSGQPIDVVPLERIVVEGEEDSDLLPISLSDPAILLPKIGQTFNEDSDGYAFYNLYARFTGFGIRRSKNRYKDGGVKSMQEFCCIREGRDNSVTGPPTRIGCKAMVRLNRSSESQKWRVSAFVSEHNHEMKRDLQHTKHFRSHNFIDEGTKRNIKEMVDNGMTPTAMYARWAVLNPLYKEGCDKNGEKVSTLTSSPIEKHASRVYTRGAFSRFKEQFKLSFSFMVYHTSDQHVLQLVHIGDDTLQSWGSKEFKVQVDLTEQDLSCGCKIFEHLGIICSHIIRVMVQYGFTEIPKKYILKRWTKDARDSIPKHLEESYLKDKEAASSRTYRNTLLHKSALDMVRLGGTSSETYEKTVEVLTKLIGELQVMCTSQVVNNKEIHCGDRTIGKKPTGVQLDDSVDSSDSEHGMSDEFCVADEDGIGQDVSAGEDSVDVDMTDVNEEDILPPEVRRSRGRPRSTRLMSKGETSSKAKKKKASESTSKDESKNHAKGKKESTKQIRYYKQCGGHGHYKSTCGRKSSYERKKVCGEVVVFGSILLEQNMANCFC |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0026400 | OsKeNa_06g0026400.01 | Chr06 | 29212975 | 29216589 | - | NAM | ||
| CDS seq | atggagcagaaaccctccggtggaaaggagatccaaggtggcgaggatcatagtggacaacccattgacgtagttccgttggaaaggatcgtggttgagggggaggaagatagtgatctgctgcctatttcactctctgacccagccattctgttgccgaaaattgggcagaccttcaatgaggactctgatggctatgcgttctacaatctgtacgctaggttcactggttttggtataaggagatccaagaacagatacaaagatggaggcgtgaagtccatgcaagagttctgctgcattcgcgagggtagagataattccgtcactggtccgccgaccaggataggctgcaaggctatggtcaggttaaatcgttcttctgaaagtcaaaagtggagagtttctgcattcgttagtgagcacaaccatgaaatgaaacgggacctgcagcatactaaacacttccggtctcataatttcattgatgaagggacaaagaggaacataaaggaaatggtagataatgggatgacacctacagctatgtatgcacggtgggccgtccttaaccccctttacaaggagggctgtgacaagaatggcgagaaggtttccacattaactagctcgcccattgagaaacatgcttctcgggtgtacactaggggtgcattttccaggttcaaggaacagttcaagctaagcttttcatttatggtttatcatacttcggatcagcatgttctgcagctagtccatataggtgatgacaccttgcaaagttggggcagcaaagaatttaaggttcaggttgacctgactgaacaagatctgtcatgtggatgcaagatttttgaacacttgggaattatatgctcccatattatcagagttatggtacagtatggtttcacggaaataccgaagaagtatatcctgaagaggtggacaaaagatgctagagattcaatcccaaagcacttggaggagtcgtacttgaaggataaggaggcggcatcatcgagaacttatcggaacaccctcctgcacaagtctgcacttgatatggttagacttggtggtactagttcagaaacatatgagaagacagtggaagtgttgacaaagctgattggagaacttcaggtcatgtgtacttcgcaagttgtaaacaacaaggaaattcactgcggagatagaacaattgggaagaaacctactggtgtgcaattggatgatagtgtagacagttctgactcggagcatggaatgtctgatgaattttgtgtagccgatgaggacggcattggacaggatgtttctgctggtgaggattcagttgatgtggacatgactgatgtcaacgaagaagacatactccctcctgaggttagaagaagtcgtggacgaccgaggagtaccagactgatgtcgaagggagagacatctagcaaagcaaagaagaagaaggctagtgagagtacctccaaggacgagtcgaagaatcacgccaaaggaaaaaaagagtcaacgaagcagattaggtactacaagcaatgtggtggtcatggccactataagagtacatgtggtcggaaatctagttatgagaggaagaaagtatgtggtgaagttgtagtctttggaagcatcctattggagcagaacatggctaattgtttctgctag
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| Protein seq | MEQKPSGGKEIQGGEDHSGQPIDVVPLERIVVEGEEDSDLLPISLSDPAILLPKIGQTFNEDSDGYAFYNLYARFTGFGIRRSKNRYKDGGVKSMQEFCCIREGRDNSVTGPPTRIGCKAMVRLNRSSESQKWRVSAFVSEHNHEMKRDLQHTKHFRSHNFIDEGTKRNIKEMVDNGMTPTAMYARWAVLNPLYKEGCDKNGEKVSTLTSSPIEKHASRVYTRGAFSRFKEQFKLSFSFMVYHTSDQHVLQLVHIGDDTLQSWGSKEFKVQVDLTEQDLSCGCKIFEHLGIICSHIIRVMVQYGFTEIPKKYILKRWTKDARDSIPKHLEESYLKDKEAASSRTYRNTLLHKSALDMVRLGGTSSETYEKTVEVLTKLIGELQVMCTSQVVNNKEIHCGDRTIGKKPTGVQLDDSVDSSDSEHGMSDEFCVADEDGIGQDVSAGEDSVDVDMTDVNEEDILPPEVRRSRGRPRSTRLMSKGETSSKAKKKKASESTSKDESKNHAKGKKESTKQIRYYKQCGGHGHYKSTCGRKSSYERKKVCGEVVVFGSILLEQNMANCFC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0597800 | SBH | 0.999009 | 1.999418 | 1.365252 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g42520 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0597800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0017600 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0020430 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0015620 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0015190 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0010580 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0472100 | SBH | 3.2818215 | 4.3943135 | 8.4960155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025070 | SBH | 0.0 | 0.0 | 0.096441 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0352000 | SBH | 4.3751825 | 4.1850795 | 11.5239815 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0017450 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0020400 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025420 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025320 | SBH | 0.0 | 0.0 | 0.091510 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0017230 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G014790 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0017430 | SBH | 0.0 | 0.0 | 0.0 |
