Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsN22_06G009880		OGI:06022200 \| 16/16			N22 \| OsN22RS2 \| Gramene(+IsoSeq)			Chr06:8053934-8058463		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		NKT5, OsNKT5
DNA seq		ATGGCCGCTAGAAGCGAGCTTCTCCGGCCGGCATTTGGTGAAGCATCTCCTTCGCTAGGACGGTTTGTCATCAACCCTCACAGCTGCAGCTACAGGTGGTGGCACATGTTCCTGATCATGCTGGTGTTGTACTCGGCATGGGCATCGCCATTCGAGCTGTCCATGGAGAAGACAGCTTCCATTGCTCTTGTTGTCACAGACCTGGTGGTCGATGTCTTCTTCGCCATTGACATTGCCTTATCCTTCTTCGTCGCATACCGTGACACCTCCACCGGCCTCCTCATAACTGACCGCAGGAAGATCACAATGAGGTACCTGAAACGGCCGTGTTTCGCTCTAGATGTGGCCTCGACGATTCCTTTACAAATAATCTACCAGCTTGTGACTGGCAAAAGACAAGGACTGTGGGGGCTCCTCAATCTTCTCCGTCTTTGGCGACTACGGCGCGTCAACAAGCTCTTTGCGAGGGTGGAGAAAGACATCAGATTCAACTATTTGTGGACCAGGCTTATCAAGCTCCTCTGTGTGACACTGTTTGCGCTGCATTTTGCCGCTTGCATCTACCTGTGGATGGCATTCAACTACAAGATCAAGGAACTTACATGGATAGGTAGCCAGATCCATAGCTTTGAGGACCGAAGCGTGTGGTTTTGCTACACCTGTGCAGTGTACTGGTCCATCACCACGCTTGCCACGGTCGGCTACGGTGACCTGCATGCCACCAACATTGGCGAGATGCTTTTCAGCATAGCCTTCATGCTTTTCAACATGGGCCTCACATCCTACATCATCGGCAACATCACTAACCTCGTTGTCCGTGAAACCTCCAACACCTTCAAGATGAGGGACATGGTGCAGCGGGTGTCGGAGTTCGGGAGCATGAACCGGTTGCCAGAGGCGATGAGGGAGCAGATGTTGGCCAGCGTGCAGCTCAGGTTCAGGACAGATGAGCAGCTGCAGCAGGAGTTGTTGTCAGAGCTGCCCAAGGCTGTGCGGTCGAGCGTCATGAAGCACATGTTCAAGAGTGCTATCGAGAGCTGCTACCTATTCCAGGGAGTCTCCGACAGCCTCATTGTGCAGCTGGTCGCGGAGATGAAAGCAGAATTCTTCCCCCCCAAGGCTAATGTTATCCTGGAGAATGAGACCTCGACGGACTGTTATATCATCATCTCTGGCGAAGTGGAGGCATTGACAACCCTTGCAGATGGGACAGAGAAGCATGTGAAGAGAATAGGACCTCGGGGCATGGCAGGGGAAATCGGGGTGATGTTCAGCATTCCGCAGCCATTCACCATCCGGAGCATGAGCCTCACCCATGTTGTCCGCATAAGCCATATCCATCTGCTCCAGGCTGTCCGGCCTAACACCGCAGATGGGTACATCGTGTTCTCCAATTTTATTCAGTACCTTGAGTCTCTGAAGGTGCAAACAAAGGATGTGGCTTTTGTCAGCGATCATCTTTGGAATGGAAACTCAATGGTTTTGGGAAGGGCAACCGAGGTTGCTGTAGATGAATCAAAAGAGGCCGCTCACAAAATGTTACCGTGCAAAGAACCCAAACGGGTTGTTATTCATGAGCAACTTCCCAACGCGACTAGCACAACACTCCATCCTTCGCCTGGGAAGCTCGTCTTACTCCCAGATTCGATGCAAGAACTGATGAAACTTTCAGAAAAGAAATTTGGGAAGGCCGTGAGAGGGATCCTCACTGTGGAAGGAGCCGAGGTCGAGGACATTGAAGTGATAAGAGATGGCGATCACCTGTTCTTTAGTTAGTAGGATATGCCATATGCTATGGCAGATTGTAAATGTATATGATATGAGCATTTATATATATCCAAAAAGATAATATTAATGGCAAATCGCTGCACTAGGACAAACTTAATGATATAAAATAGGTTTTCTCAAATCTTATTAAGAGTGCATCCGTATATACATAATATTCATATAAACCAATATTTAAATCATAATGATTGAAGTCAGGCAACTATAACTCCACTACCATACACCAGTGCTTTTCCAAATATGGCATTTTGTAAGTACACGAACAATACCTATGATGCAATACAATGTATTTGGGATAACTTCATTTCCCAATTACTTTATACAGTACTCCTAAATGATAGGCTCCGGCAAACTGTACTTTGTGAAGATGCCCTCTCTTCCTCCAACTTGACGAACACACTACCATCGTATATACCTCTCACACTATCCTTGTGAAAATATCCATTCTTATCACTTGCAAGACCATAAATTAGCCCCCACTCCTGTATAGGTGCAGCCCTGTGTTTTCAAGGAAAAGGTGTAATTAAACTTAAGTAATCACAGGTAACCATTTTTGTTAGAAACTTTAATTTTGTTTTAATGAAAACCAAGAACTTATAGCATCAACTAAGAGCATGCATTTTCTTTTTCATTTGATATGGATAACGGCTTAAAAGGATGTTTTTAGAATGGAAGATCTATATATTAAGACAACAATCCTCCTTTCATGTTCAACTTCAAAACCAGTAGAATTAACATCCTCAATTGTATTCTATTATGGTTTTGGAACAGATAGATAAGGGTTTCATTTACATATCTAAAGGGGTATTTGGTTGCCAACCACAGTTTGACCACATTCTGTTTGGTTGTAGCCACAATTATGGTAAGATTCTTTTCTAATAAACTAGGTCTCACATGTCATTGACTCAGAGAAGTGTGGTGATGCTCCCTTAGATTTGATAAGGTGTGGCCAATAATGTGATCGCCTCAACTTAGGCAAGTGGTAATATTTGTTAGCAAATGGTGATAAAGTATGGCTAAGAAACAAACACACCGGGTCCCGTTCTTTTCTTCAACAAGAGTTGGATGAAAATTAAGATTTTTGTGGCACGCTTTTCAAACTGCTAAGCAGTGCGTTTCGTGCGAAAACTTTCTATATGAAAGTTATTCTAAAATATCATATTAATCTAGTTTTCAAGTTTGTAATAATTAAAACTCAATCAATCATACGTTAATACCATCTCGTTTTGCGTAAAAAAATTAATCTTCATCTTCATCTTTAGAAGAAATGAACACCATCTAAGTGTCATTCACTTTCCTACTTTTCGCAGCATATACCTATGTTGGTGTTGGTGTAGAGGCCAGGTTTTACCTATTATTTTAAAAAATAAATCCACTTTCCTACTAGGAAACCACATCATTGAAAATCACCACTATGACAACCAAAACATGGTGATTGAAAGTTTAAGGTAAAAAGATATACTTTGAATACAGTTCAATGGTCAAAAATGAACTTATAGTTGCCCCAAGAACGTAATTGACAGTTTTTTTTTGTGTGGGGAGTAATTGATAGTAACTGACCAAACATATTAAGAAAATTACCATGATTGTGGGTCATCTGGATCTCGATTTGCTAGAATCATCTCTTTGACCTCCAAGGATGTTAATGCATCTGGTCTATTTTTTGCGTGTTTCGAGAAAATTTCCTCAAACTTTGCAGGAACAAACCTGAAAATTATCATGTTTAATATACATATATAGATCCAAACAAAGTGTAGAAAACTTCAAAAAGAGCATGCAATTAATTCTAAAGACCAGGCCTAAATAGGCCTCCCGCATAATGAATATGTGCAAATAAGATGCAATATAATTATTAAAATTAAAACAAATTGATACTTATGAAATTTGAGTCCAAAAATAATTGAGTTTTGCATGGTTTTATGAGAAGAAAGAAGAGATAATTTGAACCATAGATATATTATTGAAATGATAGAAATAATTGAGGTGATGTGGCTTAATGAGAGAAGAGAAAAATAACATTAATTACACTTAGTGGGGATGAACTATATACATATAGGATTACACTCGAATAAATATAGGATGATGCCATGACCATTTTGATTTAAGGAAAAATAATAGTGTGTTACTATTATGACCTCTGGATTAATTGCAACACATACCGTACTAGAAAAGAGTGTGTGGGAGGAATTTTTGCCAAGGCATAACTTAATTAATCATGTATAGTATTACTAATGTATGTAAAGTGGAATAAAATATGCATCTAAAAGTTGTATTTCCTATTAAACAAAAGATAGAGTATATCAAGCAAATGTTCAAAACTCACTAAGTTCTTTTGTATGCATGTACTCCTAAAGCATTTAAACTAAAAATATGTAATTATCTTGCTATTTAGATACGTATGCATCACATATTATTGTTAATATGCTTGACATTAATTATATGATATAATGTGATATCTTCCAACACTTATGTAAGATATGTATATATAGGCATGTGGTTGGTGTTACCTTCCTTTACCATCTAGTGCACCTGTGTCACTCCCGTGCATTCCTTTATAGATGTTCTTTATGTATATCGACAAGTGAGGTAATGGTGCGTCCTTCTGCACATTTGAATGCGGAAACAATACCTGGTCAATTATTTCCTTGTGTGTACAATAAATTAAATAGCATATCTAGTTAGTCTATTTTGGACCAAATTCATAATAAACATGTCATTATTTTTATATGATTTGTTTAGAATTAG More
CDS seq		ATGGCCGCTAGAAGCGAGCTTCTCCGGCCGGCATTTGGTGAAGCATCTCCTTCGCTAGGACGGTTTGTCATCAACCCTCACAGCTGCAGCTACAGGTGGTGGCACATGTTCCTGATCATGCTGGTGTTGTACTCGGCATGGGCATCGCCATTCGAGCTGTCCATGGAGAAGACAGCTTCCATTGCTCTTGTTGTCACAGACCTGGTGGTCGATGTCTTCTTCGCCATTGACATTGCCTTATCCTTCTTCGTCGCATACCGTGACACCTCCACCGGCCTCCTCATAACTGACCGCAGGAAGATCACAATGAGGTACCTGAAACGGCCGTGTTTCGCTCTAGATGTGGCCTCGACGATTCCTTTACAAATAATCTACCAGCTTGTGACTGGCAAAAGACAAGGACTGTGGGGGCTCCTCAATCTTCTCCGTCTTTGGCGACTACGGCGCGTCAACAAGCTCTTTGCGAGGGTGGAGAAAGACATCAGATTCAACTATTTGTGGACCAGGCTTATCAAGCTCCTCTGTGTGACACTGTTTGCGCTGCATTTTGCCGCTTGCATCTACCTGTGGATGGCATTCAACTACAAGATCAAGGAACTTACATGGATAGGTAGCCAGATCCATAGCTTTGAGGACCGAAGCGTGTGGTTTTGCTACACCTGTGCAGTGTACTGGTCCATCACCACGCTTGCCACGGTCGGCTACGGTGACCTGCATGCCACCAACATTGGCGAGATGCTTTTCAGCATAGCCTTCATGCTTTTCAACATGGGCCTCACATCCTACATCATCGGCAACATCACTAACCTCGTTGTCCGTGAAACCTCCAACACCTTCAAGATGAGGGACATGGTGCAGCGGGTGTCGGAGTTCGGGAGCATGAACCGGTTGCCAGAGGCGATGAGGGAGCAGATGTTGGCCAGCGTGCAGCTCAGGTTCAGGACAGATGAGCAGCTGCAGCAGGAGTTGTTGTCAGAGCTGCCCAAGGCTGTGCGGTCGAGCGTCATGAAGCACATGTTCAAGAGTGCTATCGAGAGCTGCTACCTATTCCAGGGAGTCTCCGACAGCCTCATTGTGCAGCTGGTCGCGGAGATGAAAGCAGAATTCTTCCCCCCCAAGGCTAATGTTATCCTGGAGAATGAGACCTCGACGGACTGTTATATCATCATCTCTGGCGAAGTGGAGGCATTGACAACCCTTGCAGATGGGACAGAGAAGCATGTGAAGAGAATAGGACCTCGGGGCATGGCAGGGGAAATCGGGGTGATGTTCAGCATTCCGCAGCCATTCACCATCCGGAGCATGAGCCTCACCCATGTTGTCCGCATAAGCCATATCCATCTGCTCCAGGCTGTCCGGCCTAACACCGCAGATGGGTACATCGTGTTCTCCAATTTTATTCAGTACCTTGAGTCTCTGAAGGTGCAAACAAAGGATGTGGCTTTTGTCAGCGATCATCTTTGGAATGGAAACTCAATGGTTTTGGGAAGGGCAACCGAGGTTGCTGTAGATGAATCAAAAGAGGCCGCTCACAAAATGTTACCGTGCAAAGAACCCAAACGGGTTGTTATTCATGAGCAACTTCCCAACGCGACTAGCACAACACTCCATCCTTCGCCTGGGAAGCTCGTCTTACTCCCAGATTCGATGCAAGAACTGATGAAACTTTCAGAAAAGAAATTTGGGAAGGCCGTGAGAGGGATCCTCACTGTGGAAGGAGCCGAGAATTAG More
Protein seq		MAARSELLRPAFGEASPSLGRFVINPHSCSYRWWHMFLIMLVLYSAWASPFELSMEKTASIALVVTDLVVDVFFAIDIALSFFVAYRDTSTGLLITDRRKITMRYLKRPCFALDVASTIPLQIIYQLVTGKRQGLWGLLNLLRLWRLRRVNKLFARVEKDIRFNYLWTRLIKLLCVTLFALHFAACIYLWMAFNYKIKELTWIGSQIHSFEDRSVWFCYTCAVYWSITTLATVGYGDLHATNIGEMLFSIAFMLFNMGLTSYIIGNITNLVVRETSNTFKMRDMVQRVSEFGSMNRLPEAMREQMLASVQLRFRTDEQLQQELLSELPKAVRSSVMKHMFKSAIESCYLFQGVSDSLIVQLVAEMKAEFFPPKANVILENETSTDCYIIISGEVEALTTLADGTEKHVKRIGPRGMAGEIGVMFSIPQPFTIRSMSLTHVVRISHIHLLQAVRPNTADGYIVFSNFIQYLESLKVQTKDVAFVSDHLWNGNSMVLGRATEVAVDESKEAAHKMLPCKEPKRVVIHEQLPNATSTTLHPSPGKLVLLPDSMQELMKLSEKKFGKAVRGILTVEGAEN
Function		Potassium channel KAT4 [UniProtKB/Swiss-Prot:Q652U9]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsN22_06G009880	OsN22_06G009880_01	Chr06	8053934	8058463	+	NAM
CDS seq	ATGGCCGCTAGAAGCGAGCTTCTCCGGCCGGCATTTGGTGAAGCATCTCCTTCGCTAGGACGGTTTGTCATCAACCCTCACAGCTGCAGCTACAGGTGGTGGCACATGTTCCTGATCATGCTGGTGTTGTACTCGGCATGGGCATCGCCATTCGAGCTGTCCATGGAGAAGACAGCTTCCATTGCTCTTGTTGTCACAGACCTGGTGGTCGATGTCTTCTTCGCCATTGACATTGCCTTATCCTTCTTCGTCGCATACCGTGACACCTCCACCGGCCTCCTCATAACTGACCGCAGGAAGATCACAATGAGGTACCTGAAACGGCCGTGTTTCGCTCTAGATGTGGCCTCGACGATTCCTTTACAAATAATCTACCAGCTTGTGACTGGCAAAAGACAAGGACTGTGGGGGCTCCTCAATCTTCTCCGTCTTTGGCGACTACGGCGCGTCAACAAGCTCTTTGCGAGGGTGGAGAAAGACATCAGATTCAACTATTTGTGGACCAGGCTTATCAAGCTCCTCTGTGTGACACTGTTTGCGCTGCATTTTGCCGCTTGCATCTACCTGTGGATGGCATTCAACTACAAGATCAAGGAACTTACATGGATAGGTAGCCAGATCCATAGCTTTGAGGACCGAAGCGTGTGGTTTTGCTACACCTGTGCAGTGTACTGGTCCATCACCACGCTTGCCACGGTCGGCTACGGTGACCTGCATGCCACCAACATTGGCGAGATGCTTTTCAGCATAGCCTTCATGCTTTTCAACATGGGCCTCACATCCTACATCATCGGCAACATCACTAACCTCGTTGTCCGTGAAACCTCCAACACCTTCAAGATGAGGGACATGGTGCAGCGGGTGTCGGAGTTCGGGAGCATGAACCGGTTGCCAGAGGCGATGAGGGAGCAGATGTTGGCCAGCGTGCAGCTCAGGTTCAGGACAGATGAGCAGCTGCAGCAGGAGTTGTTGTCAGAGCTGCCCAAGGCTGTGCGGTCGAGCGTCATGAAGCACATGTTCAAGAGTGCTATCGAGAGCTGCTACCTATTCCAGGGAGTCTCCGACAGCCTCATTGTGCAGCTGGTCGCGGAGATGAAAGCAGAATTCTTCCCCCCCAAGGCTAATGTTATCCTGGAGAATGAGACCTCGACGGACTGTTATATCATCATCTCTGGCGAAGTGGAGGCATTGACAACCCTTGCAGATGGGACAGAGAAGCATGTGAAGAGAATAGGACCTCGGGGCATGGCAGGGGAAATCGGGGTGATGTTCAGCATTCCGCAGCCATTCACCATCCGGAGCATGAGCCTCACCCATGTTGTCCGCATAAGCCATATCCATCTGCTCCAGGCTGTCCGGCCTAACACCGCAGATGGGTACATCGTGTTCTCCAATTTTATTCAGTACCTTGAGTCTCTGAAGGTGCAAACAAAGGATGTGGCTTTTGTCAGCGATCATCTTTGGAATGGAAACTCAATGGTTTTGGGAAGGGCAACCGAGGTTGCTGTAGATGAATCAAAAGAGGCCGCTCACAAAATGTTACCGTGCAAAGAACCCAAACGGGTTGTTATTCATGAGCAACTTCCCAACGCGACTAGCACAACACTCCATCCTTCGCCTGGGAAGCTCGTCTTACTCCCAGATTCGATGCAAGAACTGATGAAACTTTCAGAAAAGAAATTTGGGAAGGCCGTGAGAGGGATCCTCACTGTGGAAGGAGCCGAGAATTAG More
Protein seq	MAARSELLRPAFGEASPSLGRFVINPHSCSYRWWHMFLIMLVLYSAWASPFELSMEKTASIALVVTDLVVDVFFAIDIALSFFVAYRDTSTGLLITDRRKITMRYLKRPCFALDVASTIPLQIIYQLVTGKRQGLWGLLNLLRLWRLRRVNKLFARVEKDIRFNYLWTRLIKLLCVTLFALHFAACIYLWMAFNYKIKELTWIGSQIHSFEDRSVWFCYTCAVYWSITTLATVGYGDLHATNIGEMLFSIAFMLFNMGLTSYIIGNITNLVVRETSNTFKMRDMVQRVSEFGSMNRLPEAMREQMLASVQLRFRTDEQLQQELLSELPKAVRSSVMKHMFKSAIESCYLFQGVSDSLIVQLVAEMKAEFFPPKANVILENETSTDCYIIISGEVEALTTLADGTEKHVKRIGPRGMAGEIGVMFSIPQPFTIRSMSLTHVVRISHIHLLQAVRPNTADGYIVFSNFIQYLESLKVQTKDVAFVSDHLWNGNSMVLGRATEVAVDESKEAAHKMLPCKEPKRVVIHEQLPNATSTTLHPSPGKLVLLPDSMQELMKLSEKKFGKAVRGILTVEGAEN More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.000000	0.000000	0.000000

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_06g0254200	RBH	0.133193	0.136593	0.153070
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os06g14310	RBH	0.092963	0.094819	0.040668
Nipponbare \| IRGSP 1.0 \| RAP-db	Os06g0254200	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_06g0010210	RBH	0.375658	0.0	0.000000
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_06g0010090	RBH	0.131193	0.000000	0.363580
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_06g0010080	RBH	0.000000	0.000000	0.000000
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_06g0010090	RBH	0.055003	0.000000	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_06g0010160	RBH	0.000000	0.0	0.000000
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_06G0132100	RBH	0.254105	0	0
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_06g0009730	RBH	0.000000	0.0	0.000000
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_06G0135500	RBH	0.598375	0	0.008226
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_06g0010180	RBH	0.000000	0.000000	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_06g0010010	RBH	0.000000	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_06g0010040	RBH	0.000000	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_06g0010220	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_06g0009960	RBH	0.000000	0.000000	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_06g0010190	RBH	0.000000	0.000000	0.000000

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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