Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0010180 | OGI:06022200 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:8155409-8159907 | ||||||||
| Gene Symbol | NKT5, OsNKT5 | ||||||||||
| DNA seq | atggccgctagaagcgagcttctccggccagcatttggtgaagcatctccttcgctaggacggtttgtcatcaaccctcacagctgcagctacaggtggtggcacatgttcctgatcatgctggtgttgtactcggcatgggcatcgccattcgagctgtccatggagaagacagcttccattgctcttgttgtcacagacctggtggtcgatgtcttcttcgccattgacattgccttatccttcttcgtcgcataccgtgacacctccaccggcctcctcataactgaccgcaggaagatcacaatgaggtacctgaaacggccgtgtttcgctctagatgtggcctcgacgattcctttacaaataatctaccagcttgtgactggcaaaagacaaggactgtgggggctcctcaatcttctccgtctttggcgactacggcgcgtcaacaagctctttgcgagggtggagaaagacatcagattcaactatttgtggaccaggcttatcaagctcctctgtgtgacactgtttgcgctgcattttgccgcttgcatctacctgtggatggcattcaactacaagatcaaggaacttacatggataggtagccagatccatagctttgaggaccgaagcgtgtggttttgctacacctgtgcagtgtactggtccatcaccacgcttgccacggtcggctacggtgacctgcatgccaccaacattggcgagatgcttttcagcatagtcttcatgcttttcaacatgggcctcacatcctacatcatcggcaacatcactaacctcgttgtccgtgaaacctccaacaccttcaagatgagggacatggtgcagcgggtgtcggagttcgggagcatgaaccggctgccagaggcgatgagggagcagatgttggccagcgtgcagctcaggttcaggacagatgagcagctacagcaggagatgttgtcagagctgcccaaggctgtgcggtcgagcgtcatgaagcacatgttcaagagtgctatcgagagctgctacctattccagggagtctccgacagcctcattgtgcagctggtcgcggagatgaaagcagaattcttcccccccaaggctaatgttatcctggagaatgagacctcgacggactgttatattatcatctctggcgaagtggaggcattgacaacccttgcagatgggacagagaagcatgtgaagagaataggacctcggggcatggcaggggaaatcggggtgatgttcagcattccgcagccattcaccatccggagcatgagcctcacccatgttgtccgcataagccatatccatctgctccaggctgtccggcctaacaccgcagatgggtacatcgtgttctccaattttattcagtaccttgagtctctgaaggtgcaaacaaaggatgtggcttttgtcagcgatcatctttggaatggaaactcaatggttttgggaagggcaaccgaggttgctgtagatgaatcaaaagaggccgctcacaaaatgttaccgtgcaaagaacccaaacgggttgttattcatgagcaacttcccaacgcgactagcacaacactccatcctttgcctgggaagctcgtcttactcccagattcgatgcaagaactgatgaaactttcagaaaagaaatttgggaaggccgtgagagggatcctcactgtggaaggagccgaggtcgaggacattgaagtgataagagatggcgatcacctgttctttagttagtaggatatgctatatgctatggcagattgtaaatgtatatgatatgagcatttatatatatccaaaaagataatattaatggcaaatcgctgcactaggacaaacttaatgatataaaataggttttctcaaatcttattaagagtgcatccgtatatacataatattcatataaaccaatatttaaatcataatgattgaagtcaggcaactataactccactaccatacaccagtgcttctccaaatatggcattttgtaagtacacgaacaatacctatgatgcaatacaatgtatttgggataacttcatttcccaattactttatacagtactcctaaatgataggctccggcaaactgtactttgtgaagatgccctctcttcctccaacttgacgaacacactaccatcgtatatacctctcacactatccttgtgaaaatatccattcttatcacttgcaagaccataaattagcccccactcctgtataggtgcagccctgtgttttcaaggaaaaggtgtaattaaacttaagtaatcacaggtaaccatttttgttagaaactttaattttgttttaatgaaaaccaagaacttatagcatcaactaagagcatgcattttctttttcatttgatatggataacggcttaaaaggatgtttttagaatggaagatctatatattaagacaacaatcctcctttcatgttcaacttcaaaaccagtagaattaacatcctcaattgtattctattatggttttggaacagatagataagggtttcatttacatatctaaaggggtatttggttgccaaccacagtttgaccacattctgtttggttgtagccacaattatggcaagattcttttctaataaactaggtctcacatgtcattgactcagagaagtgtggtgatgctcccttagatttgataaggtgtggccaataatgtgatcgccacaacttaggcaagtggtaatatttgttagcaaatggtgataaagtatggctaagaaacaaacacaccgggtcccgttcttttcttcaacaagagttggatgaaaattaagatttttgtggcacgcttttcaaactactaagcagtgcgtttcgtgcgaaaactttctatatgaaagttattctaaaatatcatattaatctagttttcaagtttgtaataattaaaactcaatcaatcatacgttaataccatctcgttttgcgtaaaaaaattaatcttcatcttcatctttaggagaaatgaacaccatctaagtgtcattcactttcctacttttcgcagcatatacctatgttggtgttggtgtagaggccaggttttacctattattttaaaaaataaatccactttcctactaggaaaccacatcattgaaaatcaccactatgacaaccaaaacatggtgattgaaagtttaaggtaaaaagatatactttgaatacagttcaatggtcaaaaatgaacttatagttgccccaagaacgtaattgacagtttttttttgtgtggggagttattgatagtaactgaccaaacatattaagaaaattaccatgattgtgggtcatctggatctcgatttgctagaatcatctctttgacctccaaggatgttaatgcatctggtctattttttgcgtgtttcgagaaaatttcctcaaactttgcaggaacaaacctgaaaattatcatgtttaatatacatatatagatccaaacaaagtgtagaaaacttcaaaaagagcatgcaattaattctaaagaccaggcctaaataggcctcccgcataatgaatatgtgcaaataagatgcaatataattattaaaattaaaacaaattgatacttatgaaatttgagtccaaaaataattgagttttgcatggttttatgagaagaaagaagagataatttgaaccatagatatattattgaaatgctagaaataattgaggtgatgtggcttaatgagagaagagaaaaataacattaattacacttagtggggaataggattacactcgaataaatataggatgatgccatgaccattttgatttaaggaaaaataatagtgtgttactattatgacctctggattaattgcaacacataccgtactagaaaagagtgtgtgggaggaatttttgccaaggcataacttaattaatcatgtatagtattgaataaaatatgcatctaaaagttgtatttcctattaaacaaaagatagagtatatcaagcaaatgttcaaaactcactaaagttcttttgtatgcatgtactcctaaagcatttaaactaaaaatatgtaattatcttgctatttagatacgtatgcatcacatattattgttaatatgcttgacattaattatatgatataatgtgatatcttccaacacttatgtaagatatgtatatataggcatgtggttggtgttaccttcctttagcatctagtgcacctgtgtcactcccgtgcattcctttatagatgttctttatgtatatcgacaagtgaggtaatggtgcgtccttctgcacatttgaatgcggaaacaatacctggtcaattatttccttgtgtgtacaataaattaaatagcatatctagttagtctattttggaccaaattcataataaacatgtcattatttttatatgatttgtttagaattag
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| CDS seq | atggccgctagaagcgagcttctccggccagcatttggtgaagcatctccttcgctaggacggtttgtcatcaaccctcacagctgcagctacaggtggtggcacatgttcctgatcatgctggtgttgtactcggcatgggcatcgccattcgagctgtccatggagaagacagcttccattgctcttgttgtcacagacctggtggtcgatgtcttcttcgccattgacattgccttatccttcttcgtcgcataccgtgacacctccaccggcctcctcataactgaccgcaggaagatcacaatgaggtacctgaaacggccgtgtttcgctctagatgtggcctcgacgattcctttacaaataatctaccagcttgtgactggcaaaagacaaggactgtgggggctcctcaatcttctccgtctttggcgactacggcgcgtcaacaagctctttgcgagggtggagaaagacatcagattcaactatttgtggaccaggcttatcaagctcctctgtgtgacactgtttgcgctgcattttgccgcttgcatctacctgtggatggcattcaactacaagatcaaggaacttacatggataggtagccagatccatagctttgaggaccgaagcgtgtggttttgctacacctgtgcagtgtactggtccatcaccacgcttgccacggtcggctacggtgacctgcatgccaccaacattggcgagatgcttttcagcatagtcttcatgcttttcaacatgggcctcacatcctacatcatcggcaacatcactaacctcgttgtccgtgaaacctccaacaccttcaagatgagggacatggtgcagcgggtgtcggagttcgggagcatgaaccggctgccagaggcgatgagggagcagatgttggccagcgtgcagctcaggttcaggacagatgagcagctacagcaggagatgttgtcagagctgcccaaggctgtgcggtcgagcgtcatgaagcacatgttcaagagtgctatcgagagctgctacctattccagggagtctccgacagcctcattgtgcagctggtcgcggagatgaaagcagaattcttcccccccaaggctaatgttatcctggagaatgagacctcgacggactgttatattatcatctctggcgaagtggaggcattgacaacccttgcagatgggacagagaagcatgtgaagagaataggacctcggggcatggcaggggaaatcggggtgatgttcagcattccgcagccattcaccatccggagcatgagcctcacccatgttgtccgcataagccatatccatctgctccaggctgtccggcctaacaccgcagatgggtacatcgtgttctccaattttattcagtaccttgagtctctgaaggtgcaaacaaaggatgtggcttttgtcagcgatcatctttggaatggaaactcaatggttttgggaagggcaaccgaggttgctgtagatgaatcaaaagaggccgctcacaaaatgttaccgtgcaaagaacccaaacgggttgttattcatgagcaacttcccaacgcgactagcacaacactccatcctttgcctgggaagctcgtcttactcccagattcgatgcaagaactgatgaaactttcagaaaagaaatttgggaaggccgtgagagggatcctcactgtggaaggagccgagaattag
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| Protein seq | MAARSELLRPAFGEASPSLGRFVINPHSCSYRWWHMFLIMLVLYSAWASPFELSMEKTASIALVVTDLVVDVFFAIDIALSFFVAYRDTSTGLLITDRRKITMRYLKRPCFALDVASTIPLQIIYQLVTGKRQGLWGLLNLLRLWRLRRVNKLFARVEKDIRFNYLWTRLIKLLCVTLFALHFAACIYLWMAFNYKIKELTWIGSQIHSFEDRSVWFCYTCAVYWSITTLATVGYGDLHATNIGEMLFSIVFMLFNMGLTSYIIGNITNLVVRETSNTFKMRDMVQRVSEFGSMNRLPEAMREQMLASVQLRFRTDEQLQQEMLSELPKAVRSSVMKHMFKSAIESCYLFQGVSDSLIVQLVAEMKAEFFPPKANVILENETSTDCYIIISGEVEALTTLADGTEKHVKRIGPRGMAGEIGVMFSIPQPFTIRSMSLTHVVRISHIHLLQAVRPNTADGYIVFSNFIQYLESLKVQTKDVAFVSDHLWNGNSMVLGRATEVAVDESKEAAHKMLPCKEPKRVVIHEQLPNATSTTLHPLPGKLVLLPDSMQELMKLSEKKFGKAVRGILTVEGAEN |
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| Function | Potassium channel KAT4 [UniProtKB/Swiss-Prot:Q652U9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0010180 | OsLima_06g0010180.01 | Chr06 | 8155409 | 8159907 | + | NAM | ||
| CDS seq | atggccgctagaagcgagcttctccggccagcatttggtgaagcatctccttcgctaggacggtttgtcatcaaccctcacagctgcagctacaggtggtggcacatgttcctgatcatgctggtgttgtactcggcatgggcatcgccattcgagctgtccatggagaagacagcttccattgctcttgttgtcacagacctggtggtcgatgtcttcttcgccattgacattgccttatccttcttcgtcgcataccgtgacacctccaccggcctcctcataactgaccgcaggaagatcacaatgaggtacctgaaacggccgtgtttcgctctagatgtggcctcgacgattcctttacaaataatctaccagcttgtgactggcaaaagacaaggactgtgggggctcctcaatcttctccgtctttggcgactacggcgcgtcaacaagctctttgcgagggtggagaaagacatcagattcaactatttgtggaccaggcttatcaagctcctctgtgtgacactgtttgcgctgcattttgccgcttgcatctacctgtggatggcattcaactacaagatcaaggaacttacatggataggtagccagatccatagctttgaggaccgaagcgtgtggttttgctacacctgtgcagtgtactggtccatcaccacgcttgccacggtcggctacggtgacctgcatgccaccaacattggcgagatgcttttcagcatagtcttcatgcttttcaacatgggcctcacatcctacatcatcggcaacatcactaacctcgttgtccgtgaaacctccaacaccttcaagatgagggacatggtgcagcgggtgtcggagttcgggagcatgaaccggctgccagaggcgatgagggagcagatgttggccagcgtgcagctcaggttcaggacagatgagcagctacagcaggagatgttgtcagagctgcccaaggctgtgcggtcgagcgtcatgaagcacatgttcaagagtgctatcgagagctgctacctattccagggagtctccgacagcctcattgtgcagctggtcgcggagatgaaagcagaattcttcccccccaaggctaatgttatcctggagaatgagacctcgacggactgttatattatcatctctggcgaagtggaggcattgacaacccttgcagatgggacagagaagcatgtgaagagaataggacctcggggcatggcaggggaaatcggggtgatgttcagcattccgcagccattcaccatccggagcatgagcctcacccatgttgtccgcataagccatatccatctgctccaggctgtccggcctaacaccgcagatgggtacatcgtgttctccaattttattcagtaccttgagtctctgaaggtgcaaacaaaggatgtggcttttgtcagcgatcatctttggaatggaaactcaatggttttgggaagggcaaccgaggttgctgtagatgaatcaaaagaggccgctcacaaaatgttaccgtgcaaagaacccaaacgggttgttattcatgagcaacttcccaacgcgactagcacaacactccatcctttgcctgggaagctcgtcttactcccagattcgatgcaagaactgatgaaactttcagaaaagaaatttgggaaggccgtgagagggatcctcactgtggaaggagccgagaattag
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| Protein seq | MAARSELLRPAFGEASPSLGRFVINPHSCSYRWWHMFLIMLVLYSAWASPFELSMEKTASIALVVTDLVVDVFFAIDIALSFFVAYRDTSTGLLITDRRKITMRYLKRPCFALDVASTIPLQIIYQLVTGKRQGLWGLLNLLRLWRLRRVNKLFARVEKDIRFNYLWTRLIKLLCVTLFALHFAACIYLWMAFNYKIKELTWIGSQIHSFEDRSVWFCYTCAVYWSITTLATVGYGDLHATNIGEMLFSIVFMLFNMGLTSYIIGNITNLVVRETSNTFKMRDMVQRVSEFGSMNRLPEAMREQMLASVQLRFRTDEQLQQEMLSELPKAVRSSVMKHMFKSAIESCYLFQGVSDSLIVQLVAEMKAEFFPPKANVILENETSTDCYIIISGEVEALTTLADGTEKHVKRIGPRGMAGEIGVMFSIPQPFTIRSMSLTHVVRISHIHLLQAVRPNTADGYIVFSNFIQYLESLKVQTKDVAFVSDHLWNGNSMVLGRATEVAVDESKEAAHKMLPCKEPKRVVIHEQLPNATSTTLHPLPGKLVLLPDSMQELMKLSEKKFGKAVRGILTVEGAEN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0254200 | RBH | 0.133193 | 0.136593 | 0.153070 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g14310 | RBH | 0.092963 | 0.094819 | 0.040668 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0254200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0010210 | RBH | 0.375658 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0010090 | RBH | 0.131193 | 0.000000 | 0.363580 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0010080 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0010090 | RBH | 0.055003 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0010160 | RBH | 0.000000 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0132100 | RBH | 0.254105 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0009730 | RBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0135500 | RBH | 0.598375 | 0 | 0.008226 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0010010 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0010040 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0010220 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0009960 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G009880 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0010190 | RBH | 0.000000 | 0.000000 | 0.000000 |
