Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_06G009200 | OGI:01022060 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr06:7335488-7337219 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCAAGACGCCATCGACATTATCCGGATCCTGAAGTTGAAGACCATTTTGAGGATTCAACACAAGATGAACCTTCAGATTCTTTGGTTACTTCAACAAAAGAAAGTAAGGGTGGTCGTGGTCCAAATGTTTTGATGGCACCAGTTCCAGAGAAAGATAGGGCAGTGATAACTCCACTTAATAAAGAGTAAGTTGACACTCTAAATTTCTGCTTATATTAAAACACACACTGTCTATCACACACACAAACACACACTCCATATAATATGTATATCATTGTTGTTAATAATTGAAAATCTTGTTGTAAACTCCATGTTAAATTTTAAGAAATACAGATGCATAGTTCCTATAAATCCAATATTATGATGGCTGAACATATTTTTTTGTCACTTTCATTGTTTTACACTAATATTACCTAACTTGGTAAATGGCATGTTGTTTCTAGTGCTTGGATTACGAATCCTATGAAGAAGAATGTTTCATCTACCATCACATGTCTTATAAAACCTCACTACCCTGGCACATATAGACCTTTGGATAAACATGGCAAACAGGTGCCTGAGGATGAAGCAGTTGTCATTGCTCATTATCACAACTTTCCTGCTCATACAAGGATAACTATTCTGAAGGAATTTTTGGTGAGTTGCAGTGTTAGCATTCACATAGAATATTTAGGTTCTTTTAATGGATTGACGTCCTACCTTATCCTTTTACAGCTGCGTTTTAAGTTTGCTGATGGTAGAGAAGAGGATTGTACTAGATTATTTTATCGCAAAGCTGTTGAACGTTTTAGCCAAGCTTTGTCACATGAGAAATCTGAAGCAAAACGTTCTTTGGAGAAGCATATCGAAAATATGCGTGCGACTGAGTTACAACAGGATGGAGATGCCCCTTCTCATGATGATTTTGATGTTGATGATCCTCAACTTTGGAAGGCATTCCCTCCTTATTGGATTGAGCAAAAGTGGTGGGATATGTTGTGTGACTTGTGGTCTGATGAAAATGTAAAGAAGGTGTCAGCTCAAAACAGCAAAAATTGGATGGAAGGAGGTGGTGTTCATCATACTTGTGGTTCACGAAATGTTGCTATGCATAAACAAGCCATGGTACCAAAGTTAAATGATTTTCCTATTATGATTTATACTACTTTGACTTCTCACTATGATATGTACTTTTGGATAGATAATTGAGAATGCAGGGACGGATGTTGATGATATTGATGTCTTTGAACGCACACATCGACATGCAAAGGGCAAGGGACAGTATGCCAACAAGAAAGCTGAACAGTTAGCGGTATGTGTTCTGCTTATTCTAGTTTCTAGTTTCAAGTTTGGCAATCAAAAAAAGTGAAATCATCTAAAACCATGCAATGGTGCCACTACATATCTTAATTAGGTGGTGTATAATGATCGTGTCAAGGAAGGAGAAAACAATCAAGTCGACAAACAACATGTTTGGGTGAAGCTCACTAAAGGTAGAAAACGTGGAAGGTATTATTGTCTTCCAGGAATTATAGATAGAAACCATGTTGGTAATTCAGCAAGTGCACCATCTGGTAGCATGGAGACACAGCCACTATACACACAGCAGCAAGTGCAAGACATTGTTCAGCAGGCAGTCACTAATGCTGTGAACAATGCTCATCAAGAACTAGCATCAAGGATAGAAAGGCTAGAGCAGACAGTGGATAAGGATAAGGCAGAAACTCATTCCCATGTAAGTATAAATTAA
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| CDS seq | ATGTCAAGACGCCATCGACATTATCCGGATCCTGAAGTTGAAGACCATTTTGAGGATTCAACACAAGATGAACCTTCAGATTCTTTGGTTACTTCAACAAAAGAAAGTAAGGGTGGTCGTGGTCCAAATGTTTTGATGGCACCAGTTCCAGAGAAAGATAGGGCAGTGATAACTCCACTTAATAAAGATGCTTGGATTACGAATCCTATGAAGAAGAATGTTTCATCTACCATCACATGTCTTATAAAACCTCACTACCCTGGCACATATAGACCTTTGGATAAACATGGCAAACAGGTGCCTGAGGATGAAGCAGTTGTCATTGCTCATTATCACAACTTTCCTGCTCATACAAGGATAACTATTCTGAAGGAATTTTTGCTGCGTTTTAAGTTTGCTGATGGTAGAGAAGAGGATTGTACTAGATTATTTTATCGCAAAGCTGTTGAACGTTTTAGCCAAGCTTTGTCACATGAGAAATCTGAAGCAAAACGTTCTTTGGAGAAGCATATCGAAAATATGCGTGCGACTGAGTTACAACAGGATGGAGATGCCCCTTCTCATGATGATTTTGATGTTGATGATCCTCAACTTTGGAAGGCATTCCCTCCTTATTGGATTGAGCAAAAGTGGTGGGATATGTTGTGTGACTTGTGGTCTGATGAAAATGTAAAGAAGGTGTCAGCTCAAAACAGCAAAAATTGGATGGAAGGAGGTGGTGTTCATCATACTTGTGGTTCACGAAATGTTGCTATGCATAAACAAGCCATGATAATTGAGAATGCAGGGACGGATGTTGATGATATTGATGTCTTTGAACGCACACATCGACATGCAAAGGGCAAGGGACAGTATGCCAACAAGAAAGCTGAACAGTTAGCGGTGGTGTATAATGATCGTGTCAAGGAAGGAGAAAACAATCAAGTCGACAAACAACATGTTTGGGTGAAGCTCACTAAAGGTAGAAAACGTGGAAGGTATTATTGTCTTCCAGGAATTATAGATAGAAACCATGTTGGTAATTCAGCAAGTGCACCATCTGGTAGCATGGAGACACAGCCACTATACACACAGCAGCAAGTGCAAGACATTGTTCAGCAGGCAGTCACTAATGCTGTGAACAATGCTCATCAAGAACTAGCATCAAGGATAGAAAGGCTAGAGCAGACAGTGGATAAGGATAAGGCAGAAACTCATTCCCATGTAAGTATAAATTAA
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| Protein seq | MSRRHRHYPDPEVEDHFEDSTQDEPSDSLVTSTKESKGGRGPNVLMAPVPEKDRAVITPLNKDAWITNPMKKNVSSTITCLIKPHYPGTYRPLDKHGKQVPEDEAVVIAHYHNFPAHTRITILKEFLLRFKFADGREEDCTRLFYRKAVERFSQALSHEKSEAKRSLEKHIENMRATELQQDGDAPSHDDFDVDDPQLWKAFPPYWIEQKWWDMLCDLWSDENVKKVSAQNSKNWMEGGGVHHTCGSRNVAMHKQAMIIENAGTDVDDIDVFERTHRHAKGKGQYANKKAEQLAVVYNDRVKEGENNQVDKQHVWVKLTKGRKRGRYYCLPGIIDRNHVGNSASAPSGSMETQPLYTQQQVQDIVQQAVTNAVNNAHQELASRIERLEQTVDKDKAETHSHVSIN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_06G009200 | OsN22_06G009200_01 | Chr06 | 7335488 | 7337219 | + | NAM | ||
| CDS seq | ATGTCAAGACGCCATCGACATTATCCGGATCCTGAAGTTGAAGACCATTTTGAGGATTCAACACAAGATGAACCTTCAGATTCTTTGGTTACTTCAACAAAAGAAAGTAAGGGTGGTCGTGGTCCAAATGTTTTGATGGCACCAGTTCCAGAGAAAGATAGGGCAGTGATAACTCCACTTAATAAAGATGCTTGGATTACGAATCCTATGAAGAAGAATGTTTCATCTACCATCACATGTCTTATAAAACCTCACTACCCTGGCACATATAGACCTTTGGATAAACATGGCAAACAGGTGCCTGAGGATGAAGCAGTTGTCATTGCTCATTATCACAACTTTCCTGCTCATACAAGGATAACTATTCTGAAGGAATTTTTGCTGCGTTTTAAGTTTGCTGATGGTAGAGAAGAGGATTGTACTAGATTATTTTATCGCAAAGCTGTTGAACGTTTTAGCCAAGCTTTGTCACATGAGAAATCTGAAGCAAAACGTTCTTTGGAGAAGCATATCGAAAATATGCGTGCGACTGAGTTACAACAGGATGGAGATGCCCCTTCTCATGATGATTTTGATGTTGATGATCCTCAACTTTGGAAGGCATTCCCTCCTTATTGGATTGAGCAAAAGTGGTGGGATATGTTGTGTGACTTGTGGTCTGATGAAAATGTAAAGAAGGTGTCAGCTCAAAACAGCAAAAATTGGATGGAAGGAGGTGGTGTTCATCATACTTGTGGTTCACGAAATGTTGCTATGCATAAACAAGCCATGATAATTGAGAATGCAGGGACGGATGTTGATGATATTGATGTCTTTGAACGCACACATCGACATGCAAAGGGCAAGGGACAGTATGCCAACAAGAAAGCTGAACAGTTAGCGGTGGTGTATAATGATCGTGTCAAGGAAGGAGAAAACAATCAAGTCGACAAACAACATGTTTGGGTGAAGCTCACTAAAGGTAGAAAACGTGGAAGGTATTATTGTCTTCCAGGAATTATAGATAGAAACCATGTTGGTAATTCAGCAAGTGCACCATCTGGTAGCATGGAGACACAGCCACTATACACACAGCAGCAAGTGCAAGACATTGTTCAGCAGGCAGTCACTAATGCTGTGAACAATGCTCATCAAGAACTAGCATCAAGGATAGAAAGGCTAGAGCAGACAGTGGATAAGGATAAGGCAGAAACTCATTCCCATGTAAGTATAAATTAA
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| Protein seq | MSRRHRHYPDPEVEDHFEDSTQDEPSDSLVTSTKESKGGRGPNVLMAPVPEKDRAVITPLNKDAWITNPMKKNVSSTITCLIKPHYPGTYRPLDKHGKQVPEDEAVVIAHYHNFPAHTRITILKEFLLRFKFADGREEDCTRLFYRKAVERFSQALSHEKSEAKRSLEKHIENMRATELQQDGDAPSHDDFDVDDPQLWKAFPPYWIEQKWWDMLCDLWSDENVKKVSAQNSKNWMEGGGVHHTCGSRNVAMHKQAMIIENAGTDVDDIDVFERTHRHAKGKGQYANKKAEQLAVVYNDRVKEGENNQVDKQHVWVKLTKGRKRGRYYCLPGIIDRNHVGNSASAPSGSMETQPLYTQQQVQDIVQQAVTNAVNNAHQELASRIERLEQTVDKDKAETHSHVSIN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0392500 | SBH | 0.000000 | 0.0 | 0.324302 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g22720 | RBH | 0.000000 | 0.432516 | 0.396400 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0392500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0009170 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0008820 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0007140 | SBH | 0.0 | 0.0 | 0.905333 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0008710 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0010690 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0497300 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0012880 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0192600 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0013440 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0012980 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0008750 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0013320 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0031860 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G009230 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0009470 | RBH | 0.0 | 0.0 | 0.0 |
