Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_03g0031860 | OGI:01022060 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr03:31299789-31307367 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaaaagaagggctctctagctctcacgaaaaaaaCccccaagtcccaatccatctttttccttcccgcgattttctggcattccccccaaaatcatcgacccccattatcccatctctcccactccccatgtttgccggtctaattgtgatttcctcatctgattggagaaatttatttgcccctccgtgagtttgtagcacccaaTtttcttcatttgttttcttcctcgcgtgatcgctaacaatcccctgccgcgcgcttgcctcaacgcaggtcggcacccccgtcgcactccgagccttcaggtgcggcacctcctgtagcccggtgcctgacacccaggcccagcactcctacctcgtcggagtgtgccgctctgccgtgccccgatccttcctcctcaggtaacatcttgattaatgtgtgcctaccagctgctcgatggaattcccctgtgagaattttgtcatgtcctgtgattttcatcttttgtgattgtatcccaggagcatctcaactaatgattttgaaagaatgttcatcatccTtttggtttcttctactctccttgctccaggatgttggatattggattaatttgtttatggtttaagtatacacactaaaatttgctctctaacttgcacatgtatgactcaagttcctgacgatggttgttttctaattctttagttgctcgctactagatatttttattgcccaaaaattacgagtatctctagtagatatatattctatcatcagttcttcggattagaatatacaggtagaaattattaacgtagtttaatttatgattggtactgatctcaggattgctttaagtggttagAaaattcaggtctcctgaaagtacggtggaatttgaatgttaataattgtgcaatctcaggattgctttaagtggttagaaaattcaggtctcctgaaagtacgatggaatttgagtgttaataattgtgcaatctgatagcaaaccattggcatgtgtgcaaaaattcagtaaattaaacaagctaagacacatgttgtttattcttttggtgtattgaagtgtagatagagtaaacaaattatagagAaatatgtactacttaatatgttcaagttatcactaataatgatttatctgggagcaattattttttgtatttaaaagaagatttgctattagtctacatctaatctttcctcttcttattttgataaaattcctttacataatctttcaaatatgcatccttaccatataatttcaagtgtagggctagccattatttgcatgtcagaatagcttgtttagtgtgagattaatggctgaggaccgtagttggatgtataaaagggtagtgaatggatacatttcagatgagtatttgaaaggagttaagaggtttatgtcacacgctgtatcaaagttacaaggtcaggcagagaaaagggttagatgcccttgtacgaagtgcaagaatggacagctgcatgacAaaagaatagttcaaatgcacctttgcaataaaggatttactgaaaattaccatgtgtggagtagacatggtgaaagtggagctgataccagtgagacaccagaaggcagtattgacaatgagatgaatgaaggaggtaatgcctatggagagtcagatcatatagatgagatggtgttggatgccgcagggcctaatttttgtcaaaatattgaagagcctccaaatgctgaagcagcttcattttttgatatgttagatgcagcagacaagccattgtgggagaagtgtggaaaacactctcaattatctgcagtctctcGgttgttgacaataaaatcagaccataatatgtctgtagcttgctttgatgagttggtcaaggttatgaaagaaatgttgcctccagatgcaaatttgccagggagtttttacaaatgcaagaaagtcgtcgaagctttaggtatgcctgtccAaaagattgatgtttgtaagaatggttgcatgttatactataaggagcatgctaacaaaaggaaatgtataacatgtaataagcctcgttatattgaagggttagaactccctgagaataagaagggcactccacagaaggtgcttcgctacctcccaatcattccacgcctacagaggctctacatgtcacgaggcactgcaacacacatgacataccacaaggatgggcttgaatcagagaggtgcaacaatgaaagcagaaagaaaacgttaactcacccagcagagagtgaagcatggaagcatattgattcaaagtaccctaattttgcaaaggagcctcgaaatgtgcgtttagggttgtcaactaatggattcacgccatttaatcaaactgcaaccccttactcctgttggcctgtttttgttgtcccatataacctgcccccagcattatgcatgaaggcacataatattttccttaccatggttataccagggcctacgcaccctggaaagaacatagatgtattcttccgtccactaattgatgaacttttgcaactttggacagaaggagttgtgacatatgatcgctcAaaaaaccagaactttgtcatgcgagctgcccttatggggacagtaagtgactttcctgcatatgggatgttgtgcggctggagcacacacgggaaattagcttgtccaatttgcatggaagacacaaagtcattttggctaaaagttggaggcaagccatgttggtttgattgtcataggcgtttcctaccaaagggacacccttttagacgtgcaaaagacaagttcatccagaataaggaggagaaagatggcccacctattcatcgatcatcttcagaagtgtatgattgtgttaaatctctccctcaaattacatttggtaccaaggcaggaaatcaagagattgagggttttggaaaggagcataattgggtaaaaagatctatcttttgggagttgccttactggcgtgagttgttagtacggcacaaccttgatgtgatgcacattgaaaagaatgtgtttgacaatatatggaatactttgatggatatcccaaagaggactaaagataatgtcaaggctcgatttgatttagccaatatatgcaatcgcaaagaacttcatatgcaacaaaaatttataggtcgatgggtgaaaccAaaagcttgttatagtgtctagataaggcacagaagaaattggtactgcaatgggttaagaatcttaaattccctgatggttatgcatcaaatttagcacggggtgttgatattaatcggggtgttgatatttcctccccaagcacatctggaagtgtttagcagaactgagctacttctttaggcaactatgtgcaaaagaggtggatatagaacaaatgaagcacctacaaaaggaagtgccagtcattgtgtgtaaacttgaacagatttttcctcctggattttttgattgtatggaacacttggtggtgcatctagcttatgaagctttaattggagggcctgtagcttaccgctggatgtatgtatttgaaaggtatgtttctttggttaagtactaaagtgtgaatttgtatattaatttcataattatgttttctgctcaattcatagggagttacatgaggctcgcaagaaggttcgaaacaaagcacgtgtcgaaggttcaattgtagaggggtatagagtacaggaggtctctAattttatttctatgtactttgctgatcatgtgcgaacaaagcacactcgcgtccctagacatgatgatggtggtttcagagcacctactgactggctgtctatattctctatcccatatcgcactcttggaaagagcacatcacgtaacttatcaagagaagaatggcaggctgctagggtatatgcattactcaattgtgcagaagttgacaaatatgtcttgtaagtatatattattctgttttcctattttattacttgggctctatttttgtgaatatgacatattacatttatgttattgcaataaatgtcaggaaatttgatagggagatgaaacaacAaaacaggaacatcactacaactcaattacaagagatgcatgagaaagattttccaacctggcttcgtgagttggtaagaatacatgatgtaatatctgatggattattatttattttaatgcatgattcatgaaaattgattctacaggctggaaaagatgaaacagttgaagaacaagtaagggctctttccattgggccccgatacatggttaagtgttataagggatgtgatgttcaggggtttcgttttcgtacacaaccatatgaacaaaagaaatcatcgaggacaacgacaaatagtggagtttgtgtgtcagcaaattggtttgataaccaagggccggactactatggcactattcaggagataatagagttggaatatgtcagtgatagtgatctaaaggtggctctatttaagtgtgactggtttgatcctaagaaaggagtgaagtatgacaaagcactaggcctagttgaagttaaccatacatcaagattggaacaatatgagccttttgtgcttgcataccaagtggaccaagtatattatacaccatatccatcgccaccacgtgaaagaaaagattggtgggttgcattcaagacaaatccaattggtactttacccgttcctgcagtggacgatgaagttgatgattcgcttcctcctgtagtttctgaatattatcaagagggagagcagcttggagctgacatttcacaggagcttggtgatgaaagcttgcttcatgaatcagatattgttgagcaagttgatccagaagatatggattttttaaatagaccaaatagccatgagaacatagagagttatgttgccatggacagtgattgcagcagtgaagatgaagggccaatagaatcagataatgactcagacaatgatagtgattctactgactaaacaattgatatatatatatatatatatatatatatatatatatatatatatatataatatatatattatatatatatatatatatgtttgtgtgtgatattattatttcattttctcatgagcagtggcattattacaaatttactatgttatctattctttaatgactacatttgcttgcaaaataaCccttgtttttactagttaagtactatgtcaagacgccatcgacattatccggatcctgaagttgaagaccattttgaggattcaacacaagatgaaccttcagattctttggttacttcaacaaaagaaagtaagggtggtcgtggtccaaatgttttgatggcaccagttccagagaaagatagggcagtgataactccactcaataaagagtaagttgacactctaaatttctgcttatattaaaacacacactgtctatcacacacactccatataatatgtatatcattgttgttaataattgaaaatcttgttgtaaactccatgttaaattttaagaaatacagatgcatagttcctataaatccaatattatgatggctgaacatatttttttgtcactttcattgttttacactaatattacctaacttggtaaatggcatgttgtttctagtgcttggattacgaatcctatgaagaagaatgtttcatctaccatcacatgtcttataaaagctcactaccctggcacatatagacctttggataaacatggcaaacaggtgcctgaggatgaagcagttgtcattgctcattatcacaactttcctgctcatacaaggataactattctgaaggaatttttggtgagttacagtgttagcattcacatagaatatttaggttcttttaatggattgacgtcctaccttatccttttacagctgcgttttaagtttactgatggtagagaagaggattgtgctagattattttatcgcaaagctgttgaacgttttagccaagctttgtcacatgagaaatctgaagcaaaacattctttggagaagcatatcgaaaatatgcgtgcgactgagttacaacaggatggagatgccccttctcatgatgattttgatgttgatgatcctcaactttggaaggcattccctccttattggattgagcaaaagtggtgggatatgttgtgtgacttgtggtctgatgaaaatgtaaagaaggtgtcagctcaaaacagaaaaaatcggatggaaggaggtggtgttcatcatacttgtggttcacgaagtgttgctatgcataaacaagccatggtaccaaagttaaatgattttcctattatgatttatactactttgacttctcactatgatatgtacttttggatagataattgagaatgcagggacggatgttgatgatattgatgtctttgaatgcacacatcgacatgcaaagggcaagggacagtatgccaacaagaaagctgaacagttagcggtatgtgttctgcttattctagtttctagtttcaagtttggcaatcaataaaagtgaaatcatctaaaaccatgcaatggtgccactacatatcttaattaggtggtgtataatgatcatgtcaaggaaggaGaaaacaatcaagtcgacaaacaacatgtttgggtgcagctcactaaaggtagaaaacgtggaaggtattatggtcttccaggaattatagatagAaaccatgttggtaattcagcaagtgcaccatctggtagcatggagacacagccactatacatacagcagcaagtgcaagacattgttcaacaggcagtcactaatgctgtgaacaatgctcatcaagaactagcatcaaggatagaaaggctagagcagacagtggataaggataaggcagaaactcattcccatgtaagtataaattaaagctatttttgttacctagaaagaacatactaactggtattatttttcaaatcacaggatgcaaatggaccatcttcttctgttgtccctgagttccttcatgcacttctcatggtatatactgacttcaatctttttactactgtacatccttattatttattctcttgaacaaacattatgaaaaatttggttcttggacaacaatagatcaatttaaaaatgttctgccagtggtatggctttagttgcgataccagttagtgagttcaatttagaaatggactgctatgtatcattcataagttcaaacttagacctacccttatagtttttcagtaactttgtagcttattctataattttatttcagaatgggatgaacactactgaagaggcgccacaagctggtcattgtggaagaacttgtgagaatgatgacctctggcgtttctaagatgtgctaatgtcgaattgcaagcatttagagatcaggaatccaggatcatgttattagacctattatagttgctagattaatcagtttgatcaatttaccttctgagactattttatttatgtgttattgtctacagacctgtcttagattaaatgcaaatatattgtctac
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| CDS seq | atgtcaagacgccatcgacattatccggatcctgaagttgaagaccattttgaggattcaacacaagatgaaccttcagattctttggttacttcaacaaaagaaagtaagggtggtcgtggtccaaatgttttgatggcaccagttccagagaaagatagggcagtgataactccactcaataaagatgcttggattacgaatcctatgaagaagaatgtttcatctaccatcacatgtcttataaaagctcactaccctggcacatatagacctttggataaacatggcaaacaggtgcctgaggatgaagcagttgtcattgctcattatcacaactttcctgctcatacaaggataactattctgaaggaatttttgctgcgttttaagtttactgatggtagagaagaggattgtgctagattattttatcgcaaagctgttgaacgttttagccaagctttgtcacatgagaaatctgaagcaaaacattctttggagaagcatatcgaaaatatgcgtgcgactgagttacaacaggatggagatgccccttctcatgatgattttgatgttgatgatcctcaactttggaaggcattccctccttattggattgagcaaaagtggtgggatatgttgtgtgacttgtggtctgatgaaaatgtaaagaaggtgtcagctcaaaacagaaaaaatcggatggaaggaggtggtgttcatcatacttgtggttcacgaagtgttgctatgcataaacaagccatgataattgagaatgcagggacggatgttgatgatattgatgtctttgaatgcacacatcgacatgcaaagggcaagggacagtatgccaacaagaaagctgaacagttagcggtggtgtataatgatcatgtcaaggaaggaGaaaacaatcaagtcgacaaacaacatgtttgggtgcagctcactaaaggtagaaaacgtggaaggtattatggtcttccaggaattatagatagAaaccatgttggtaattcagcaagtgcaccatctggtagcatggagacacagccactatacatacagcagcaagtgcaagacattgttcaacaggcagtcactaatgctgtgaacaatgctcatcaagaactagcatcaaggatagaaaggctagagcagacagtggataaggataaggcagaaactcattcccatgatgcaaatggaccatcttcttctgttgtccctgagttccttcatgcacttctcatgaatgggatgaacactactgaagaggcgccacaagctggtcattgtggaagaacttgtgagaatgatgacctctggcgtttctaa
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| Protein seq | MSRRHRHYPDPEVEDHFEDSTQDEPSDSLVTSTKESKGGRGPNVLMAPVPEKDRAVITPLNKDAWITNPMKKNVSSTITCLIKAHYPGTYRPLDKHGKQVPEDEAVVIAHYHNFPAHTRITILKEFLLRFKFTDGREEDCARLFYRKAVERFSQALSHEKSEAKHSLEKHIENMRATELQQDGDAPSHDDFDVDDPQLWKAFPPYWIEQKWWDMLCDLWSDENVKKVSAQNRKNRMEGGGVHHTCGSRSVAMHKQAMIIENAGTDVDDIDVFECTHRHAKGKGQYANKKAEQLAVVYNDHVKEGENNQVDKQHVWVQLTKGRKRGRYYGLPGIIDRNHVGNSASAPSGSMETQPLYIQQQVQDIVQQAVTNAVNNAHQELASRIERLEQTVDKDKAETHSHDANGPSSSVVPEFLHALLMNGMNTTEEAPQAGHCGRTCENDDLWRF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0031860 | OsLaMu_03g0031860.01 | Chr03 | 31299789 | 31307367 | + | NAM | ||
| CDS seq | atgtcaagacgccatcgacattatccggatcctgaagttgaagaccattttgaggattcaacacaagatgaaccttcagattctttggttacttcaacaaaagaaagtaagggtggtcgtggtccaaatgttttgatggcaccagttccagagaaagatagggcagtgataactccactcaataaagatgcttggattacgaatcctatgaagaagaatgtttcatctaccatcacatgtcttataaaagctcactaccctggcacatatagacctttggataaacatggcaaacaggtgcctgaggatgaagcagttgtcattgctcattatcacaactttcctgctcatacaaggataactattctgaaggaatttttgctgcgttttaagtttactgatggtagagaagaggattgtgctagattattttatcgcaaagctgttgaacgttttagccaagctttgtcacatgagaaatctgaagcaaaacattctttggagaagcatatcgaaaatatgcgtgcgactgagttacaacaggatggagatgccccttctcatgatgattttgatgttgatgatcctcaactttggaaggcattccctccttattggattgagcaaaagtggtgggatatgttgtgtgacttgtggtctgatgaaaatgtaaagaaggtgtcagctcaaaacagaaaaaatcggatggaaggaggtggtgttcatcatacttgtggttcacgaagtgttgctatgcataaacaagccatgataattgagaatgcagggacggatgttgatgatattgatgtctttgaatgcacacatcgacatgcaaagggcaagggacagtatgccaacaagaaagctgaacagttagcggtggtgtataatgatcatgtcaaggaaggaGaaaacaatcaagtcgacaaacaacatgtttgggtgcagctcactaaaggtagaaaacgtggaaggtattatggtcttccaggaattatagatagAaaccatgttggtaattcagcaagtgcaccatctggtagcatggagacacagccactatacatacagcagcaagtgcaagacattgttcaacaggcagtcactaatgctgtgaacaatgctcatcaagaactagcatcaaggatagaaaggctagagcagacagtggataaggataaggcagaaactcattcccatgatgcaaatggaccatcttcttctgttgtccctgagttccttcatgcacttctcatgaatgggatgaacactactgaagaggcgccacaagctggtcattgtggaagaacttgtgagaatgatgacctctggcgtttctaa
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| Protein seq | MSRRHRHYPDPEVEDHFEDSTQDEPSDSLVTSTKESKGGRGPNVLMAPVPEKDRAVITPLNKDAWITNPMKKNVSSTITCLIKAHYPGTYRPLDKHGKQVPEDEAVVIAHYHNFPAHTRITILKEFLLRFKFTDGREEDCARLFYRKAVERFSQALSHEKSEAKHSLEKHIENMRATELQQDGDAPSHDDFDVDDPQLWKAFPPYWIEQKWWDMLCDLWSDENVKKVSAQNRKNRMEGGGVHHTCGSRSVAMHKQAMIIENAGTDVDDIDVFECTHRHAKGKGQYANKKAEQLAVVYNDHVKEGENNQVDKQHVWVQLTKGRKRGRYYGLPGIIDRNHVGNSASAPSGSMETQPLYIQQQVQDIVQQAVTNAVNNAHQELASRIERLEQTVDKDKAETHSHDANGPSSSVVPEFLHALLMNGMNTTEEAPQAGHCGRTCENDDLWRF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0392500 | RBH | 0.000000 | 0.0 | 0.324302 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g22720 | RBH | 0.000000 | 0.432516 | 0.396400 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0392500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0006750 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0008820 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0007140 | SBH | 0.0 | 0.0 | 0.905333 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0008710 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0013080 | SBH | 0.0 | 0.0 | 0.598519 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0497300 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0031630 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0192600 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0008580 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0032080 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0032080 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0013840 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0013130 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G031840 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0031690 | RBH | 0.0 | 0.0 | 0.0 |
