Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_05G010250 | OGI:05034030 | 15/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr05:13409002-13410283 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGAATTTGGTAAATTTTATTTTGGCTTGAAGTACAATCTAAACAGTCCCTCGTAACCAAGATGATCACTCTAGTACTCCAGTGTCACATTACATGTTAAATAGAAAAGGAAGGAGAAATTAGTAGCACAGGAGGAGTGATCGGCTGTTCTCCTGCCACGTCACCGGAATCGGATCGCTAGTGGCTAGTGCACCTGGATGTTGACGACCTTGCCGCCGGAGGCCACCTTGGGGATGGTGAGGTAGAGCACGCCGTCCCTCACCTCCGCCGCGATCCGCTCCACCTCCACGTTCTCCGGCAGCTCCACCCGCGTCCTGTACCTCCCGAAGCTCGCCACCGGCCACGCCTCCCCCTCGTCCTCACCGTCAGCCGCCTCCACGGCCTCCCCATCCTTGGCCGCCTTCTCGGCGACCACCACCAGCTTCCGGTCCTGCACGCTCACCGTCACGTCCTCCCTCGTCATGCCCGGCATGTCGTACCGCACCAGGTACGCCCCGGCGCGCTCCTTGATCTCCCACGGCGTCCGCCCACGCCTGTAGGCGGCTGTGGCGGCGCCGTTGTCGACGGCGCGGGCAGCTGCCGGCGCCGCCGTCACCGCGGAGGCCGGCACGACGAGCATGCGGTCGCTGTCGGCGTCGCCGTCCATGATGCGCTCCATGGTCCGCATCATCTGGTCCAGCGTCCTCGCCTCCGGGAAGCTGTCCCATAACCCTGCCCATGTTCGCAAATGGAGTAATTAATTAGCCAAGCCAATTCTTTTTTACAGTTTTAACACTTTAGAAATCCGTAATGTAAATTCAATTAGTGAATTATAAGTAATCGAAAAAACAAGCCAAAAATGATGATAGCTAATCTCCTCCACCCAAACTCATATTGTCCAACATTGCAAACCACAACAACATTCTTTTGCGACAAAAGATGGTAAATAACCATAAACCACACGAAGCTCAATTATGTTAACACAAAATTGAAGACAAACACCAAAAGAGCTTTTGCTATACGTACCAAATGGCGTGGTTTGGATGACTCTCCTCCTGGCGCTGGGAGTCCCCTGCTGCTGCCGCGGTCTAGCCTTTGAGGCCCTCTGCAGATGGTCCAGGCTCTCGGTAGACCCGTTCCTCATGGACCGTACTCTCACCCAGCATCTGCTGGGCCGGCACGAAGCGCCGGTCCATGAGAGCCTGCCTGCTCTAGGAGCTTGAGCCACTGGGGATGTGGTGAATGGTTGCATCATCCCGCTCCGATTATGGATGGCTTTGCTGGGAGTACGAGCGTTGACTTTG
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| CDS seq | ATGATGCAACCATTCACCACATCCCCAGTGGCTCAAGCTCCTAGAGCAGGCAGGCTCTCATGGACCGGCGCTTCGTGCCGGCCCAGCAGATGCTGGGTGAGAGTACGGTCCATGAGGAACGGGTCTACCGAGAGCCTGGACCATCTGCAGAGGGCCTCAAAGGCTAGACCGCGGCAGCAGCAGGGGACTCCCAGCGCCAGGAGGAGAGTCATCCAAACCACGCCATTTGGGTTATGGGACAGCTTCCCGGAGGCGAGGACGCTGGACCAGATGATGCGGACCATGGAGCGCATCATGGACGGCGACGCCGACAGCGACCGCATGCTCGTCGTGCCGGCCTCCGCGGTGACGGCGGCGCCGGCAGCTGCCCGCGCCGTCGACAACGGCGCCGCCACAGCCGCCTACAGGCGTGGGCGGACGCCGTGGGAGATCAAGGAGCGCGCCGGGGCGTACCTGGTGCGGTACGACATGCCGGGCATGACGAGGGAGGACGTGACGGTGAGCGTGCAGGACCGGAAGCTGGTGGTGGTCGCCGAGAAGGCGGCCAAGGATGGGGAGGCCGTGGAGGCGGCTGACGGTGAGGACGAGGGGGAGGCGTGGCCGGTGGCGAGCTTCGGGAGGTACAGGACGCGGGTGGAGCTGCCGGAGAACGTGGAGGTGGAGCGGATCGCGGCGGAGGTGAGGGACGGCGTGCTCTACCTCACCATCCCCAAGGTGGCCTCCGGCGGCAAGGTCGTCAACATCCAGGTGCACTAG
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| Protein seq | MMQPFTTSPVAQAPRAGRLSWTGASCRPSRCWVRVRSMRNGSTESLDHLQRASKARPRQQQGTPSARRRVIQTTPFGLWDSFPEARTLDQMMRTMERIMDGDADSDRMLVVPASAVTAAPAAARAVDNGAATAAYRRGRTPWEIKERAGAYLVRYDMPGMTREDVTVSVQDRKLVVVAEKAAKDGEAVEAADGEDEGEAWPVASFGRYRTRVELPENVEVERIAAEVRDGVLYLTIPKVASGGKVVNIQVH |
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| Function | Small heat shock protein, chloroplastic [UniProtKB/Swiss-Prot:P09886] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_05G010250 | OsN22_05G010250_01 | Chr05 | 13409185 | 13410283 | - | NAM | ||
| CDS seq | ATGATGCAACCATTCACCACATCCCCAGTGGCTCAAGCTCCTAGAGCAGGCAGGCTCTCATGGACCGGCGCTTCGTGCCGGCCCAGCAGATGCTGGGTGAGAGTACGGTCCATGAGGAACGGGTCTACCGAGAGCCTGGACCATCTGCAGAGGGCCTCAAAGGCTAGACCGCGGCAGCAGCAGGGGACTCCCAGCGCCAGGAGGAGAGTCATCCAAACCACGCCATTTGGGTTATGGGACAGCTTCCCGGAGGCGAGGACGCTGGACCAGATGATGCGGACCATGGAGCGCATCATGGACGGCGACGCCGACAGCGACCGCATGCTCGTCGTGCCGGCCTCCGCGGTGACGGCGGCGCCGGCAGCTGCCCGCGCCGTCGACAACGGCGCCGCCACAGCCGCCTACAGGCGTGGGCGGACGCCGTGGGAGATCAAGGAGCGCGCCGGGGCGTACCTGGTGCGGTACGACATGCCGGGCATGACGAGGGAGGACGTGACGGTGAGCGTGCAGGACCGGAAGCTGGTGGTGGTCGCCGAGAAGGCGGCCAAGGATGGGGAGGCCGTGGAGGCGGCTGACGGTGAGGACGAGGGGGAGGCGTGGCCGGTGGCGAGCTTCGGGAGGTACAGGACGCGGGTGGAGCTGCCGGAGAACGTGGAGGTGGAGCGGATCGCGGCGGAGGTGAGGGACGGCGTGCTCTACCTCACCATCCCCAAGGTGGCCTCCGGCGGCAAGGTCGTCAACATCCAGGTGCACTAG
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| Protein seq | MMQPFTTSPVAQAPRAGRLSWTGASCRPSRCWVRVRSMRNGSTESLDHLQRASKARPRQQQGTPSARRRVIQTTPFGLWDSFPEARTLDQMMRTMERIMDGDADSDRMLVVPASAVTAAPAAARAVDNGAATAAYRRGRTPWEIKERAGAYLVRYDMPGMTREDVTVSVQDRKLVVVAEKAAKDGEAVEAADGEDEGEAWPVASFGRYRTRVELPENVEVERIAAEVRDGVLYLTIPKVASGGKVVNIQVH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_05G010250 | OsN22_05G010250_02 | Chr05 | 13409002 | 13409707 | - | IsoSeq | ||
| CDS seq | ATGGGGAGGCCGTGGAGGCGGCTGACGGTGAGGACGAGGGGGAGGCGTGGCCGGTGGCGAGCTTCGGGAGGTACAGGACGCGGGTGGAGCTGCCGGAGAACGTGGAGGTGGAGCGGATCGCGGCGG |
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| Protein seq | MGRPWRRLTVRTRGRRGRWRASGGTGRGWSCRRTWRWSGSRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.259813 | 0.877219 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g23140 | RBH | 0.000000 | 0.0 | 0.186159 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0010590 | RBH | 0.0 | 0.0 | 0.237691 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0010610 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0010540 | RBH | 0.0 | 0.0 | 0.917667 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0010610 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0192500 | RBH | 0.1831175 | 0.2958605 | 0.148884 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0201700 | RBH | 0.6333085 | 0.566219 | 0.2458565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0010530 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0010470 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0010600 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0010610 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0010630 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0010570 | RBH | 0.0 | 0.000000 | 14.237279 |
