Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os05g23140 OGI:05034030 | 15/16 Nipponbare | IRGSP 1.0 | MSU Chr05:13192487-13199560
Gene Symbol -
DNA seq

ATTAGAATTTGGTAAAATTTATTTTGGCTTGAAGTACAATCTAAACAGTCCCTCGTAACCAAGATGATCACTCTAGTACTCCAGTGTCACATTACATGTTAAATAGAAAAGGAAGGAGAAATTAGTAGCACAGGAGGAGTGATCGGCTGTTCTCCTGCCACGTCACCGGAATCGGATCGCTAGTGGCTAGTGCACCTGGATGTTGACGACCTTGCCGCCGGAGGCCACCTTGGGGATGGTGAGGTAGAGCACGCCGTCCCTCACCTCCGCCGCGATCCGCTCCACCTCCACGTTCTCCGGCAGCTCCACCCGCGTCCTGTACCTCCCGAAGCTCGCCGCCGGCCACGCCTCCCCCTCGTCCTCACCGTCAGCCGCCTCCACGGCCTCCCCATCCTTGGCCGCCTTCTCGGCGACCACCACCAGCTTCCGGTCCTGCACGCTCACCGTCACGTCCTCCCTCGTCATGCCCGGCATGTCGTACCGCACCAGGTACGCCCCGGCGCGCTCCTTGATCTCCCACGGCGTCCGCCCACGCCTGTAGGCGGCTGTGGCGGCGCCGTTGTCGACGGCGCGGGCAGCTGCCGGCGCCGCCGTCACCGCGGAGGCCGGCACGACGAGCATGCGGTCGCTGTCGGCGTCGCCGTCCATGATGCGCTCCATGGTCCGCATCATCTGGTCCAGCGTCCTCGCCTCCGGGAAGCTGTCCCATAACCCTGCCCATGTTCGCAAATGGAGTAATTAATTAGCCAAGCCAATTCTTTTTTACAGTTTTAACACTCTTTAGAAATCCGTTATGTAAATTCAATTAGTGAATTATAAGTAATCGAAAAAACAAGCCAAAAATGATGATAGCTAATCTCCTCCACCCAAACTCATATTGTCCAACATTGCAAACCACAACAACATTCTTTTGCGACAAAAGATGGTAAATTTTTTTTTTGACTAACTCACCGGGGGGGAGAGGTTCCCCACCTAAATTGTCATTGCATTAATTAAGGAAGAAATGTCTTATTACATCGGATGAAGAGTCTGTAGACTAGAAGAGAAAACACCTTTCCAAACATCTATTACAAATCTATCATCAGGTGTAAAAGTTTCAGCCCATAGGGAGGATTCCGAAATTCCGCGTTGCAAGCATGAAGCAATTGAAGGTGGTCTTCCTCGGAATACAACATCATGCCTGTGGTTCCACAGGACCCAAAAGCAGAGCATGAAGAAACTCTGAAAATGTCTTGTTGGGATAGTTGCTGGTGCCTTTAGTTGGGACAGGTACTTAGTCTCATTGATGATCGGTTGGATATGAAGTGCTTGCCAGAAACTGATAGCAAAAGGGCAGTTGAAGCTGAGGTGATCTGCTGTTTCATCAGTGGTGCTGCATATGTCACAGGTTGCTGTCTGTACTATTTTCTTTTTCAAGAGATTCAATTTTGTGGACAGTCGATCTCTGACTAGAAGCCAAGCAAAGAGCTTGATCTTTAATGGCATTCTGCAGTCCCAAATGAATTTCCAATTTGGTGAAGGAAAGCCAGGCGGAGACCTTAAATCATAGATTGTCTTGGTTGTTAAATTGCCAAGGCGATTGTTGAGCCGAGTATCCGATTCATTTGTCAAGGAAAAATTCTGAAGAATGGTTTGCAGTTCTTGTAGGTCGTTTTGCGCTGCAGATGAAAGCCTAGGGGTGAGAATATCGTAAATTCCGAAGGATAAAATTTGCTCAACAGTGGCTAAGTCGTCAGTTGAATGCGAGAAGAGAGATTCAAACTGTGCTGCAAGAGTCATATTGCCAGTCCAGCGATCATGCCAAAAGGATGTTCTCGAGCCATCCCCAATGTGCACCGTAGTTATCTTGAAAAGCTCTGGCAGCAGTTTCTGAAAGACACTCCAGTGTTGACCTAACGGTAGAGATTTTAATAGTGATCTTCCATCAAATTCTTTCCAAATCCAATTAGTCCAGGAGGAATTGTCTGAGAAAAGGTTGAAAAGTCTTTTGAGAAGAAGAGCTTCATTTTGAGTCTTTAAACTTTTGATTCCTAGTCCTCCCTTTTCTTTTGCGGTACAAACCTCATCCCAGGCCACTAAACACTTTGCTCCGGAGCAGGTGTCATCACCGGTCCAAAAAAAGGCTCGTCGCCGTTTATCAATTGCTTCTATTACCTTTGGTGGGAGTTTGAACGCGGACATTGCATAAACTGGAACACTGCTTAGCACTGCATTAACTAGGATTAGGCGTTCGGCCTGTGAAAGTAGAGATGCCTCCCAGCCTGTAAGAAAACTATCCACTTTGACCACAATTGGTTGTAGATCATTGTTGGTGAGTTTATGCAAGGATAGAGGTAGGCCCAAGTAAGACATTGGAAGCGATTCCAGCTTGCACTGTAGCAATTCCGACAATGACGATTCCTTTGAACGGTCGATATGAAGGGAGATCATTGTACTTTTGGCAAAGTTGATTTGTAATCCTGTGGCTTTGGAGAATTGCAGCAAGGTTGATCTAAGAGCAAGAACATCATCCTCCTCTGCTCGGCATATCACCAGCGTGTCATCGGCGTACTGAATGGTCGCACATGGTCTGTCCTGATAGATAGGGTGCCGAATCTGAAAGTTTTTCTCCAGCAGTCGTTGCAGCACATCTGCCACTAGAATAAATAAATAAGGAGATAAGGGGTCTCCCTGGCGAAGCCCTTTTTTGCAGTTAATCCATTTTCCTGGAATTCCATTAAGAAGCACTGCCGACTTTGATGTTTGAAGTAGGCTTTTGATCCAAGAAATCCAATTGTTTGGAAACCCCCGGACAGCCAAGATTTGGAACAGGCTCGTCCAGAGAACTGAATCGAAAGCTTTAGCAAAATCTAGCTTGATAATGAGGGTCTTGCATTTCCTTGCATGGCACGCTTGTATCAGTTCAGTGGCATAAATTAAATTTTCAGAGATGCATCTACCTTTAAGGAAGCCTGTCTGGTCCAGATGAATCATTCTTGTCAGAACTTTTTGAAGCCTATTTGCCAAAACCTTTGAAAGAATTTTTACTGAGCAGTTTTGGAGGGAGATTGGTCGATAGCCATCTACTGTATTCTCCTTGCCAGGTTTTGGAATTAGAACAATGTGAGCTCTGTTAATTCTTTCCAGTTGGACTGAATTTGAGCAGAAACTCGCAGCCAGCTTGATAATATCCTCCTTTATAGAATTCCAAGCTGAATTGTAGAAGCTTGGTCCGAAACCATCCGGTCCCGGTGCACTGTTGGAGTTCATGCCTTTAATTGATGTTATTATCTCTTCCGTAGAAAATTGCAATCCTTGCGAAGCCAAAAGATTATAGTCTCGTTCATCTTCTGAGTATAGTGTTGACAGATCGAAGTCCCACAACGGCTGACAGTCGGACCCTAGAAAATGTTGGAAGAAGGAGTGCAGAAGCAGAGCTTTTCCATTGTGATCTGCAATTTCTGACCCATTGTGCTTGATTGATCTGATCCTTGAATTCCTGTAATTTTTTGATGCATGAGCCTTGAAGAATGCCGAATTGTCAATTCCAATCTTTAGCCGCTTGACCTTTCCCCTTTGTTTCCAGTATGCAACCTTGCTTTGGATGGCCTGAAACAATTTCTCCTGTACAAGATTTCTTAGGCAGCGTTCCCCATCATTCAAAGGTCTGAGTTCTTCAATATAGTCGAGGAGATCAATTGTGAACTTACAGTCTTCATTGAGAGAACTACGTTTCCTGTGTTCTTTCATCCAAACTTTGATGATAGATCTTGTCTGTTTTAGCTTGGCAGCAAGGCAAGCAGCCGGATCATTCATATTGAGCTGTTGTGGCCACCTGTGCATGACTGAAGGAAGAAAATCTCGGTCCAGCAAAAGATGATTCTCAAAGCGGAAAGTTTTCGATTTTGGAATGGAAGTAGAAGCAGTGAGAAGAAGTGGAACATGGTCAGAGGTGGTTCTAGTGCAAGAAGAGAGGGAGGTGTTTGGGAGGGTGTTGTTCCAAGCATTGTTGAAGAAAGCTCGGTCTAGCCTTGCCAGGACTGGAACTTCTCTTTTGTTCGACCAGGTGTATAGTCTGTCTGGAAGGGGTAATTCAAACAGGCTTAGGGAGTTTATTGTTTGGTTGAAAGCAGCTGCAAGACCAGTTGAAAAGTTTTGGGAGTTCTTGTCGGAAGGGGATCTAGTAAGGTTGAAGTCTCCTATGAGAAGTCTAGGGCCCTGGATTAGGGGATCTATTTCTAAAAGCTCATGAAGGAAGTCTTGTTTTTGATCAAGCTCGGCTGGTCCATAGATGTTGGTTAAAGAAAAGGACAGGTCTGTGAAGGTTGAGGTGAAGGAGATTGTCAGCGAGAAGTGTCTGGAGATGAAAGAAGTTTTTGTAAAGTCAGCATTCCAGGCAGTAAGCATGCCCCCTCTAGAGCCATAAGAACCCACAAAATCATAATTAGCGAGGTTAGGAGGTAGAATAGTTTTTGCTTTTTCAGGTGGGATGTTTTGAAGTTTAGTTTCCTGAAGGAGAACAAAAGACGGGTTGCAATCTGAAATCGAATTTTTCACAATGTCACACTTGTTTTTGTCGCCCAAACCACGAACATTCCAGCAAAGAACAGAGAAAGAACGATTCATGAAATAATAATAGGTTCACCGAAATAGCACATGGCAGACCCAAGAGCAAAAGGCCACAGCATCACATAATCCAGCTTACATGGAGTAAATAGACTGAAAGAGAACATAACGAAGGGAGAGAAGACACTAGAGAACTGAAGAAGAGCTGAAAGAACATAACAAAGGGAGAGAAGCAGACGCATGCTGGGCTTGTCCATCCCATTGAGGGTATTGATCACCATCAGTCCACTGACGAGAACACCTTTCGAAGCTGGGCAATATCGTGATCATTCAAACTGCAAGCAATAGCCAGATCTTCCAACGCTTTCGGAGTAGTCTTGAAGTTAAGGTCGAGCAGATTGTGCTTGTGTACCGCGTCATTGAGTTTGGATGAGCATTTGGCAAGTTGTTCCTTTAGTTTTTTCGCTCTGGCTGCTTTGGATTCCATTGAAATGTACAAATGTCCTTCTTTGGCCGCCAGTCTTTCGCTATATCGCCTCTTGACATCTGAATCAATTGTCCGTTTCTTCTGCCTTCTGCGTTTCCGGGCTGAAAGCTCATGTTCATTTTCAGTATCTGAGGGCACGAGGTCCTGGAGGCAGTCATGGATACTGGAGGGAGCAGAATGGATTGACGGAGGGACAAAAAATTCAGGTGTATCAGAGATTTCCTCAATGAAGACAGTGCTAGCTGCAGGCAGAATCGCAAGCAATCTTCCCCTGTTCTGAAGTCTTTGGTTGTTAGAGATTTGATTTGAAGGAGCCTGATTCAAGTTGCCCAACTCTGCCTCTGGTCCAACAGTTGGTCCTGAACGGGGAGGATCCAGCTGATGAGGGAATAGAAACTGTTCATAATGCTTAATGTAATTTCCATCTTCATCCACGTTCATGGCCAGCTCCCATGTTCTTAGAACCCTGACATAGACAGTGCAGACAATCCCCAAATTGTAGCGCAGCCGAAATCTAGGGCTCATCCTCTTGCCAGGATAGTGCAGAACAACAAGACGCAGAGAGGATTGTTCGTCCCCATAGAGGCATTGATCATCTACTTCCATCAGCTCGCCGTAATTTTCAAAAGCATTTCTTATCTTGTTAGGGAACAACATCTCTGGCGGGAAGTCAATACAGTCTAGTTCGGACAGCATAGTGTTGTGTTGAATGAAGCGAGCCGCACTGTCCTCAGGCCGTTCAAGCCTAACCAAGTGGCCTTCAGCTGTAAGATTCTCCTGGTGATCAACTGCAATGTCTCTGTCCTGACTGTGAATAAATCTTAGAGTCATTGCACCTCTACAAGCTGAGATGAGAGTGAACTGAAAACGAGGGTGAGCATCCTGCATTGCTTTTCGAATTACTCTGCCAGGGCATTCACATGGAGGGGTAACATAAGCAGTGGCGTAATGAGCAGTTACTCTCATGTCAACAAAGGGGATAAAGATATCAAGAATATCATCGTCACTGTCTCCTGATATGTTAACTGGATCTGGTTCCCCAAAAGCAAAGTCCTGCGCAGCAGTAGTGTCATCGGAAGTAATGACTGGCACCCGACCTGGAGAGAGTGAAGCAGAGTGAATAGATCCTTCTGGACTTAGACCTGCTAGAGCTCTTCTGATTTGCTCAGCAGCTGAGGGGCCACTCAATGTCGGAGGTGGCGATCTCGTGCTATCAGGATCCTGAGGTGGAGACAGAACTGGGTTGGCAGACAACTGTTCCGAACAGACGAAGATATCCCTAGGTTCCTGTGGGGGGACCGAGCTTGGCTGCCTCGAAGATGGACAGGCGCCGTACCAAGCGAGGAAACCTTTATTCTTGCATCTGAGACGAGGTGGCATACTGCTAAGGTTGACCGCTGGCGAGAGATCTTCGCTGACAGAGGACGGAACAACAACGGACTCAACAGTAGCATGAGCAACTTCAGCAACCGCAGCAGCTCTTGTAGGCATAACAGACACCAAGGAAACAGTCGCAGGTACCACTTCAGTTGAGACAGTCTCTAGATCATTAACAGCACATGCAAGAACTGGAACTAAGGCAGCCACTGAGATTGAACTATCTTGCACACAGACTAGGGCATTTCTTACGTCCGGTAAAGGAGAAGCAACAGAAGAAGTGACCGCATTCTCAAACCAAAAACCACACGAAGCTCAATTATGTTAACACAAAATTGAAGACAAACACCAAAAGAGCTTTTGCTATACGTACCAAATGGCGTGGTTTGGATGACTCTCCTCCTGGCGCTGGGAGTCCCCTGCTGCTGCCGCGGTCTAGCCTTTGAGGCCCTCTGCAGATGGTCCAGGCTCTCGGTAGACCCGTTCCTCATGGACCGTACTCTCACCCAGCATCTGCTGGGCCGGCACGAAGCGCCGGTCCATGAGAGCCTGCCTGCTCTAGGAGCGTGAGCCACTGGGGATGTGGTGAATGGTTGCATCATCCCGCTCCGATTATGGATGGCTTTGCTGGGAGTACGAGCGTTGACTTTGTGAGACGAGAGTGC

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CDS seq

ATGATGCAACCATTCACCACATCCCCAGTGGCTCACGCTCCTAGAGCAGGCAGGCTCTCATGGACCGGCGCTTCGTGCCGGCCCAGCAGATGCTGGGTGAGAGTACGGTCCATGAGGAACGGGTCTACCGAGAGCCTGGACCATCTGCAGAGGGCCTCAAAGGCTAGACCGCGGCAGCAGCAGGGGACTCCCAGCGCCAGGAGGAGAGTCATCCAAACCACGCCATTTGGGTTATGGGACAGCTTCCCGGAGGCGAGGACGCTGGACCAGATGATGCGGACCATGGAGCGCATCATGGACGGCGACGCCGACAGCGACCGCATGCTCGTCGTGCCGGCCTCCGCGGTGACGGCGGCGCCGGCAGCTGCCCGCGCCGTCGACAACGGCGCCGCCACAGCCGCCTACAGGCGTGGGCGGACGCCGTGGGAGATCAAGGAGCGCGCCGGGGCGTACCTGGTGCGGTACGACATGCCGGGCATGACGAGGGAGGACGTGACGGTGAGCGTGCAGGACCGGAAGCTGGTGGTGGTCGCCGAGAAGGCGGCCAAGGATGGGGAGGCCGTGGAGGCGGCTGACGGTGAGGACGAGGGGGAGGCGTGGCCGGCGGCGAGCTTCGGGAGGTACAGGACGCGGGTGGAGCTGCCGGAGAACGTGGAGGTGGAGCGGATCGCGGCGGAGGTGAGGGACGGCGTGCTCTACCTCACCATCCCCAAGGTGGCCTCCGGCGGCAAGGTCGTCAACATCCAGGTGCACTAG

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Protein seq

MMQPFTTSPVAHAPRAGRLSWTGASCRPSRCWVRVRSMRNGSTESLDHLQRASKARPRQQQGTPSARRRVIQTTPFGLWDSFPEARTLDQMMRTMERIMDGDADSDRMLVVPASAVTAAPAAARAVDNGAATAAYRRGRTPWEIKERAGAYLVRYDMPGMTREDVTVSVQDRKLVVVAEKAAKDGEAVEAADGEDEGEAWPAASFGRYRTRVELPENVEVERIAAEVRDGVLYLTIPKVASGGKVVNIQVH

Function Small heat shock protein, chloroplastic [UniProtKB/Swiss-Prot:P09886]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os05g23140 LOC_Os05g23140.1 Chr05 13192487 13199560 - MSU_osa1r7
CDS seq

ATGATGCAACCATTCACCACATCCCCAGTGGCTCACGCTCCTAGAGCAGGCAGGCTCTCATGGACCGGCGCTTCGTGCCGGCCCAGCAGATGCTGGGTGAGAGTACGGTCCATGAGGAACGGGTCTACCGAGAGCCTGGACCATCTGCAGAGGGCCTCAAAGGCTAGACCGCGGCAGCAGCAGGGGACTCCCAGCGCCAGGAGGAGAGTCATCCAAACCACGCCATTTGGGTTATGGGACAGCTTCCCGGAGGCGAGGACGCTGGACCAGATGATGCGGACCATGGAGCGCATCATGGACGGCGACGCCGACAGCGACCGCATGCTCGTCGTGCCGGCCTCCGCGGTGACGGCGGCGCCGGCAGCTGCCCGCGCCGTCGACAACGGCGCCGCCACAGCCGCCTACAGGCGTGGGCGGACGCCGTGGGAGATCAAGGAGCGCGCCGGGGCGTACCTGGTGCGGTACGACATGCCGGGCATGACGAGGGAGGACGTGACGGTGAGCGTGCAGGACCGGAAGCTGGTGGTGGTCGCCGAGAAGGCGGCCAAGGATGGGGAGGCCGTGGAGGCGGCTGACGGTGAGGACGAGGGGGAGGCGTGGCCGGCGGCGAGCTTCGGGAGGTACAGGACGCGGGTGGAGCTGCCGGAGAACGTGGAGGTGGAGCGGATCGCGGCGGAGGTGAGGGACGGCGTGCTCTACCTCACCATCCCCAAGGTGGCCTCCGGCGGCAAGGTCGTCAACATCCAGGTGCACTAG

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Protein seq

MMQPFTTSPVAHAPRAGRLSWTGASCRPSRCWVRVRSMRNGSTESLDHLQRASKARPRQQQGTPSARRRVIQTTPFGLWDSFPEARTLDQMMRTMERIMDGDADSDRMLVVPASAVTAAPAAARAVDNGAATAAYRRGRTPWEIKERAGAYLVRYDMPGMTREDVTVSVQDRKLVVVAEKAAKDGEAVEAADGEDEGEAWPAASFGRYRTRVELPENVEVERIAAEVRDGVLYLTIPKVASGGKVVNIQVH

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Gene Transcript Chromosome Start End Strand Source
LOC_Os05g23140 LOC_Os05g23140.2 Chr05 13198377 13199560 - MSU_osa1r7
CDS seq

ATGATGCAACCATTCACCACATCCCCAGTGGCTCACGCTCCTAGAGCAGGCAGGCTCTCATGGACCGGCGCTTCGTGCCGGCCCAGCAGATGCTGGGTGAGAGTACGGTCCATGAGGAACGGGTCTACCGAGAGCCTGGACCATCTGCAGAGGGCCTCAAAGGCTAGACCGCGGCAGCAGCAGGGGACTCCCAGCGCCAGGAGGAGAGTCATCCAAACCACGCCATTTGAGCTGCTGCGGTTGCTGAAGTTGCTCATGCTACTGTTGAGTCCGTTGTTGTTCCGTCCTCTGTCAGCGAAGATCTCTCGCCAGCGGTCAACCTTAGCAGTATGCCACCTCGTCTCAGATGCAAGAATAAAGGTTTCCTCGCTTGGTACGGCGCCTGTCCATCTTCGAGGCAGCCAAGCTCGGTCCCCCCACAGGAACCTAGGGATATCTTCGTCTGTTCGGAACAGTTGTCTGCCAACCCAGTTCTGTCTCCACCTCAGGATCCTGATAGCACGAGATCGCCACCTCCGACATTGA

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Protein seq

MMQPFTTSPVAHAPRAGRLSWTGASCRPSRCWVRVRSMRNGSTESLDHLQRASKARPRQQQGTPSARRRVIQTTPFELLRLLKLLMLLLSPLLFRPLSAKISRQRSTLAVCHLVSDARIKVSSLGTAPVHLRGSQARSPHRNLGISSSVRNSCLPTQFCLHLRILIARDRHLRH

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.000000 0.0 0.186159

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU NA NA NA NA NA
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_05g0010590 RBH 0.0 0.0 0.237691
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_05g0010610 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_05g0010540 RBH 0.0 0.0 0.917667
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_05g0010610 RBH 0.0 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU OsMH63_05G0192500 RBH 0.1831175 0.2958605 0.148884
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_05G0201700 RBH 0.6333085 0.566219 0.2458565
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_05g0010530 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_05g0010470 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_05g0010600 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_05g0010610 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_05g0010630 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_05G010250 RBH 0.0 1.259813 0.877219
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_05g0010570 RBH 0.0 0.000000 14.237279
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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