Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_04G003930 | OGI:04014620 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr04:6044156-6045337 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGTTCCTACTAATAGAAGTTGCATCGGAAACATTGCTCTGGGCATTGATCTTCGGGGAGGGAATGGCAATCCTCTTGACAGCTATGGCAGGTGGGATCTTCTTGCTCATGGGATTACCGAGCGGTGATTTACAGACGGGCCTCCGGATTGGAGCAATATGAGGTGCATTGCTAGAACTGACAACAGTGGGGCGACCTGGTGCTGACAACACTTGCTGCGGGTGCTGACGAAGGAGCGTACTGCCTCTTTGTAGCTGTAGCGAGCTGTTGTTCTCCTGGCATTGCTTACCCTGCTGGCGCTGGTGCTGTAGGCTTGAAACGATGGCCGGTGGAACAATGCGGCCTCTGACGGTGCCCTTGACGATGATCCGTTGAGGCGGAGGTTGCACATTCAGGTGTCGATTGGTGTCGTGGGTAGTGCTGGTAACTTGCGAATAACGACGAACTGCCTTTGCTGCTATTGGAAGAGGACAATCACTGAAACAATGTCCTGGCTTACGACAGTTGCGACAGAATCGACTTGCTTGGTCCCGGGGTGCAGGTTTCTGATTATGCACTTTGGCAGCTGAAACTGGAACAAGCAGGGATTTATGAACATCCCTGGCGACATTGCTTCTTCCATGGTTGGCTTCCACTGGAGCTGTGGTTGGTGGAAGAGCAGAAGGATTGTGACTGCTGTTGTCGACTGCCATAGGTTGACGAATGGGTTGCACGGTTGTCCCTTGTTCTTTCTTGGTCAAAGCTAGGACTGAGTTCCACTGACAATCCTTAGGCACATGCTCTGTTCCCTCACACAGGAAACATGTTACCTTCCTCAAAGGGCATTCATCTGAGTAATGGGTGTATTCACCACAGCGGCATGTGGGGAGGCATAAACTAGCAGTGTGTCCGACTATCCCACATCTAGTACATGCTTTGAACTCCAATCCTCTTTCCATGAAACTGTTAAGGGTCGCCTCATCCTCATCATCATCATCATCATCATCATCGTCGTCATCAGTAGAGAACCGTTCTCCTGATATATCATCTTCGGGTCTGGGCGGACCGTACTTTATGAGATGCCGGGTTAGCTGGCGTGCTCCACGGAAGATATTTCTTCCTCTCTGACGCTTGGGTATCCTTGCTGCATCTTCAGGAGTAAATTCTGAACTGGTGATGATCATGGTCCTGCCATTATCCAT
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| CDS seq | ATGGATAATGGCAGGACCATGATCATCACCAGTTCAGAATTTACTCCTGAAGATGCAGCAAGGATACCCAAGCGTCAGAGAGGAAGAAATATCTTCCGTGGAGCACGCCAGCTAACCCGGCATCTCATAAAGTACGGTCCGCCCAGACCCGAAGATGATATATCAGGAGAACGGTTCTCTACTGATGACGACGATGATGATGATGATGATGATGATGAGGATGAGGCGACCCTTAACAGTTTCATGGAAAGAGGATTGGAGTTCAAAGCATGTACTAGATGTGGGATAGTCGGACACACTGCTAGTTTATGCCTCCCCACATGCCGCTGTGGTGAATACACCCATTACTCAGATGAATGCCCTTTGAGGAAGGTAACATGTTTCCTGTGTGAGGGAACAGAGCATGTGCCTAAGGATTGTCAGTGGAACTCAGTCCTAGCTTTGACCAAGAAAGAACAAGGGACAACCGTGCAACCCATTCGTCAACCTATGGCAGTCGACAACAGCAGTCACAATCCTTCTGCTCTTCCACCAACCACAGCTCCAGTGGAAGCCAACCATGGAAGAAGCAATGTCGCCAGGGATGTTCATAAATCCCTGCTTGTTCCAGTTTCAGCTGCCAAAGTGCATAATCAGAAACCTGCACCCCGGGACCAAGCAAGTCGATTCTGTCGCAACTGTCGTAAGCCAGGACATTGTTTCAGTGATTGTCCTCTTCCAATAGCAGCAAAGGCAGTTCGTCGTTATTCGCAAGTTACCAGCACTACCCACGACACCAATCGACACCTGAATGTGCAACCTCCGCCTCAACGGATCATCGTCAAGGGCACCGTCAGAGGCCGCATTGTTCCACCGGCCATCGTTTCAAGCCTACAGCACCAGCGCCAGCAGGGTAAGCAATGCCAGGAGAACAACAGCTCGCTACAGCTACAAAGAGGCAGTACGCTCCTTCGTCAGCACCCGCAGCAAGTGTTGTCAGCACCAGGTCGCCCCACTGTTGTCAGTTCTAGCAATGCACCTCATATTGCTCCAATCCGGAGGCCCGTCTGTAAATCACCGCTCGGTAATCCCATGAGCAAGAAGATCCCACCTGCCATAGCTGTCAAGAGGATTGCCATTCCCTCCCCGAAGATCAATGCCCAGAGCAATGTTTCCGATGCAACTTCTATTAGTAGGAACTAA
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| Protein seq | MDNGRTMIITSSEFTPEDAARIPKRQRGRNIFRGARQLTRHLIKYGPPRPEDDISGERFSTDDDDDDDDDDDEDEATLNSFMERGLEFKACTRCGIVGHTASLCLPTCRCGEYTHYSDECPLRKVTCFLCEGTEHVPKDCQWNSVLALTKKEQGTTVQPIRQPMAVDNSSHNPSALPPTTAPVEANHGRSNVARDVHKSLLVPVSAAKVHNQKPAPRDQASRFCRNCRKPGHCFSDCPLPIAAKAVRRYSQVTSTTHDTNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGSTLLRQHPQQVLSAPGRPTVVSSSNAPHIAPIRRPVCKSPLGNPMSKKIPPAIAVKRIAIPSPKINAQSNVSDATSISRN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_04G003930 | OsN22_04G003930_01 | Chr04 | 6044156 | 6045337 | - | NAM | ||
| CDS seq | ATGGATAATGGCAGGACCATGATCATCACCAGTTCAGAATTTACTCCTGAAGATGCAGCAAGGATACCCAAGCGTCAGAGAGGAAGAAATATCTTCCGTGGAGCACGCCAGCTAACCCGGCATCTCATAAAGTACGGTCCGCCCAGACCCGAAGATGATATATCAGGAGAACGGTTCTCTACTGATGACGACGATGATGATGATGATGATGATGATGAGGATGAGGCGACCCTTAACAGTTTCATGGAAAGAGGATTGGAGTTCAAAGCATGTACTAGATGTGGGATAGTCGGACACACTGCTAGTTTATGCCTCCCCACATGCCGCTGTGGTGAATACACCCATTACTCAGATGAATGCCCTTTGAGGAAGGTAACATGTTTCCTGTGTGAGGGAACAGAGCATGTGCCTAAGGATTGTCAGTGGAACTCAGTCCTAGCTTTGACCAAGAAAGAACAAGGGACAACCGTGCAACCCATTCGTCAACCTATGGCAGTCGACAACAGCAGTCACAATCCTTCTGCTCTTCCACCAACCACAGCTCCAGTGGAAGCCAACCATGGAAGAAGCAATGTCGCCAGGGATGTTCATAAATCCCTGCTTGTTCCAGTTTCAGCTGCCAAAGTGCATAATCAGAAACCTGCACCCCGGGACCAAGCAAGTCGATTCTGTCGCAACTGTCGTAAGCCAGGACATTGTTTCAGTGATTGTCCTCTTCCAATAGCAGCAAAGGCAGTTCGTCGTTATTCGCAAGTTACCAGCACTACCCACGACACCAATCGACACCTGAATGTGCAACCTCCGCCTCAACGGATCATCGTCAAGGGCACCGTCAGAGGCCGCATTGTTCCACCGGCCATCGTTTCAAGCCTACAGCACCAGCGCCAGCAGGGTAAGCAATGCCAGGAGAACAACAGCTCGCTACAGCTACAAAGAGGCAGTACGCTCCTTCGTCAGCACCCGCAGCAAGTGTTGTCAGCACCAGGTCGCCCCACTGTTGTCAGTTCTAGCAATGCACCTCATATTGCTCCAATCCGGAGGCCCGTCTGTAAATCACCGCTCGGTAATCCCATGAGCAAGAAGATCCCACCTGCCATAGCTGTCAAGAGGATTGCCATTCCCTCCCCGAAGATCAATGCCCAGAGCAATGTTTCCGATGCAACTTCTATTAGTAGGAACTAA
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| Protein seq | MDNGRTMIITSSEFTPEDAARIPKRQRGRNIFRGARQLTRHLIKYGPPRPEDDISGERFSTDDDDDDDDDDDEDEATLNSFMERGLEFKACTRCGIVGHTASLCLPTCRCGEYTHYSDECPLRKVTCFLCEGTEHVPKDCQWNSVLALTKKEQGTTVQPIRQPMAVDNSSHNPSALPPTTAPVEANHGRSNVARDVHKSLLVPVSAAKVHNQKPAPRDQASRFCRNCRKPGHCFSDCPLPIAAKAVRRYSQVTSTTHDTNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGSTLLRQHPQQVLSAPGRPTVVSSSNAPHIAPIRRPVCKSPLGNPMSKKIPPAIAVKRIAIPSPKINAQSNVSDATSISRN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.239811 | 2.758251 | 2.939431 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g60560 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004790 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0005160 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0004700 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0003800 | RBH | 0.0 | 0.049904 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0004920 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0188500 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0004840 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0078600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002730 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0005100 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004050 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0001580 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0003740 | RBH | 0.0 | 1.551085 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G014290 | RBH | 0.066153 | 0.0 | 0.149723 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002800 | RBH | 0.0 | 0.0 | 0.0 |
