Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0002730 | OGI:04014620 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:4872841-4873533 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaactcctactagctgaagcttcactgggaacgttgccctgcttgctgatctttgatggtggagtggtaactgtcttgacagctgtaacaggtaggatcttcttgcccgtggggttaccaagcggtgatttgctgatgagcctctggattagagcaatacgaggtgcattgctagaactgacaacagttgggcgacctggtgctgacaacacttgctgcgggtgctgacgaaggaccgtactgcctctttgtagctgtagcgagctgttgttctCctggcattgcttaccctgctggcgttggtgttgtaggcctgaaaccgttgccggtggaacaatgcggcctttgacggtgcccttgacgataatccgttggggcggaggttgcacattcaggtgtcgattggtgtcgtgggcagtgctggtaacttgtgaatcacgacgaactgcctttgctgctcttggaagaggacaatccctgaaatgatgtcctggcttacgacagttgcgacagaatcgacttgcttggcctcggggtgcaggcttctgattatgcactttggcagctgaaactggaacacacagtgatttacgaacctccctggcgacgttgcttcctccatggttggcttccactggagttgtggttgctgaaagagtagaagggttgagactgttgttgtcgaccgccat
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| CDS seq | atggcggtcgacaacaacagtctcaacccttctactctttcagcaaccacaactccagtggaagccaaccatggaggaagcaacgtcgccagggaggttcgtaaatcactgtgtgttccagtttcagctgccaaagtgcataatcagaagcctgcaccccgaggccaagcaagtcgattctgtcgcaactgtcgtaagccaggacatcatttcagggattgtcctcttccaagagcagcaaaggcagttcgtcgtgattcacaagttaccagcactgcccacgacaccaatcgacacctgaatgtgcaacctccgccccaacggattatcgtcaagggcaccgtcaaaggccgcattgttccaccggcaacggtttcaggcctacaacaccaacgccagcagggtaagcaatgccagGagaacaacagctcgctacagctacaaagaggcagtacggtccttcgtcagcacccgcagcaagtgttgtcagcaccaggtcgcccaactgttgtcagttctagcaatgcacctcgtattgctctaatccagaggctcatcagcaaatcaccgcttggtaaccccacgggcaagaagatcctacctgttacagctgtcaagacagttaccactccaccatcaaagatcagcaagcagggcaacgttcccagtgaagcttcagctagtaggagttaa
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| Protein seq | MAVDNNSLNPSTLSATTTPVEANHGGSNVAREVRKSLCVPVSAAKVHNQKPAPRGQASRFCRNCRKPGHHFRDCPLPRAAKAVRRDSQVTSTAHDTNRHLNVQPPPQRIIVKGTVKGRIVPPATVSGLQHQRQQGKQCQENNSSLQLQRGSTVLRQHPQQVLSAPGRPTVVSSSNAPRIALIQRLISKSPLGNPTGKKILPVTAVKTVTTPPSKISKQGNVPSEASASRS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0002730 | OsLima_04g0002730.01 | Chr04 | 4872841 | 4873533 | - | NAM | ||
| CDS seq | atggcggtcgacaacaacagtctcaacccttctactctttcagcaaccacaactccagtggaagccaaccatggaggaagcaacgtcgccagggaggttcgtaaatcactgtgtgttccagtttcagctgccaaagtgcataatcagaagcctgcaccccgaggccaagcaagtcgattctgtcgcaactgtcgtaagccaggacatcatttcagggattgtcctcttccaagagcagcaaaggcagttcgtcgtgattcacaagttaccagcactgcccacgacaccaatcgacacctgaatgtgcaacctccgccccaacggattatcgtcaagggcaccgtcaaaggccgcattgttccaccggcaacggtttcaggcctacaacaccaacgccagcagggtaagcaatgccagGagaacaacagctcgctacagctacaaagaggcagtacggtccttcgtcagcacccgcagcaagtgttgtcagcaccaggtcgcccaactgttgtcagttctagcaatgcacctcgtattgctctaatccagaggctcatcagcaaatcaccgcttggtaaccccacgggcaagaagatcctacctgttacagctgtcaagacagttaccactccaccatcaaagatcagcaagcagggcaacgttcccagtgaagcttcagctagtaggagttaa
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| Protein seq | MAVDNNSLNPSTLSATTTPVEANHGGSNVAREVRKSLCVPVSAAKVHNQKPAPRGQASRFCRNCRKPGHHFRDCPLPRAAKAVRRDSQVTSTAHDTNRHLNVQPPPQRIIVKGTVKGRIVPPATVSGLQHQRQQGKQCQENNSSLQLQRGSTVLRQHPQQVLSAPGRPTVVSSSNAPRIALIQRLISKSPLGNPTGKKILPVTAVKTVTTPPSKISKQGNVPSEASASRS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g60560 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004790 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0016410 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0004700 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0003800 | RBH | 0.0 | 0.049904 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0005660 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0160800 | SBH | 0.000977 | 0.034923 | 0.014116 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0005630 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0497100 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0016240 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0004960 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0002800 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0005350 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005710 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G003930 | RBH | 0.239811 | 2.758251 | 2.939431 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002800 | RBH | 0.0 | 0.0 | 0.0 |
