Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_04G001220 | OGI:04006530 | 4/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr04:1587978-1589377 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGAATGCCGTAGTCGTGCAACCATGGAGGTCACTCTTTCTGCATTCTATTGTTTCTCCTGTTGATGGATTGTGCAATGCTATCATATCGTGTATATTATCTTCCCCATGCAGAATTGTTCGGTTCCACGATATACAAATGGATCACATACACTGGAAATGGTGGATTGTCCGTGCGAGGGTCATCAAGAAAGGACATTTGCAAGAGAATTATTACGGCGATCTACAAATTCGGCTAATACTAATTGATGAATTGGTAAGTCAAAATGATTTTTCAATCTTCTTTTTCAAAATTTTAGATCTAATATGTAGTTTATTTCCACTGTGACTCACTGTATGTAGCAAGCCTCTCAGTGCACCTCAGCCAATCAAATCACGCCGAAGCTAAAATCTTTATATTTATTGATTGATTGATTTTAACGACAATAATTTTTAGTGTCTTATAGTCTTACATCTCATAACATGTGTAGGGCACTAAGATGGAGGCAATTGTTTACCGTCGTCAAGCTGAGCATTTCAACCAGCTTTTAAGATGTGGATCTGTTTATGATTTCTATAACGTCGGGTTTGATCCGACAGAAATGATCGTGCATCTAAGATTTAAGATAAGATCTCAGTTCTGCATGATTCTCAATAATGCAACAACTACCCGCACGCCTCATGGTCCTGTCCACATGCTACGTTGTCCATGGCGTTTTCCAGAATATGATGATATTTTTTTGGCAAGGCACAATTCTTTAGTAGGTATATTGTTTGATTCGGTACTGACAAAAATACCAATCTTTGTTTAGTTGCTAGCAAATGAAAAACTAATGTGTCTATGGGTTGTGCAGATGTCATTGGATTAGTTGTGCATGTCGGGGACATTGAGTTCAGGAGTTTGTATTTGCGTCGGACGCCGACAAGGATAATCGCGCTGGTTAATCCTAGGTATGACATGCTCCATTTCTTTACATGTATTAATTAATTGAGATCACACAACACTCATGTTGCATATAATTTTTGTAAATCAGGTTGCAGATAATTTTCGTTCGTGTATGGGACCAACAACTTACCCGCAACTTGACTAGGTGGCGCTCAGCACGGACACATTTCGATTGTTTTGTGGCTACGCTGACGAGGGTGGACAGAAGAGCAGGTAAGGAAGCCCCCCTCTATTTCTCTAACATATTTGCCACCGTGATAAATCACATATTTTAAACTAACTGACATTTTCCTTTTGTAGATGAACTATCAACTACTTATGAATCTGACATAATTTTTAATCCTGATTCAGCATCAGCAAATGAATTCAATGTTTTGCGCCAGGCATTAGCAGTATCACCTTCTAATGTTCAGGAGCAGGTTGAAGAGTCTATCGCTAGAAGAAACCTTCATAATTATCAACGCCAAAACTAG
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| CDS seq | ATGGAGAATGCCGTAGTCGTGCAACCATGGAGGTCACTCTTTCTGCATTCTATTGTTTCTCCTGTTGATGGATTGTGCAATGCTATCATATCGTGTATATTATCTTCCCCATGCAGAATTGTTCGGTTCCACGATATACAAATGGATCACATACACTGGAAATGGTGGATTGTCCGTGCGAGGGTCATCAAGAAAGGACATTTGCAAGAGAATTATTACGGCGATCTACAAATTCGGCTAATACTAATTGATGAATTGGGCACTAAGATGGAGGCAATTGTTTACCGTCGTCAAGCTGAGCATTTCAACCAGCTTTTAAGATGTGGATCTGTTTATGATTTCTATAACGTCGGGTTTGATCCGACAGAAATGATCGTGCATCTAAGATTTAAGATAAGATCTCAGTTCTGCATGATTCTCAATAATGCAACAACTACCCGCACGCCTCATGGTCCTGTCCACATGCTACGTTGTCCATGGCGTTTTCCAGAATATGATGATATTTTTTTGGCAAGGCACAATTCTTTAGTAGATGTCATTGGATTAGTTGTGCATGTCGGGGACATTGAGTTCAGGAGTTTGTATTTGCGTCGGACGCCGACAAGGATAATCGCGCTGGTTAATCCTAGGTTGCAGATAATTTTCGTTCGTGTATGGGACCAACAACTTACCCGCAACTTGACTAGGTGGCGCTCAGCACGGACACATTTCGATTGTTTTGTGGCTACGCTGACGAGGGTGGACAGAAGAGCAGATGAACTATCAACTACTTATGAATCTGACATAATTTTTAATCCTGATTCAGCATCAGCAAATGAATTCAATGTTTTGCGCCAGGCATTAGCAGTATCACCTTCTAATGTTCAGGAGCAGGTTGAAGAGTCTATCGCTAGAAGAAACCTTCATAATTATCAACGCCAAAACTAG
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| Protein seq | MENAVVVQPWRSLFLHSIVSPVDGLCNAIISCILSSPCRIVRFHDIQMDHIHWKWWIVRARVIKKGHLQENYYGDLQIRLILIDELGTKMEAIVYRRQAEHFNQLLRCGSVYDFYNVGFDPTEMIVHLRFKIRSQFCMILNNATTTRTPHGPVHMLRCPWRFPEYDDIFLARHNSLVDVIGLVVHVGDIEFRSLYLRRTPTRIIALVNPRLQIIFVRVWDQQLTRNLTRWRSARTHFDCFVATLTRVDRRADELSTTYESDIIFNPDSASANEFNVLRQALAVSPSNVQEQVEESIARRNLHNYQRQN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_04G001220 | OsN22_04G001220_01 | Chr04 | 1587978 | 1589377 | + | NAM | ||
| CDS seq | ATGGAGAATGCCGTAGTCGTGCAACCATGGAGGTCACTCTTTCTGCATTCTATTGTTTCTCCTGTTGATGGATTGTGCAATGCTATCATATCGTGTATATTATCTTCCCCATGCAGAATTGTTCGGTTCCACGATATACAAATGGATCACATACACTGGAAATGGTGGATTGTCCGTGCGAGGGTCATCAAGAAAGGACATTTGCAAGAGAATTATTACGGCGATCTACAAATTCGGCTAATACTAATTGATGAATTGGGCACTAAGATGGAGGCAATTGTTTACCGTCGTCAAGCTGAGCATTTCAACCAGCTTTTAAGATGTGGATCTGTTTATGATTTCTATAACGTCGGGTTTGATCCGACAGAAATGATCGTGCATCTAAGATTTAAGATAAGATCTCAGTTCTGCATGATTCTCAATAATGCAACAACTACCCGCACGCCTCATGGTCCTGTCCACATGCTACGTTGTCCATGGCGTTTTCCAGAATATGATGATATTTTTTTGGCAAGGCACAATTCTTTAGTAGATGTCATTGGATTAGTTGTGCATGTCGGGGACATTGAGTTCAGGAGTTTGTATTTGCGTCGGACGCCGACAAGGATAATCGCGCTGGTTAATCCTAGGTTGCAGATAATTTTCGTTCGTGTATGGGACCAACAACTTACCCGCAACTTGACTAGGTGGCGCTCAGCACGGACACATTTCGATTGTTTTGTGGCTACGCTGACGAGGGTGGACAGAAGAGCAGATGAACTATCAACTACTTATGAATCTGACATAATTTTTAATCCTGATTCAGCATCAGCAAATGAATTCAATGTTTTGCGCCAGGCATTAGCAGTATCACCTTCTAATGTTCAGGAGCAGGTTGAAGAGTCTATCGCTAGAAGAAACCTTCATAATTATCAACGCCAAAACTAG
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| Protein seq | MENAVVVQPWRSLFLHSIVSPVDGLCNAIISCILSSPCRIVRFHDIQMDHIHWKWWIVRARVIKKGHLQENYYGDLQIRLILIDELGTKMEAIVYRRQAEHFNQLLRCGSVYDFYNVGFDPTEMIVHLRFKIRSQFCMILNNATTTRTPHGPVHMLRCPWRFPEYDDIFLARHNSLVDVIGLVVHVGDIEFRSLYLRRTPTRIIALVNPRLQIIFVRVWDQQLTRNLTRWRSARTHFDCFVATLTRVDRRADELSTTYESDIIFNPDSASANEFNVLRQALAVSPSNVQEQVEESIARRNLHNYQRQN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g27840 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0012440 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0001910 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0017160 | SBH | 0.0 | 0.0 | 0.537176 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0275300 | SBH | 0.0154525 | 0.0226615 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0295100 | SBH | 0 | 0 | 0.0087925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016120 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G022880 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001230 | RBH | 0.0 | 0.0 | 0.843921 |
