Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_03G022880 | OGI:07010130 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr03:21577789-21578708 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGGCAATTGTTTACCGTCGTCAAGCTGAGCATTTCAACCAGCTTTTAAGATGTGGATCTGTTTATGATTTCTATAACGTCGGGTTTGATCCGACAGAAATGATCGTGCATCTAAGATTTAAGATAAGATCTCAGTTCTGCATGATTCTCAATAATGCAACAAACTACCCGCACGCCTCATGGTCCTGTCCACATGCTACGTTGTCCATGGCGTTTTCCAGAATATGATGATATTTTTTTGGCAAGGCACAATTCTTTAGTAGGTATATTGTTTGATTCGGTACTGACAAAAATACCAATCTTTGTTTAGTTGCTAGCAAATGAAAAACTAATGTGTCTATGGGTTGTGCAGATGTCATTGGATTAGTTGTGCATGTCGGGGACATTGAGTTCAGGAGTTTGTATTTGCGTCGGACGCCGACAAGGATAATCGCGCTGGTTAATCCTAGGTACGACATGCTCCATTTCTTTACATGTATTAATTAATTGAGATCACACAACACTCATGTTGCATATAATTTTTGTAAATCAGGTTGCAAATAATTTTCGTTCGTGTATGGGACCAACAACTTACCCGCAACTTGACTAGGTGGCGCTCAGCACGGACACATTTCGATTGTTTTGTGGCTACGCTGACGAGGGTGGACAGAAGAGCAGGTAAGGAAGCCCCCCTCTATTTCTCTAACATATTTGCCACCGTGATAAATCACATATTTTAAACTAACTGACATTTTCCTTTTGTAGATGAACTATCAACTACTTATGAATCTGACATAATTTTTAATCCTGATTCAGCATCAGCAAATGAATTCAATGTTTTGCGCCAGGCATTAGCAGTATCACCTTCTAATGTTCAGGAGCAGGTTGAAGAGTCTATCGCTAGAAGAAACCTTCATAATTATCAACGCCAAAACTAG
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| CDS seq | ATGGAGGCAATTGTTTACCGTCGTCAAGCTGAGCATTTCAACCAGCTTTTAAGATGTGGATCTGTTTATGATTTCTATAACGTCGGGTTTGATCCGACAGAAATGATCGTGCATCTAAGATTTAAGATAAGATCTCAGTTCTGCATGATTCTCAATAATGCAACAAACTACCCGCACGCCTCATGGTCCTATGTCATTGGATTAGTTGTGCATGTCGGGGACATTGAGTTCAGGAGTTTGTATTTGCGTCGGACGCCGACAAGGATAATCGCGCTGGTTAATCCTAGGTTGCAAATAATTTTCGTTCGTGTATGGGACCAACAACTTACCCGCAACTTGACTAGGTGGCGCTCAGCACGGACACATTTCGATTGTTTTGTGGCTACGCTGACGAGGGTGGACAGAAGAGCAGATGAACTATCAACTACTTATGAATCTGACATAATTTTTAATCCTGATTCAGCATCAGCAAATGAATTCAATGTTTTGCGCCAGGCATTAGCAGTATCACCTTCTAATGTTCAGGAGCAGGTTGAAGAGTCTATCGCTAGAAGAAACCTTCATAATTATCAACGCCAAAACTAG
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| Protein seq | MEAIVYRRQAEHFNQLLRCGSVYDFYNVGFDPTEMIVHLRFKIRSQFCMILNNATNYPHASWSYVIGLVVHVGDIEFRSLYLRRTPTRIIALVNPRLQIIFVRVWDQQLTRNLTRWRSARTHFDCFVATLTRVDRRADELSTTYESDIIFNPDSASANEFNVLRQALAVSPSNVQEQVEESIARRNLHNYQRQN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_03G022880 | OsN22_03G022880_01 | Chr03 | 21577789 | 21578708 | + | NAM | ||
| CDS seq | ATGGAGGCAATTGTTTACCGTCGTCAAGCTGAGCATTTCAACCAGCTTTTAAGATGTGGATCTGTTTATGATTTCTATAACGTCGGGTTTGATCCGACAGAAATGATCGTGCATCTAAGATTTAAGATAAGATCTCAGTTCTGCATGATTCTCAATAATGCAACAAACTACCCGCACGCCTCATGGTCCTATGTCATTGGATTAGTTGTGCATGTCGGGGACATTGAGTTCAGGAGTTTGTATTTGCGTCGGACGCCGACAAGGATAATCGCGCTGGTTAATCCTAGGTTGCAAATAATTTTCGTTCGTGTATGGGACCAACAACTTACCCGCAACTTGACTAGGTGGCGCTCAGCACGGACACATTTCGATTGTTTTGTGGCTACGCTGACGAGGGTGGACAGAAGAGCAGATGAACTATCAACTACTTATGAATCTGACATAATTTTTAATCCTGATTCAGCATCAGCAAATGAATTCAATGTTTTGCGCCAGGCATTAGCAGTATCACCTTCTAATGTTCAGGAGCAGGTTGAAGAGTCTATCGCTAGAAGAAACCTTCATAATTATCAACGCCAAAACTAG
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| Protein seq | MEAIVYRRQAEHFNQLLRCGSVYDFYNVGFDPTEMIVHLRFKIRSQFCMILNNATNYPHASWSYVIGLVVHVGDIEFRSLYLRRTPTRIIALVNPRLQIIFVRVWDQQLTRNLTRWRSARTHFDCFVATLTRVDRRADELSTTYESDIIFNPDSASANEFNVLRQALAVSPSNVQEQVEESIARRNLHNYQRQN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g27840 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0012440 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0009270 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0017160 | SBH | 0.0 | 0.0 | 0.537176 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0017070 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0012370 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0275300 | SBH | 0.0154525 | 0.0226615 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0012860 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0249400 | SBH | 0 | 0.0933875 | 0.023709 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0017250 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0016820 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0012320 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0012580 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0012390 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001220 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0022830 | RBH | 0.0 | 0.0 | 0.0 |
