Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_04G001210 | OGI:07010130 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr04:1578964-1586743 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGGTCGAATTGCTCACATACATTATTTAATACCTCAGATTTTCAATTGCATAATCCTCATATTTGCTTCCAATTTCCAATTTAAGATTGTTTGTTCTGCAATGGATAACAATGGTGGGAGTTCTGTGCCAACATCGTCAACAAGATCAGGTGACATTTTCATCCATCTAGCTAATGTTATATTTATCGCTCAATTGATATATTATTGCTTGCTAATATGAGGATCACTCCTCCCTCAGGTCCTTTTGCTGATATAACTAATGTAATTGATGCCAATTTGACGAACAACCATCCCGCTGCTAATAAAAATGGAACTAATGTGCCAAAAGATCGTGAGAATTGCCAGCACAACAACTTGGACTCTACAGGTTGGGCGTAGCACTATATTATATATTTTGTTTCTTTTTAAGGCTTTTGTATTAAGCACAGTTTTTTGTGTGCATGCACTCTTCAAGATGTTACAAAACTAAGTGCGACTGAACTAAAAAGGAAGCGTGCTAGGGAGTGGTATGCATCATTGACCAAAGAGCAAAAGGAAGATAGAAACAAGAAGGCACGAGATATCAGGAAGCGGACGAACTTTGAATCACAAGGTTTAAATCTCTATTGCAGCATATCTAAACTCTCTAAACAGAAAACTTTATTATTAAATTAATTGAACTTTCAGATGATGGGTCTCAAGCTGCGACATCAAAAAAAATTACTACTACGGCCTCATCTGTTTCAGGTTGAGTTGTCATATGGTCACTGCTAAAAATATGTTTGTAAATTTGTGCCAAAAACATTTTTTAATATGTTTGCATTTCAATAGCAACTCCGTTTGGTGATATTAAAATTGCAAGCACTGAAGATCAATCAGTAGGGGGCCGGTTGGATGTTAATGATGCAGGCACTGAAAATGTGGGTTCTATTGTAACGCCTGTGCGTCTACCATTTACTAACAGTTCTGATATGTCCTATAGTACACCCAGCGAGTATACCATGCCTCTCCAGGCAGAAGGTCCATTCAAATAACTCAAGTATAAAATGACAATTTATTATATTTATATATGCGTATGTGTGAACCTCAGATTTTTTGTGCAGATGCTCATGGAGATGTCACTAATCTCAGCGCGTCTGAACTAAAAAATAAGCGTTCTAGAGAGTGGTACGCATCATTGACCAAAGAGCAAAAGGAAGATAGAAACAGGAAGGCACGCGATGCCAGGAGGCGGAGGAAGGATGAATCTCAAGGTTTATATATAAATATACGCATATATATCTATATCCAAATTAAAGCTTTACGAATATCTTGGCTCATTATTATTATTTTATTAATTAAACTCTTTCAGGTAATGTGCCTAAAGCTACGACGTCAAAATTTTCTACTCCTACTCCTACGCTTGGAGATATTTCTATTGTCACCGCTGGAGATCCCGCAGGAAGGGAACAATGGGTTAGTAATGATGAATTATTGGACACCCCTACAACAAAGGGAACAGGTAATGTATATCCTTACGTGCACTTGCAATGAATGGTTTCACAATTGCAATTGTTTATAGTTCAATGTACTATGTTCAAACAGGAAGTGTATCTCAACAACCCACGATCACACCTAGACGTCTCCCATTTACAGTGATAAACAATATAGCATATTATGATCTTAATGAAGGATCCGAAGAACCTTTGAGCTACATAGTTCAAGGAGAGACACAGAACAATAATGAAACTGATTTTCTAGCTACGAATTCAGGTCAGGATACACAAAGTCGTAGAACATCATTAGAGAATTCACGAAATCCTGTATCCCGGAGCCTTTCACAAGACCAGTTGCAGTCACGTCGTGCTGGGGATAGGGCCAAGTATGCTGCTAAAACACCAGAACAGAAGCAAGTTATGCTAGAACGTCAGAGATCACGACGTCAGTCTATGACAGCGGAACAAAAACAAGAGATGAATGCACGCCTTAGGGTTGCAAGGCAAAATTTACCTGATGTGGACATTCATGAAATGAATGCCCGTCGTAGATCAAGACGGCAAAATGTCACTCCTGGAGAAAGGACTGCTCATCTCGCACGACGTAATGCACGCTACGCTGCTCGGCGTGACAAACCATGCGCTGAATCAATTGCGTTGGAGTGCCCTGAGGGTAGCAGCCCGTCGTTATTAAATCCAACGCCTTGCTTGGAAACAACCGATGATGTGCCAGCTACATCGAGCCGGCCAACTGAGCATGCTGCAGATCATCTTGCACGATCATGCACTTTTGATGATGGTATGATATATGTATGTTTTCATTCATACTCGCAATTTTGTACCCTTCCGCACACTAACTTTTCATTCCACTAAAGATGATATGGATTCCTTCATGGATGATGACACGGACGATGAATACTACATGTTTGCTGGGCTAGGTACCATCGTCCTCATACTTAAATCTCTCTTTCACTTGTATAGATTTTTGAAAACTAAACTCCTTTTCCGCTAAACAACCCTAGGCAATGATGACGATGACGAGATGGTACAATCTGATGACGACGACACGCAATCACCGACCTCTTCAGTTCCTGATCCGTTCGACTGTGTGTATAGCAACATTCCACAAAGCACAAATGTTCTGAAGGCTGAGCCTGACTGTAAACACTGTGGCGCCAAGAGGTTCCAGTACGAACCGCCAGGCTTCTGTTGTCGGGATGGAAAGATCAAGCTTGTAGAAAATGAAACACCCCCTGAACTGATGAGGCTCTGGACAAGCTCGGATCCAGACGCCAAGCATTTCCGGGATAACATTAGATATTTTAACGGCCACTTCTCATTCACTACCCTTGGTGTAAGCCTTGACAAGGCCTTTGCAAACATGAGCTCGGGCGTGTACACATTTCGGGCCCATGGTCAGATCTATCATAACATACATTCTTTTGGTCCTAGAGAGTCTGGTCCAGAGCATCTTGAGCTGTATTTTTATGATGACGATCCAACCTTGAGTCACAGGTTTCGTCGTTCTCCGAGCCTTGACCAGGATGTGATCAGGACTGTTTCAGACGTCCTTCGGAACAACCCGTACTCAGAGACATTTAGAAGTCTAGGGCAGGCTGATGACCTCGCGAACTACCGCGTGACACTAAATTTGGATCATAGGTTGGACCAAAGGCGTTACAATGTGCCGGTGACAACTGAGGTCGCCGCTGTCTGGGTTGAAGGAAACGAGAGAAGGAAATTTGAGCCTAGCGTGACAATATACGGTAACGACCGTACCCGTAAATGCATCCAGCCTTTCTACGGATGTTACGATCCACTCTCGTATCCTTTGTTCTTCCCTAGAGGAGAGAGTGGTTGGCATCAAGGTCTTCCAAAGGACAAAATAACCATGGAGGCTGCAAACGAGCGTCATGGCGATGATCCTGGTAAGTTTATCTTTGTACTATGTTACTAAGACAATTGATAATGCCCCATTACGTGACTACACTAACCCAAATGTTTCTCACGTGCAGATTGTAACAGCAGGATACGGGTCTCTGTAAGGGACTACTACTGCTACAAATTCCAGATGCGCCGTGGGATTTTCAATCCTATACTTCACGGCGGACGCCTATTCCAGCAGTTCGCTGTTGACATGTACATCAAGGTTGAGAGCTCCCGTCTGGACTATGTGAGGAACAACCAGAAGGAGATAAGGGCCGACCTGTATCAAGGTTTAATGGACAGCATCCAGGCTGGGGAGAGTCGAGCAAGCGCGGTCGGCAAACGGACTGTGTTGCCAGCGTCGTTCGTAGGTGGTGGCCGAAATATGAAGCGCCGATACATGGATGCCATGGCCTTAGTACAGAAGTATGGGAAGCCAGATGTATTCCTTACAATGACCAGCAACCCAAAGTGGGATGAGATTACTCGAGAGCTTGAGCCTGGCCAGACACCACAAGATCGTCCTGATCTTGTGGTCCGTGTCTTTCGAGCCAAGTTAGAGGACCTAAAGAAGCAGTTGTTTGAGAAACATATTCTTGGCAAGGTCATTGCACATGTTTATGTTGTTGAGTTCCAGAAGAGGGGTCTGCCGCATGCACACTTCTTGTTGATCATGAGTGGTAGATACAAGCTAACATCTGCGGACCAATATGACCGCATCGTCTCGGCTGAGCTTCCCGACAAGAAGAAGTATAGAGAGCTCTATGATATGGTTGTTAAGCATATGATGCATGGCCCTTGCGGTCCACTCAACGGTAAATGCCAATGCATGCGAGATGGAAAGTGTAGGAACAACTACCCACGACAGTTCAACCCTACAACCTCACAAGGCAAGGATTCATACCCGTTGTATAGGAGACGTAATGACGGTAAGAGTAGAGTGGTTAGAGGCCATCCTCTCGATAATAGGTGGGTTGTCCCGTACAATCCATATCTTCTACGGATGTACAACTGTCACATGAATGTCGAGGTCTGTTCGAGTATCAAGGCAGTGAAGTACCTATTTAAATACCTATACAAGGGACACGACAGGGCCTCGATATCAATAAACGAGGCAGATAGCAACGGCGAAATCGATGAGATTCAGCGCTACAGGGATGCGAGGTGGGTGACCCCTCCAGAAGCCTTGTGGCGTATATATGGGTTTGACATATGCCACATCTCGCCGTCTGTGAGGCAATTGCAACTGCATCTGCCAAACATGCACATGTTGGCTTTCGATGCAGACAAGGATCTTCGTGATGTTCTTGATAAGGAAGACGCAGGCAGGTCGATGCTTACAGCGTATTTCGAGGCTAACCGGCAGCATGTCTGGGCTCGAGATATCCTTTATAGGGATTTCCCAATGTGGTTTACTTGGCAGACAGCAGGTAAGTACTGGAAAAAAAGAGAGAGAGGTGTCCAGGTCGGGAGGATTGTGTGTGCCCACCCGGCAGAGGGGGAGCGTTACTATCTTCGGGTGCTGCTAAACCATGTGGCGGGCTCCACCTCATTCGAAGACCTACGCACTGTTGATGGCGTGGTCATGCCTTCGTTCCGTGCTGCAGCTGAAAGAAGGGGTCTTATAGAGGCAGACAACACCCTCGACGAGTGCCTTATGGAGGCCGCGGTCTTCCAGATGCCAGCGTCGCTACGCAGGTTATTCGCTACCATATTGGTGTATTGCGAACCTAGCGATGTCCGTGGTCTTTGGGACAAACATCTAGATGCCATGTCTGATGACTACAGGCGTAACAACACATGCCCTCATGTTGTCCAACAGATGGTGCTGATAGATATCCGAGGCATGCTACAATCAATGGGAAAGGAAATCACATCGTTTCCGCTCCCTGAAATTGATGAATCACATAATAGTACCAGAGGAGATCCCAGAGAGATTATTGAGGAGTCATCCATTGGTGTGGAGACGGACGATATGAACCTCTCAGACCAGCTGAATGATGAGCAAAGGTCCGCATTCAACAAAATCATGAATGCAGTTGGCAGTGCTCAGGGGGGTGTTTTCTTCGTAGATGGCCCAGGAGGCACGGGAAAGACTTTCCTGTATAGGGCGCTGCTAGCTACGGTTCGCGGCAAAGGAGATATAGCGGTGGCAACCGCGACGTCGGGTGTTGCAGCTTCTATAATGCCTGGAGGCCGGACCGCACATTCGCGGTTCAAGATCCCCCTCAACATTGACGAAGGGTCTTATTGCAGCTTCACCAAACAAAGTGGGACGGCGAAGCTTCTCCAGATGGCGTCACTTATAATATGGGATGAGGCCTCCATGACAAAGAGGCAGGCGGTTGAGGCCCTCGATATGAGCATGAGAGATATAATGGGTTGTCCGCGTTCTCCGTTTGGAGGGAAGACGATTGTGTTTGGAGGGGATTTCAGGCAGGTGCTCCCGGTCATCAGGAAGGGCACTAGGTCTCAGATAACAGATGCCACTCTACGCAGGTCCTATCTTTGGGATTGTATGGTTCAATTAAAGCTTGTTCGCAATATGAGGGCGCAGAGCGACACGTGGTTTGCGGACTACCTCCTTCGAGTTGGGAATGGAACCGAGGAGGTGAACAAGGAAGGACTCATAGGCCTTCCTTCGGATATTTGCGTGTCGTGCAAAGGGAATGAAACGGACCTCGAAAGGCTCATCGATACCGTGTTCCCCAACCTAAACGATAACCTGACGGACCCAAACTACATCACATGTAGGGCCATATTGTCCACTCGGAATGAGTTCGTCGATCGAATAAACATGAAGATGATTGAGCGGTTTAGAGGGGATGTGATGACATATCATAGTTTTGACCGAGCAGATGATGACCCTCATAACTATTACCCGCCGGAATTCTTGAACTCTCTAACTCCAAATGGCCTACCTCCGCATGTGCTTAAGCTGAAGATAAACTGCCCCATCATGCTTTTGAGGAACATTGACCCAGCCAACGGGCTTTGCAATGGGACAAGGCTGGTGGTTCGTCAGTTTGGAAAAAATGCTATTGACGCGGAGATTGTTGTAGGGCAGCATGTTGGAAAGAGAGTTTTCCTTCCTCGGATACCTCTATGTCCTTCTGATGATGAGATGTTCCCGTTTCGCTTCAAGAGGAAGCAATTTCCGGTTAGATTGAGCTTTGCATTGACCATCAATAAGGCACAGGGTCAAACCATTCCAAATGCAGGCATCTATTTACCAGAGCCTGTCTTCTCTCATGGTCAACTATACGTCGCGCTGTCTAGAGCAACCTCTAGAACAAACATAAAAATACTATCGATGCCGGTAGAAGACAAGAAACAAAATAAAAAGTCTAAGCGTACTGGCGTGAAGGACAATGAGAAGAAAGGAAAGGATTTGTCTAAACAGTCTGCAACATACACAAAAAATATTGTGTTTACAGAGGTCCTCACAGATTAGAAGAGGTATATTATGTGACTAATTAACCGTCCACAATATGTGATTCACTTGAATGCCATTGATTCCTAGCAGTATTTGTGCAACTGGCTACATCGAAAATTATATTTTGTAAGATGTTTACATCTGAAACCCCTGTACATAAAACTTGCTATTGGAATCACTGTTGCAAATATATTGTGTCACTAGCCCGATTAGGATAGGATAATTGCACAAATGTTTTATTTTTCCAAGTTATAACTGAAGTATATTAGGTTAATTTGAAACAACAGTGACTAAATGAGGTCCACATTTAATAATAGTGGATCATGCAATTTACCTGAAATTTATCTGAAGCATTCCATGGCTTGCTTAAATATGCTTGCTTAAATATGTATGTACTTTCTTACATAGCTGTACAGATGACGGATTGCATCTTTGGCAATGGGGTGCTGTGCCTGGATTAGCAGCAAAACATTATTATGCTCTTGATCTATTATTGTCAGGTTGACAAAGCAATATGGACTATAGACGCAGTGGAAGCATTGTAGGCGTGTGCAAGAAATGGTGAAGGGATGCATCTAGCACAAATTTCCTTCCTGATGAACATTCATTGTTAACAGTAGGTAATTGTATAAAATTAACTTACAATTCCATTTCAATCGCCATATAGGACTTCTTTGGAGAGGAGGAAGTTTACTATATTTGAACTAATTTTTGTAAAGTCTTATGTTCCAAACAAGCCCTGAAGCTAACAGATGGCAAGTATGTGATGTGAACTTTGTGCGGTGAAAGCAACCTGTAGCCTTTCATCTGCATATGTAGCTGTTGATTTTATAGATCGAACCCATTTATGCCTTTTGAATGCATGATCAATTTTTTGGTCAAATAAGGGCATCTATATAGTTAATGTGGACTGATGGCATATATTATATATTAATAATATTTTTTTGTCAGTGTTTCACTTGAC
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| CDS seq | ATGGATAACAATGGTGGGAGTTCTGTGCCAACATCGTCAACAAGATCAGGTCCTTTTGCTGATATAACTAATGTAATTGATGCCAATTTGACGAACAACCATCCCGCTGCTAATAAAAATGGAACTAATGTGCCAAAAGATCGTGAGAATTGCCAGCACAACAACTTGGACTCTACAGATGTTACAAAACTAAGTGCGACTGAACTAAAAAGGAAGCGTGCTAGGGAGTGGTATGCATCATTGACCAAAGAGCAAAAGGAAGATAGAAACAAGAAGGCACGAGATATCAGGAAGCGGACGAACTTTGAATCACAAGCAACTCCGTTTGGTGATATTAAAATTGCAAGCACTGAAGATCAATCAGTAGGGGGCCGGTTGGATGTTAATGATGCAGGCACTGAAAATGTGGGTTCTATTGTAACGCCTGTGCGTCTACCATTTACTAACAGTTCTGATATGTCCTATAGTACACCCAGCGAGTATACCATGCCTCTCCAGGCAGAAGATGCTCATGGAGATGTCACTAATCTCAGCGCGTCTGAACTAAAAAATAAGCGTTCTAGAGAGTGGTACGCATCATTGACCAAAGAGCAAAAGGAAGATAGAAACAGGAAGGCACGCGATGCCAGGAGGCGGAGGAAGGATGAATCTCAAGGTAATGTGCCTAAAGCTACGACGTCAAAATTTTCTACTCCTACTCCTACGCTTGGAGATATTTCTATTGTCACCGCTGGAGATCCCGCAGGAAGGGAACAATGGGTTAGTAATGATGAATTATTGGACACCCCTACAACAAAGGGAACAGGTTGA
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| Protein seq | MDNNGGSSVPTSSTRSGPFADITNVIDANLTNNHPAANKNGTNVPKDRENCQHNNLDSTDVTKLSATELKRKRAREWYASLTKEQKEDRNKKARDIRKRTNFESQATPFGDIKIASTEDQSVGGRLDVNDAGTENVGSIVTPVRLPFTNSSDMSYSTPSEYTMPLQAEDAHGDVTNLSASELKNKRSREWYASLTKEQKEDRNRKARDARRRRKDESQGNVPKATTSKFSTPTPTLGDISIVTAGDPAGREQWVSNDELLDTPTTKGTG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_04G001210 | OsN22_04G001210_01 | Chr04 | 1578964 | 1586743 | + | NAM | ||
| CDS seq | ATGGATAACAATGGTGGGAGTTCTGTGCCAACATCGTCAACAAGATCAGGTCCTTTTGCTGATATAACTAATGTAATTGATGCCAATTTGACGAACAACCATCCCGCTGCTAATAAAAATGGAACTAATGTGCCAAAAGATCGTGAGAATTGCCAGCACAACAACTTGGACTCTACAGATGTTACAAAACTAAGTGCGACTGAACTAAAAAGGAAGCGTGCTAGGGAGTGGTATGCATCATTGACCAAAGAGCAAAAGGAAGATAGAAACAAGAAGGCACGAGATATCAGGAAGCGGACGAACTTTGAATCACAAGCAACTCCGTTTGGTGATATTAAAATTGCAAGCACTGAAGATCAATCAGTAGGGGGCCGGTTGGATGTTAATGATGCAGGCACTGAAAATGTGGGTTCTATTGTAACGCCTGTGCGTCTACCATTTACTAACAGTTCTGATATGTCCTATAGTACACCCAGCGAGTATACCATGCCTCTCCAGGCAGAAGATGCTCATGGAGATGTCACTAATCTCAGCGCGTCTGAACTAAAAAATAAGCGTTCTAGAGAGTGGTACGCATCATTGACCAAAGAGCAAAAGGAAGATAGAAACAGGAAGGCACGCGATGCCAGGAGGCGGAGGAAGGATGAATCTCAAGGTAATGTGCCTAAAGCTACGACGTCAAAATTTTCTACTCCTACTCCTACGCTTGGAGATATTTCTATTGTCACCGCTGGAGATCCCGCAGGAAGGGAACAATGGGTTAGTAATGATGAATTATTGGACACCCCTACAACAAAGGGAACAGGTTGA
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| Protein seq | MDNNGGSSVPTSSTRSGPFADITNVIDANLTNNHPAANKNGTNVPKDRENCQHNNLDSTDVTKLSATELKRKRAREWYASLTKEQKEDRNKKARDIRKRTNFESQATPFGDIKIASTEDQSVGGRLDVNDAGTENVGSIVTPVRLPFTNSSDMSYSTPSEYTMPLQAEDAHGDVTNLSASELKNKRSREWYASLTKEQKEDRNRKARDARRRRKDESQGNVPKATTSKFSTPTPTLGDISIVTAGDPAGREQWVSNDELLDTPTTKGTG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0388500 | SBH | 1.655726 | 1.647140 | 1.361783 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0388500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0012450 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0012270 | SBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0038450 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016110 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G022870 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001220 | RBH | 0.0 | 0.0 | 0.0 |
