Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_02G011610 | OGI:02026600 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr02:9275351-9275916 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTGCATCCCCTGCTTCTACGGCCTTTCAAAGTCCTTTGAGGACAAGGCCTTTGGCACCTTGCCGATCACGATGTTGTTCAACAGGTCAATCAGGCGTTGCACCTCCTGTGTTTAACTATATAGTTGATGCAAGGAAAGGGAAGAAGAGTGCAAGCCAGATTGAGAATATCCACCAATTACGTCTGCTGTATGATAGATGCCTGCAGTGGCAGGTTGTAAATGCTCGTTCAGAAGATACACTAACCTTCCAAAAGAGTAGCATAGAGGTATGCTATATTGGTTTTGCTCCTGTCTGTTCTCTAATTGCTTTGCTCAAGTTTGTGCCTGATGAAGCCATTGTTTCTTAGTGGGTGCATTCTCTTTATTATTATTTTTTTTCATTGGGCAAGCAATGTTCAACTAATATAGTATCTCTCTCCTCCCATGTAAAACAGAGTATTGTTTACAGTGTGTGGAAAAGTATCGTGCAGCTGCGGGATTCTGTTACAGTAAGAAGAATTGATGTTCAAGTCCTGCAGCAAGAGCTCAAACTGTACTACATTTTAAAAGAGCAGGTACTTGGTTGA
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| CDS seq | ATGTTGTTCAACAGGAAAGGGAAGAAGAGTGCAAGCCAGATTGAGAATATCCACCAATTACGTCTGCTGTATGATAGATGCCTGCAGTGGCAGGTTGTAAATGCTCGTTCAGAAGATACACTAACCTTCCAAAAGAGTAGCATAGAGAGTATTGTTTACAGTGTGTGGAAAAGTATCGTGCAGCTGCGGGATTCTGTTACAGTAAGAAGAATTGATGTTCAAGTCCTGCAGCAAGAGCTCAAACTGTACTACATTTTAAAAGAGCAGGTACTTGGTTGA |
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| Protein seq | MLFNRKGKKSASQIENIHQLRLLYDRCLQWQVVNARSEDTLTFQKSSIESIVYSVWKSIVQLRDSVTVRRIDVQVLQQELKLYYILKEQVLG |
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| Function | Protein SNOWY COTYLEDON 3 [UniProtKB/Swiss-Prot:Q8GXD9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_02G011610 | OsN22_02G011610_01 | Chr02 | 9275351 | 9275916 | + | NAM | ||
| CDS seq | ATGTTGTTCAACAGGAAAGGGAAGAAGAGTGCAAGCCAGATTGAGAATATCCACCAATTACGTCTGCTGTATGATAGATGCCTGCAGTGGCAGGTTGTAAATGCTCGTTCAGAAGATACACTAACCTTCCAAAAGAGTAGCATAGAGAGTATTGTTTACAGTGTGTGGAAAAGTATCGTGCAGCTGCGGGATTCTGTTACAGTAAGAAGAATTGATGTTCAAGTCCTGCAGCAAGAGCTCAAACTGTACTACATTTTAAAAGAGCAGGTACTTGGTTGA
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| Protein seq | MLFNRKGKKSASQIENIHQLRLLYDRCLQWQVVNARSEDTLTFQKSSIESIVYSVWKSIVQLRDSVTVRRIDVQVLQQELKLYYILKEQVLG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g34320 | SBH | 0.0 | 0.0 | 0.329643 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0036780 | SBH | 0.210744 | 14.002657 | 11.776797 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0036890 | SBH | 0.145116 | 1.942661 | 4.641905 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0017440 | SBH | 0.0 | 0.000000 | 3.037264 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0036350 | SBH | 0.093321 | 0.311224 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0036540 | SBH | 0.685702 | 20.816042 | 23.438122 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0149700 | RBH | 0.00341 | 0.0234315 | 0.0116095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0036320 | SBH | 0.099591 | 0.620185 | 2.358719 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0158500 | RBH | 0.204809 | 0.039704 | 1.234667 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0036570 | SBH | 0.072293 | 0.251863 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0036400 | SBH | 0.177059 | 9.703235 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0036630 | SBH | 3.115376 | 20.654758 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0036600 | SBH | 0.054862 | 1.171751 | 1.701612 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0036220 | SBH | 0.027789 | 8.033658 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G017330 | SBH | 0.0 | 0.0 | 2.318150 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0036610 | SBH | 0.799062 | 13.957110 | 12.686360 |
