Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_02G006150 | OGI:02013830 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr02:4228674-4230261 | ||||||||
| Gene Symbol | MSL10, OsMSL10, MSL10, - | ||||||||||
| DNA seq | CTAAACCAGGTTGTTATCCCTGCTCCATTTGCTGAAGTAGTTGAACCTAAGCTCATGGTTTGGTAGTCCAACGAAGAACTCCCTTTGGTAGGGATTCTCAAACATCTTGGACATTGCAAAAATATTCTCAGTGGTTTGCTCAATTCCACACTCGAAGGCCATCTTCATACAATTTCTCACTGAAGCAGCCTGCTTCTCAATAGTACGCTTCCTCAATTCCTGGCTGTTGATTTGCATGGCCTCCTTGAATGACATGGATATGTCCTTCACATACTTAACCATGGGGCTTTTGCTTTTCTTCACTGGAGTGCTACATGTGCTGGTAGTGCTGTCGAGGGACCTCTTGCTCTTCTGGCTACTTGTACTCTGAGGAGTTTGTAGGAACTCCTCTGTTTCTTCTGCCCACTCATCTTCAGCCCCTTCTTGTGCCTCACCGAAATCATCACTGGCAGCAAAAGCAGTGCTACCATCGACAGTACTGCCACTGAACATCTCCTCAAGCTGATCCAAGTTTGCTGGAAGTCCTTTAAGCACCTTCTTCAGGTAAGGTTTGCCCTGCAAGAATAATCCAAACATAAGAACACTAAACGCAGACAGATAATAACCCAAAAAAACATGATCAGCAATAAAAAAAATGGTAGAAAAGTACCTCTATGTGACTACTCCAGAAATCAGAATCAACATCGACTGTTCCATCAGGTTTTCTTCCTAAGCCCGTGTGCGTTTGCAAGTAACGCCAGAAGGAGTACGTGCTCTTGAGAATCCCAATTTGATTCTTTAGCTGCAGACGACTGTGCATCAAACCAGTTTTGGCATGGTAGCCCTCGGCTATAGCATTATAGCCATCAGAATTCATTTGGCTACCATTGTAGTGGCCTGCTCTTACTTGCTCTATGCACAATGCTAACAAAATACTATTATTCCTATCAGTCCAGTTAGCTCGGTCAGCAGTGCTCACCGGAGGGCCGCCGAAGCTGCCTAATTCCTCCACCTCATCGTCCCATGCACCTTCTTCGTCAAGGTCGACGTAATCGCCGATGGGTGCTTCCTGGGTGCCGACACTCCTCGGCGCACGCCAACCGCGGCCCCCACGTCCGCGGTCGCGGCCACGGTTGGTTGCCATGGCGCGCTGCCGACGGCGACCCGTTGCCCCTGATGAGGAGCTGCCTCGCCCAGGGCCGCCGCCGCCGATGCCCGACGACGACCCACCATTTCCACCGTGTCCAGCACGGCCACCTACCGCGCCGAAGTTGAGCTGGCGGGCACGCGGTGCAGCACGAGATGGCCCGGCGCCCCCTCGACCAGCCCTCACTCCCAGAGAGCGTGGTGCACGGATGGGAGGGAGACCGGAGCCTCAGCCGCGGCCAGCTCCTTCCTCGCCGCCACCCTGGAGGAAGGCACCGTACTCGTGGAGGTGAGGGAACTCCTGGCCCGACGCCGCCTGGGTGTTGAGGTCCAGCGTGTCCACGCCGGCGCGGGGAACGGATCCGTGGGAAGGGCCGGACGCCGACGGCTGCGACAACCAAATGTTGCCGGCGGCGGACGAAATGGGATCTTGGGAGAAGAAATCGAAGCCGTTGGGGTCCAT
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| CDS seq | ATGGACCCCAACGGCTTCGATTTCTTCTCCCAAGATCCCATTTCGTCCGCCGCCGGCAACATTTGGTTGTCGCAGCCGTCGGCGTCCGGCCCTTCCCACGGATCCGTTCCCCGCGCCGGCGTGGACACGCTGGACCTCAACACCCAGGCGGCGTCGGGCCAGGAGTTCCCTCACCTCCACGAGTACGGGTGGCGGCGAGGAAGGAGCTGGCCGCGGCTGAGGCTCCGGTCTCCCTCCCATCCGTGCACCACGCTCTCTGGGAGTGAGGGCTGGTCGAGGGGGCGCCGGGCCATCTCGTGCTGCACCGCGTGCCCGCCAGCTCAACTTCGGCGCGGTGGCCGTGCTGGACACGGTGGAAATGGTGGGTCGTCGTCGGGCATCGGCGGCGGCGGCCCTGGGCGAGGCAGCTCCTCATCAGGGGCAACGGGTCGCCGTCGGCAGCGCGCCATGGCAACCAACCGTGGCCGCGACCGCGGACGTGGGGGCCGCGGTTGGCGTGCGCCGAGGAGTGTCGGCACCCAGGAAGCACCCATCGGCGATTACGTCGACCTTGACGAAGAAGGTGCATGGGACGATGAGGTGGAGGAATTAGGCAGCTTCGGCGGCCCTCCGGTGAGCACTGCTGACCGAGCTAACTGGACTGATAGGAATAATAGTATTTTGTTAGCATTGTGCATAGAGCAAGTAAGAGCAGGCCACTACAATGGTAGCCAAATGAATTCTGATGGCTATAATGCTATAGCCGAGGGCTACCATGCCAAAACTGGTTTGATGCACAGTCGTCTGCAGCTAAAGAATCAAATTGGGATTCTCAAGAGCACGTACTCCTTCTGGCGTTACTTGCAAACGCACACGGGCTTAGGAAGAAAACCTGATGGAACAGTCGATGTTGATTCTGATTTCTGGAGTAGTCACATAGAGGGCAAACCTTACCTGAAGAAGAAAAGCAAAAGCCCCATGGTTAAGTATGTGAAGGACATATCCATGTCATTCAAGGAGGCCATGCAAATCAACAGCCAGGAATTGAGGAAGCGTACTATTGAGAAGCAGGCTGCTTCAGTGAGAAATTGTATGAAGATGGCCTTCGAGTGTGGAATTGAGCAAACCACTGAGAATATTTTTGCAATGTCCAAGATGTTTGAGAATCCCTACCAAAGGGAGTTCTTCGTTGGACTACCAAACCATGAGCTTAGGTTCAACTACTTCAGCAAATGGAGCAGGGATAACAACCTGGTTTAG
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| Protein seq | MDPNGFDFFSQDPISSAAGNIWLSQPSASGPSHGSVPRAGVDTLDLNTQAASGQEFPHLHEYGWRRGRSWPRLRLRSPSHPCTTLSGSEGWSRGRRAISCCTACPPAQLRRGGRAGHGGNGGSSSGIGGGGPGRGSSSSGATGRRRQRAMATNRGRDRGRGGRGWRAPRSVGTQEAPIGDYVDLDEEGAWDDEVEELGSFGGPPVSTADRANWTDRNNSILLALCIEQVRAGHYNGSQMNSDGYNAIAEGYHAKTGLMHSRLQLKNQIGILKSTYSFWRYLQTHTGLGRKPDGTVDVDSDFWSSHIEGKPYLKKKSKSPMVKYVKDISMSFKEAMQINSQELRKRTIEKQAASVRNCMKMAFECGIEQTTENIFAMSKMFENPYQREFFVGLPNHELRFNYFSKWSRDNNLV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_02G006150 | OsN22_02G006150_01 | Chr02 | 4228674 | 4230261 | - | NAM | ||
| CDS seq | ATGGACCCCAACGGCTTCGATTTCTTCTCCCAAGATCCCATTTCGTCCGCCGCCGGCAACATTTGGTTGTCGCAGCCGTCGGCGTCCGGCCCTTCCCACGGATCCGTTCCCCGCGCCGGCGTGGACACGCTGGACCTCAACACCCAGGCGGCGTCGGGCCAGGAGTTCCCTCACCTCCACGAGTACGGGTGGCGGCGAGGAAGGAGCTGGCCGCGGCTGAGGCTCCGGTCTCCCTCCCATCCGTGCACCACGCTCTCTGGGAGTGAGGGCTGGTCGAGGGGGCGCCGGGCCATCTCGTGCTGCACCGCGTGCCCGCCAGCTCAACTTCGGCGCGGTGGCCGTGCTGGACACGGTGGAAATGGTGGGTCGTCGTCGGGCATCGGCGGCGGCGGCCCTGGGCGAGGCAGCTCCTCATCAGGGGCAACGGGTCGCCGTCGGCAGCGCGCCATGGCAACCAACCGTGGCCGCGACCGCGGACGTGGGGGCCGCGGTTGGCGTGCGCCGAGGAGTGTCGGCACCCAGGAAGCACCCATCGGCGATTACGTCGACCTTGACGAAGAAGGTGCATGGGACGATGAGGTGGAGGAATTAGGCAGCTTCGGCGGCCCTCCGGTGAGCACTGCTGACCGAGCTAACTGGACTGATAGGAATAATAGTATTTTGTTAGCATTGTGCATAGAGCAAGTAAGAGCAGGCCACTACAATGGTAGCCAAATGAATTCTGATGGCTATAATGCTATAGCCGAGGGCTACCATGCCAAAACTGGTTTGATGCACAGTCGTCTGCAGCTAAAGAATCAAATTGGGATTCTCAAGAGCACGTACTCCTTCTGGCGTTACTTGCAAACGCACACGGGCTTAGGAAGAAAACCTGATGGAACAGTCGATGTTGATTCTGATTTCTGGAGTAGTCACATAGAGGGCAAACCTTACCTGAAGAAGAAAAGCAAAAGCCCCATGGTTAAGTATGTGAAGGACATATCCATGTCATTCAAGGAGGCCATGCAAATCAACAGCCAGGAATTGAGGAAGCGTACTATTGAGAAGCAGGCTGCTTCAGTGAGAAATTGTATGAAGATGGCCTTCGAGTGTGGAATTGAGCAAACCACTGAGAATATTTTTGCAATGTCCAAGATGTTTGAGAATCCCTACCAAAGGGAGTTCTTCGTTGGACTACCAAACCATGAGCTTAGGTTCAACTACTTCAGCAAATGGAGCAGGGATAACAACCTGGTTTAG
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| Protein seq | MDPNGFDFFSQDPISSAAGNIWLSQPSASGPSHGSVPRAGVDTLDLNTQAASGQEFPHLHEYGWRRGRSWPRLRLRSPSHPCTTLSGSEGWSRGRRAISCCTACPPAQLRRGGRAGHGGNGGSSSGIGGGGPGRGSSSSGATGRRRQRAMATNRGRDRGRGGRGWRAPRSVGTQEAPIGDYVDLDEEGAWDDEVEELGSFGGPPVSTADRANWTDRNNSILLALCIEQVRAGHYNGSQMNSDGYNAIAEGYHAKTGLMHSRLQLKNQIGILKSTYSFWRYLQTHTGLGRKPDGTVDVDSDFWSSHIEGKPYLKKKSKSPMVKYVKDISMSFKEAMQINSQELRKRTIEKQAASVRNCMKMAFECGIEQTTENIFAMSKMFENPYQREFFVGLPNHELRFNYFSKWSRDNNLV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0181400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g08450 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0181400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0020100 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0094800 | RBH | 0.03861 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0019990 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0098400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0020220 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0020460 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0020400 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0020450 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0020650 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G020140 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020840 | SBH | 0.0 | 5.863395 | 4.340547 |
