Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsN22_01G044100 OGI:01118120 | 16/16 N22 | OsN22RS2 | Gramene(+IsoSeq) Chr01:39619868-39622989
Gene Symbol OsbHLH090
DNA seq

CAGAGGGGAAAAAAAGGGGATAATTTCAGCTTAAGGAGATCGATCCATGGACAGGAAGAAGGATCTTAAAGATATATATCAGCTACAAATATAATGAGAATACAAATAATGATATTACACGTCGTCCCTCTCTGCTTGAGAGGGTAAAAGGGTCTGAATGAAGCATCATATACTGCACCCGACTTATGTACGATCTTGTAGCATACATATATATACTACACCCGACTACCGTACATGGTGCGTTTCATTTTTGTTCAAAGAATCATTACACCAAGATGGGAAATTAGAAGCTAAAACACTGCTAGGGCCCAACATTGTTAGGGTTGAATCTCAGAGTGCTGCCGCGGCAAGCTGACTTCTCTGTATGTACAATGGGCGTCAGAGCTTTGGATCGAACCTTTATTTGGTCATGTCAAAGCTCCATTTTCATGTGGACTGTTTGCAACGATCCTGATCCATAGCAGTTTACACATTAGAATTCAGTTAAGGTGACGTTAACTATGGCATCAGGTAATAGGATGAGGAAACTTGCCTACCATTGTAGCTATTGGAAGAGGTGGCGATCTCCTGACTTTGCCCCATATCCATCTGAACAACACTTTGGAGATCATCTTGCCAGAAAGCACCAACCTGTAAAGCATTCATTCCTCATATTCAGCATCGATTCATTCGAACATTTTGTGAGATCGAGACATTGGTGTGCATTTTTACCTGAGAAGCCGCATCGCTAACCCCATTGAGGAAAGGATGGTGCGAGCCCATTGGCCGGCAAAATGCCGGGTCCAATGGGTGCATAGAACCCTGGTTGTCCATGCCGTTCGTCAGGCCACAACCGAGAGGGTTCCCTTGCTGAGGCTGGTTAATGTAGGGCAGCGGCGCACCTGAGGTCTCTAGTGGAAAATGTGAGCTCTGTAACGGGCTGCATGACTGGTGCATCTGATCAGGGAGAAAATCGGAAACACGAGGTAAGCTGGGAACTGTATGATTGCCACAATAAGAGAGGAAACAAATGTAGTAATGAGATCACATAAGCTTGCCCTCACATCTTTAGCAAGGAGGTTAGGCAAATTGTTGAAGTCCAGCTGGGGATTCACAGTGGCCAACTTCATGGACAAAAACTGCAAAATGGATGTGAAAGGCAAAGGTTCAGATGGCGCACGCCCGCGCTTGCTGCGCTCTAAATCGGCAAAAGCTACAGTTTCACAATCATTCTGCATCTGTGAATTTGACACTGGACAAATACCTCGACTTGCCGTTGCAACGACTGCACATAGTTTATGATTTCATCGAGCATGACAGCCTTTCCAACCACCTGAAACAAGTAAGCATTTCCCAGTTTCCAATCTGAGCACACCGAGCAACTCAAGTAACAAACAGGTGGGCGATGATGCAAATGATGAGTGCTTTTCTTCAGTTACCTTGTTACAACCCGGCACGAGATCCTGCAGCAGCTTCATCCTCTGGCTTATCTTCTCTCTTCTCACCTGAATTGATCGAACAAGAGGAGATACACACAGCATGTTAATGCACAGGGAAGATGATGATCAGAAGAGCAATGGAAGCTAGAGCTGCAAGAATTTTGTGTGTGTACCCTCTCGGCGAGGCTGTGGCTGTCCGTCGCCTCGCCGCGCCGGGCGCGGACATGGATGTAGTCCTTGGGCGGCTCGGGGGGCTTCGACGAGCTGTCCTTCCCTTGCTTCTTGCCGCCGCCATTCTCGCTGTTGCTCTGCGCGGCCTTCCCCTTGCCGGAATTCTCCTCGGCGGCCGCATTGCTCTCCTCCGTCGATTTGCAACGCTTGCCGCTGGAATCCTCCTGCAGAACGCTCGAGAGATGAAATCTTTCGGTCCAAGAATGGTGCGGCGCGGCCATGGCGAGCGGAATTCGGCGCGTACCTTGGCGGCGGAGGTGGACATGGGGCTGTCCTTGCCTTTGCCCTTCCCGGAGGCCTTCCGCTTCCGTGCATTGCCGTCGGAAGCCCCCTTGGGCGGAATCTCGGCGCCGCCGGGCGCCGGATCAGACACCGACGACTCGTCCCGGGTGTTCCCGAGCTCCATCTCCTTCGATGCGCCGGCCGCGCCGGCGTCAGGGAGGCCGAATTGCGCCGGGCCGGCGCCGCCGTAGCCTCCTCCGCCGCCGCCGCCGCGGGCGTCGAAGCCGGAGAGCCTCGCGGCGCGCTCGGCGAAGCCAGGGTCGGCGAGGAACTGGTCGAGGTGGCCCATGGGCATCAGGTTCTCGAGGATTGGCAGGCCCCCGCCTCCGCCTCCGCCGCCGCCCACCTGCGGCGGCGCGGCGTAGTGGTGGAACTGCCCCATCATGGACAGGTTGAGCTTGGGGGGCGAGCTGAGCGGCGTCCCGCCACCGTAGTGCGGCTGCGGCGAGATCCCGTGGAGAGCGCCCGTCGAGTTGGACGCCGGCGAGGACACCATGGAGCTGAGCGCCGGGTCGAGGTGCCCTCCCGCCGCCGCGTCCATGGACTGGTCCCAGTTGAGGTTGAGGAAGCACGACGGCGCCGTCGCCGGCGGCAACTGGTCGGGCGGCCCGCAGTTCATCTCAAAGATCTGCCGCAATTCTCCACGAAACCCAACCAAACCACCCGAATTCCCGAGCTCCCAAGAACGCCCCAATCCAGCAAAAGAAACGCGAGAGGCGAGCAGCCACCAAATCCCACTACGACGGGGGTGAGGGAAGGCGAGCGGAGATAAGGTAAAGGCAGGAGCTTTTCGTGTGCGTGACAAAGCAAGGAAAAGTGGGGGAACAGTAAAGGAGTGGAAAAGAAGCACCTAAAACAAAGCAAAAGCTTTGCAAGCCAAAAAAAAAAAAAAACAGAGAGAGAGAGAGGAGAGAGCTCGCAATCGCAAGCAGAAGCAGCAGCAAGTATAGATTGGGAGTGTGAGCCTACGGGGAGTATGTATATAGGACCAGGATGGCATGGGTCAAAATGGATGGGCTCATGGGCATCATCACCCCAGCCTTTCCTGCCATGAAAGAAGGAAGAAGCTAGAGAGAGAGGCACTGGAGATGGTAGATGGAGTAGTGGTGGTGGTGATGGTAGGGGTAGTGGTGCTGAGTTTACTTGCACAGGCAAGAGGTGAGTGAAGAGAGGAAGAGGGGAAAGGGGAAT

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CDS seq

ATGAACTGCGGGCCGCCCGACCAGTTGCCGCCGGCGACGGCGCCGTCGTGCTTCCTCAACCTCAACTGGGACCAGTCCATGGACGCGGCGGCGGGAGGGCACCTCGACCCGGCGCTCAGCTCCATGGTGTCCTCGCCGGCGTCCAACTCGACGGGCGCTCTCCACGGGATCTCGCCGCAGCCGCACTACGGTGGCGGGACGCCGCTCAGCTCGCCCCCCAAGCTCAACCTGTCCATGATGGGGCAGTTCCACCACTACGCCGCGCCGCCGCAGGTGGGCGGCGGCGGAGGCGGAGGCGGGGGCCTGCCAATCCTCGAGAACCTGATGCCCATGGGCCACCTCGACCAGTTCCTCGCCGACCCTGGCTTCGCCGAGCGCGCCGCGAGGCTCTCCGGCTTCGACGCCCGCGGCGGCGGCGGCGGAGGAGGCTACGGCGGCGCCGGCCCGGCGCAATTCGGCCTCCCTGACGCCGGCGCGGCCGGCGCATCGAAGGAGATGGAGCTCGGGAACACCCGGGACGAGTCGTCGGTGTCTGATCCGGCGCCCGGCGGCGCCGAGATTCCGCCCAAGGGGGCTTCCGACGGCAATGCACGGAAGCGGAAGGCCTCCGGGAAGGGCAAAGGCAAGGACAGCCCCATGTCCACCTCCGCCGCCAAGGAGGATTCCAGCGGCAAGCGTTGCAAATCGACGGAGGAGAGCAATGCGGCCGCCGAGGAGAATTCCGGCAAGGGGAAGGCCGCGCAGAGCAACAGCGAGAATGGCGGCGGCAAGAAGCAAGGGAAGGACAGCTCGTCGAAGCCCCCCGAGCCGCCCAAGGACTACATCCATGTCCGCGCCCGGCGCGGCGAGGCGACGGACAGCCACAGCCTCGCCGAGAGGGTGAGAAGAGAGAAGATAAGCCAGAGGATGAAGCTGCTGCAGGATCTCGTGCCGGGTTGTAACAAGGTGGTTGGAAAGGCTGTCATGCTCGATGAAATCATAAACTATGTGCAGTCGTTGCAACGGCAAGTCGAGTTTTTGTCCATGAAGTTGGCCACTGTGAATCCCCAGCTGGACTTCAACAATTTGCCTAACCTCCTTGCTAAAGATATGCACCAGTCATGCAGCCCGTTACAGAGCTCACATTTTCCACTAGAGACCTCAGGTGCGCCGCTGCCCTACATTAACCAGCCTCAGCAAGGGAACCCTCTCGGTTGTGGCCTGACGAACGGCATGGACAACCAGGGTTCTATGCACCCATTGGACCCGGCATTTTGCCGGCCAATGGGCTCGCACCATCCTTTCCTCAATGGGGTTAGCGATGCGGCTTCTCAGGTTGGTGCTTTCTGGCAAGATGATCTCCAAAGTGTTGTTCAGATGGATATGGGGCAAAGTCAGGAGATCGCCACCTCTTCCAATAGCTACAATGGTAGGATCGTTGCAAACAGTCCACATGAAAATGGAGCTTTGACATGA

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Protein seq

MNCGPPDQLPPATAPSCFLNLNWDQSMDAAAGGHLDPALSSMVSSPASNSTGALHGISPQPHYGGGTPLSSPPKLNLSMMGQFHHYAAPPQVGGGGGGGGGLPILENLMPMGHLDQFLADPGFAERAARLSGFDARGGGGGGGYGGAGPAQFGLPDAGAAGASKEMELGNTRDESSVSDPAPGGAEIPPKGASDGNARKRKASGKGKGKDSPMSTSAAKEDSSGKRCKSTEESNAAAEENSGKGKAAQSNSENGGGKKQGKDSSSKPPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQLDFNNLPNLLAKDMHQSCSPLQSSHFPLETSGAPLPYINQPQQGNPLGCGLTNGMDNQGSMHPLDPAFCRPMGSHHPFLNGVSDAASQVGAFWQDDLQSVVQMDMGQSQEIATSSNSYNGRIVANSPHENGALT

Function Transcription factor bHLH62 [UniProtKB/Swiss-Prot:Q9SRT2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsN22_01G044100 OsN22_01G044100_01 Chr01 39619868 39622989 - NAM
CDS seq

ATGAACTGCGGGCCGCCCGACCAGTTGCCGCCGGCGACGGCGCCGTCGTGCTTCCTCAACCTCAACTGGGACCAGTCCATGGACGCGGCGGCGGGAGGGCACCTCGACCCGGCGCTCAGCTCCATGGTGTCCTCGCCGGCGTCCAACTCGACGGGCGCTCTCCACGGGATCTCGCCGCAGCCGCACTACGGTGGCGGGACGCCGCTCAGCTCGCCCCCCAAGCTCAACCTGTCCATGATGGGGCAGTTCCACCACTACGCCGCGCCGCCGCAGGTGGGCGGCGGCGGAGGCGGAGGCGGGGGCCTGCCAATCCTCGAGAACCTGATGCCCATGGGCCACCTCGACCAGTTCCTCGCCGACCCTGGCTTCGCCGAGCGCGCCGCGAGGCTCTCCGGCTTCGACGCCCGCGGCGGCGGCGGCGGAGGAGGCTACGGCGGCGCCGGCCCGGCGCAATTCGGCCTCCCTGACGCCGGCGCGGCCGGCGCATCGAAGGAGATGGAGCTCGGGAACACCCGGGACGAGTCGTCGGTGTCTGATCCGGCGCCCGGCGGCGCCGAGATTCCGCCCAAGGGGGCTTCCGACGGCAATGCACGGAAGCGGAAGGCCTCCGGGAAGGGCAAAGGCAAGGACAGCCCCATGTCCACCTCCGCCGCCAAGGAGGATTCCAGCGGCAAGCGTTGCAAATCGACGGAGGAGAGCAATGCGGCCGCCGAGGAGAATTCCGGCAAGGGGAAGGCCGCGCAGAGCAACAGCGAGAATGGCGGCGGCAAGAAGCAAGGGAAGGACAGCTCGTCGAAGCCCCCCGAGCCGCCCAAGGACTACATCCATGTCCGCGCCCGGCGCGGCGAGGCGACGGACAGCCACAGCCTCGCCGAGAGGGTGAGAAGAGAGAAGATAAGCCAGAGGATGAAGCTGCTGCAGGATCTCGTGCCGGGTTGTAACAAGGTGGTTGGAAAGGCTGTCATGCTCGATGAAATCATAAACTATGTGCAGTCGTTGCAACGGCAAGTCGAGTTTTTGTCCATGAAGTTGGCCACTGTGAATCCCCAGCTGGACTTCAACAATTTGCCTAACCTCCTTGCTAAAGATATGCACCAGTCATGCAGCCCGTTACAGAGCTCACATTTTCCACTAGAGACCTCAGGTGCGCCGCTGCCCTACATTAACCAGCCTCAGCAAGGGAACCCTCTCGGTTGTGGCCTGACGAACGGCATGGACAACCAGGGTTCTATGCACCCATTGGACCCGGCATTTTGCCGGCCAATGGGCTCGCACCATCCTTTCCTCAATGGGGTTAGCGATGCGGCTTCTCAGGTTGGTGCTTTCTGGCAAGATGATCTCCAAAGTGTTGTTCAGATGGATATGGGGCAAAGTCAGGAGATCGCCACCTCTTCCAATAGCTACAATGGATCGTTGCAAACAGTCCACATGAAAATGGAGCTTTGA

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Protein seq

MNCGPPDQLPPATAPSCFLNLNWDQSMDAAAGGHLDPALSSMVSSPASNSTGALHGISPQPHYGGGTPLSSPPKLNLSMMGQFHHYAAPPQVGGGGGGGGGLPILENLMPMGHLDQFLADPGFAERAARLSGFDARGGGGGGGYGGAGPAQFGLPDAGAAGASKEMELGNTRDESSVSDPAPGGAEIPPKGASDGNARKRKASGKGKGKDSPMSTSAAKEDSSGKRCKSTEESNAAAEENSGKGKAAQSNSENGGGKKQGKDSSSKPPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQLDFNNLPNLLAKDMHQSCSPLQSSHFPLETSGAPLPYINQPQQGNPLGCGLTNGMDNQGSMHPLDPAFCRPMGSHHPFLNGVSDAASQVGAFWQDDLQSVVQMDMGQSQEIATSSNSYNGSLQTVHMKMEL

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Gene Transcript Chromosome Start End Strand Source
OsN22_01G044100 OsN22_01G044100_02 Chr01 39619872 39622989 - NAM
CDS seq

ATGAACTGCGGGCCGCCCGACCAGTTGCCGCCGGCGACGGCGCCGTCGTGCTTCCTCAACCTCAACTGGGACCAGTCCATGGACGCGGCGGCGGGAGGGCACCTCGACCCGGCGCTCAGCTCCATGGTGTCCTCGCCGGCGTCCAACTCGACGGGCGCTCTCCACGGGATCTCGCCGCAGCCGCACTACGGTGGCGGGACGCCGCTCAGCTCGCCCCCCAAGCTCAACCTGTCCATGATGGGGCAGTTCCACCACTACGCCGCGCCGCCGCAGGTGGGCGGCGGCGGAGGCGGAGGCGGGGGCCTGCCAATCCTCGAGAACCTGATGCCCATGGGCCACCTCGACCAGTTCCTCGCCGACCCTGGCTTCGCCGAGCGCGCCGCGAGGCTCTCCGGCTTCGACGCCCGCGGCGGCGGCGGCGGAGGAGGCTACGGCGGCGCCGGCCCGGCGCAATTCGGCCTCCCTGACGCCGGCGCGGCCGGCGCATCGAAGGAGATGGAGCTCGGGAACACCCGGGACGAGTCGTCGGTGTCTGATCCGGCGCCCGGCGGCGCCGAGATTCCGCCCAAGGGGGCTTCCGACGGCAATGCACGGAAGCGGAAGGCCTCCGGGAAGGGCAAAGGCAAGGACAGCCCCATGTCCACCTCCGCCGCCAAGGAGGATTCCAGCGGCAAGCGTTGCAAATCGACGGAGGAGAGCAATGCGGCCGCCGAGGAGAATTCCGGCAAGGGGAAGGCCGCGCAGAGCAACAGCGAGAATGGCGGCGGCAAGAAGCAAGGGAAGGACAGCTCGTCGAAGCCCCCCGAGCCGCCCAAGGACTACATCCATGTCCGCGCCCGGCGCGGCGAGGCGACGGACAGCCACAGCCTCGCCGAGAGGGTGAGAAGAGAGAAGATAAGCCAGAGGATGAAGCTGCTGCAGGATCTCGTGCCGGGTTGTAACAAGGTGGTTGGAAAGGCTGTCATGCTCGATGAAATCATAAACTATGTGCAGTCGTTGCAACGGCAAGTCGAGTTTTTGTCCATGAAGTTGGCCACTGTGAATCCCCAGCTGGACTTCAACAATTTGCCTAACCTCCTTGCTAAAGATATGCACCAGTCATGCAGCCCGTTACAGAGCTCACATTTTCCACTAGAGACCTCAGGTGCGCCGCTGCCCTACATTAACCAGCCTCAGCAAGGGAACCCTCTCGGTTGTGGCCTGACGAACGGCATGGACAACCAGGGTTCTATGCACCCATTGGACCCGGCATTTTGCCGGCCAATGGGCTCGCACCATCCTTTCCTCAATGGGGTTAGCGATGCGGCTTCTCAGGTTGGTGCTTTCTGGCAAGATGATCTCCAAAGTGTTGTTCAGATGGATATGGGGCAAAGTCAGGAGATCGCCACCTCTTCCAATAGCTACAATGGTAGGATCGTTGCAAACAGTCCACATGAAAATGGAGCTTTGACATGA

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Protein seq

MNCGPPDQLPPATAPSCFLNLNWDQSMDAAAGGHLDPALSSMVSSPASNSTGALHGISPQPHYGGGTPLSSPPKLNLSMMGQFHHYAAPPQVGGGGGGGGGLPILENLMPMGHLDQFLADPGFAERAARLSGFDARGGGGGGGYGGAGPAQFGLPDAGAAGASKEMELGNTRDESSVSDPAPGGAEIPPKGASDGNARKRKASGKGKGKDSPMSTSAAKEDSSGKRCKSTEESNAAAEENSGKGKAAQSNSENGGGKKQGKDSSSKPPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQLDFNNLPNLLAKDMHQSCSPLQSSHFPLETSGAPLPYINQPQQGNPLGCGLTNGMDNQGSMHPLDPAFCRPMGSHHPFLNGVSDAASQVGAFWQDDLQSVVQMDMGQSQEIATSSNSYNGRIVANSPHENGALT

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OsN22_01G044100_02OsN22_01G044100_01AS39620000 bp39620500 bp39621000 bp39621500 bp39622000 bp39622500 bp39623000 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A5 Chr01 39620317 39620404 - OsN22_01G044100_02 OsN22_01G044100_02,OsN22_01G044100_01 All

Expression

Leaf Root Panicle
FPKM 0.352847 8.761443 8.355876

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0915600 RBH 5.385706 4.890240 11.949523
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g68700 RBH 3.390921 3.047402 2.783619
Nipponbare | IRGSP 1.0 | RAP-db Os01g0915600 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0044790 RBH 1.332214 14.246970 11.251304
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0044340 RBH 0.647834 11.946548 5.482290
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0044710 RBH 2.798195 24.461735 17.899837
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0044170 RBH 0.230497 1.101690 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0043730 RBH 8.291522 32.431271 25.236969
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0658400 RBH 21.464749 46.4687365 13.6964325
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0043370 RBH 0.337515 1.454901 2.332576
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0660300 RBH 27.7611265 21.8465785 60.470972
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0043710 RBH 0.580818 0.149024 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0043670 RBH 1.443767 22.953657 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0043950 RBH 5.496560 35.077633 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0043930 RBH 3.839420 1.886664 2.492399
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0043730 RBH 0.703899 18.392908 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_09G015820 SBH 0.0 4.705503 4.384427
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0043830 RBH 0.737272 27.434748 16.210119
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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