Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0043710 | OGI:01118120 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:41507373-41510502 | ||||||||
| Gene Symbol | OsbHLH090 | ||||||||||
| DNA seq | cagaggggaaaaaaaggggataatttcagcttaaggagatcgatccatggacaggaagaaggatcttaaagatatatatcagctacaaatataatgagaatacaaataatgatattacacgtcgtccctctctgcttgagagggtaaaagggtctgaatgaagcatcatatactgcacccgacttatgtacgatcttgtagcatacatatatatactacacccgactaccgtacatggtgcgtttcatttttgttcaaagaatcattacaccaagatgggaaattagaagctaaaacactgctagggcccaacattgttagggttgaatctcagagtgctgccgcggcaagctgacttctctgtatgtacaatgggcgtcagagctttggatcgaacctttatttggtcatgtcaaagctccattttcatgtggactgtttgcaacgatcctgatccatagcagtttacacattagaattcagttaaggtgacgttaactatggcatcaggtaataggatgaggaaacttgcctaccattgtagctattggaagaggtggcgatctcctgactttgccccatatccatctgaacaacactttggagatcatcttgccagaaagcaccaacctgtaaagcattcattcctcatattcagcatcgattcattcgaacattttgtgagatcgagacattggtgtgcatttttacctgagaagccgcatcgctaaccccattgaggaaaggatggtgcgagcccattggccggcaaaatgccgggtccaatgggtgcatagaaccctggttgtccatgccgttcgtcaggccacaaccgagagggttcccttgctgaggctggttaatgtagggcagcggcgcacctgaggtctctagtggaaaatgtgagctctgtaacgggctgcatgactggtgcatctgatcagggagaaaatcggaaacacgaggtaagttgggaactgtatgattgccacaataagagaggaaacaaatgtagtaatgagatcacataagcttgccctcacatctttagcaaggaggttaggcaaattgttgaagtccagctggggattcacagtggccaacttcatggacaaaaactgcaaaatggatgtgaaaggcaaaggttcagatggcgcacgcccgcgcttgctgcgctctaaatcggcaaaagctacagtttcacaatcattctgcatctgtgaatttgacactggacaaatacctcgacttgccgttgcaacgactgcacatagtttatgatttcatcgagcatgacagcctttccaaccacctgaaacaagtaagcatttcccagtttccaatctgagcacaccgagcaactcaagtaacaaacaggtgggtgatgatgcaaatgatgagtgcttttcttcagttaccttgttacaacccggcacgagatcctgcagcagcttcatcctctggcttatcttctctcttctcacctgaattgatcgaacaagaggagatacacacagcatgttaatgcacagggaagatgatgatcagaagagcaatggaagctagagctgcaagaattttgtgtgtgtaccctctcggcgaggctgtggctgtccgtcgcctcgccgcgccgggcgcggacatggatgtagtccttgggcggctcGgggggcttcgacgagctgtccttcccttgcttcttgccgccgccattctcgctgttgctctgcgcggccttccccttgccggaattctcctcggcggccgcattgctctcctccgtcgatttgcaacgcttgccgctggaatcctcctgcagaacgctcgagagatgaaatctttcggtccaagaatggtgcggcgcggccatggcgagcggaattcggcgcgtaccttggcggcggaggtggacatggggctgtccttgcctttgcccttcccggaggccttccgcttccgtgcattgccgtcggaagcccccttgggcggaatctcggcgccgccgggcgccggatcagacaccgacgactcgtcccgggtgttcccgagctccatctccttcgatgcgccggccgcgccggcgtcagggaggccgaattgcgccgggccggcgccgccgtagcctcctcctccgccgccgccgcgggcgtcgaagccggagagcctcgcggcgcgctcggcgaagccagggtcggcgaggaactggtcgaggtggcccatgggcatcaggttctcgaggattggcaggcccccgcctccgcctccgccgccgcccacctgcggcggcgcggcgtagtggtggaactgccccatcatggacaggttgagcttggggggcgagctgagcggcgtcccgccaccgtagtgcggctgcggcgagatcccgtggagagcgcccgtcgagttggacgccggcgaggacaccatggagctgagcgccgggtcgaggtgccctcccgccgccgcgtccatggactggtcccagttgaggttgaggaagcacgacggcgccgtcgccggcggcaactggtcgggcggcccgcagttcatctcaaagatctgccgcaattctccacgaaacccaaccaaaccacccgaattcccgagctcccaagaacgccccaatccagcaaaagaaacgcgagaggcgagcagccaccaaatcccactacgacgggggtgagggaaggcgagcggagataaggtaaaggcaggagcttttcgtgtgcgtgacaaagcaaggaaaagtgggggaacagtaaaggagtggaaaagaagcacctaaaacaaagcaaaagctttgcaagccaaaaaaaaaaaaaaacagagagagagagagagagagaggagagagctcgcaatcgcaagcagaagcagcagcaagtatagattgggagtgtgagcctacggggagtatgtatataggaccaggatggcatgggtcaaaatggatgggctcatgggcatcatcaccccagcctttcctgccatgaaagaaggaagaagctagagagagaggcactggagatggtagatggagtagtggtggtggtgatggtaggggtagtggtgctgagtttacttgcacaggcaagaggtgagtgaagagaggaagaggggaaaggggaat
More
|
||||||||||
| CDS seq | atgaactgcgggccgcccgaccagttgccgccggcgacggcgccgtcgtgcttcctcaacctcaactgggaccagtccatggacgcggcggcgggagggcacctcgacccggcgctcagctccatggtgtcctcgccggcgtccaactcgacgggcgctctccacgggatctcgccgcagccgcactacggtggcgggacgccgctcagctcgccccccaagctcaacctgtccatgatggggcagttccaccactacgccgcgccgccgcaggtgggcggcggcggaggcggaggcgggggcctgccaatcctcgagaacctgatgcccatgggccacctcgaccagttcctcgccgaccctggcttcgccgagcgcgccgcgaggctctccggcttcgacgcccgcggcggcggcggaggaggaggctacggcggcgccggcccggcgcaattcggcctccctgacgccggcgcggccggcgcatcgaaggagatggagctcgggaacacccgggacgagtcgtcggtgtctgatccggcgcccggcggcgccgagattccgcccaagggggcttccgacggcaatgcacggaagcggaaggcctccgggaagggcaaaggcaaggacagccccatgtccacctccgccgccaaggaggattccagcggcaagcgttgcaaatcgacggaggagagcaatgcggccgccgaggagaattccggcaaggggaaggccgcgcagagcaacagcgagaatggcggcggcaagaagcaagggaaggacagctcgtcgaagcccccCgagccgcccaaggactacatccatgtccgcgcccggcgcggcgaggcgacggacagccacagcctcgccgagagggtgagaagagagaagataagccagaggatgaagctgctgcaggatctcgtgccgggttgtaacaaggtggttggaaaggctgtcatgctcgatgaaatcataaactatgtgcagtcgttgcaacggcaagtcgagtttttgtccatgaagttggccactgtgaatccccagctggacttcaacaatttgcctaacctccttgctaaagatatgcaccagtcatgcagcccgttacagagctcacattttccactagagacctcaggtgcgccgctgccctacattaaccagcctcagcaagggaaccctctcggttgtggcctgacgaacggcatggacaaccagggttctatgcacccattggacccggcattttgccggccaatgggctcgcaccatcctttcctcaatggggttagcgatgcggcttctcaggttggtgctttctggcaagatgatctccaaagtgttgttcagatggatatggggcaaagtcaggagatcgccacctcttccaatagctacaatggatcgttgcaaacagtccacatgaaaatggagctttga
More
|
||||||||||
| Protein seq | MNCGPPDQLPPATAPSCFLNLNWDQSMDAAAGGHLDPALSSMVSSPASNSTGALHGISPQPHYGGGTPLSSPPKLNLSMMGQFHHYAAPPQVGGGGGGGGGLPILENLMPMGHLDQFLADPGFAERAARLSGFDARGGGGGGGYGGAGPAQFGLPDAGAAGASKEMELGNTRDESSVSDPAPGGAEIPPKGASDGNARKRKASGKGKGKDSPMSTSAAKEDSSGKRCKSTEESNAAAEENSGKGKAAQSNSENGGGKKQGKDSSSKPPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQLDFNNLPNLLAKDMHQSCSPLQSSHFPLETSGAPLPYINQPQQGNPLGCGLTNGMDNQGSMHPLDPAFCRPMGSHHPFLNGVSDAASQVGAFWQDDLQSVVQMDMGQSQEIATSSNSYNGSLQTVHMKMEL |
||||||||||
| Function | Transcription factor bHLH62 [UniProtKB/Swiss-Prot:Q9SRT2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0043710 | OsLima_01g0043710.01 | Chr01 | 41507373 | 41510502 | - | NAM | ||
| CDS seq | atgaactgcgggccgcccgaccagttgccgccggcgacggcgccgtcgtgcttcctcaacctcaactgggaccagtccatggacgcggcggcgggagggcacctcgacccggcgctcagctccatggtgtcctcgccggcgtccaactcgacgggcgctctccacgggatctcgccgcagccgcactacggtggcgggacgccgctcagctcgccccccaagctcaacctgtccatgatggggcagttccaccactacgccgcgccgccgcaggtgggcggcggcggaggcggaggcgggggcctgccaatcctcgagaacctgatgcccatgggccacctcgaccagttcctcgccgaccctggcttcgccgagcgcgccgcgaggctctccggcttcgacgcccgcggcggcggcggaggaggaggctacggcggcgccggcccggcgcaattcggcctccctgacgccggcgcggccggcgcatcgaaggagatggagctcgggaacacccgggacgagtcgtcggtgtctgatccggcgcccggcggcgccgagattccgcccaagggggcttccgacggcaatgcacggaagcggaaggcctccgggaagggcaaaggcaaggacagccccatgtccacctccgccgccaaggaggattccagcggcaagcgttgcaaatcgacggaggagagcaatgcggccgccgaggagaattccggcaaggggaaggccgcgcagagcaacagcgagaatggcggcggcaagaagcaagggaaggacagctcgtcgaagcccccCgagccgcccaaggactacatccatgtccgcgcccggcgcggcgaggcgacggacagccacagcctcgccgagagggtgagaagagagaagataagccagaggatgaagctgctgcaggatctcgtgccgggttgtaacaaggtggttggaaaggctgtcatgctcgatgaaatcataaactatgtgcagtcgttgcaacggcaagtcgagtttttgtccatgaagttggccactgtgaatccccagctggacttcaacaatttgcctaacctccttgctaaagatatgcaccagtcatgcagcccgttacagagctcacattttccactagagacctcaggtgcgccgctgccctacattaaccagcctcagcaagggaaccctctcggttgtggcctgacgaacggcatggacaaccagggttctatgcacccattggacccggcattttgccggccaatgggctcgcaccatcctttcctcaatggggttagcgatgcggcttctcaggttggtgctttctggcaagatgatctccaaagtgttgttcagatggatatggggcaaagtcaggagatcgccacctcttccaatagctacaatggatcgttgcaaacagtccacatgaaaatggagctttga
More
|
|||||||
| Protein seq | MNCGPPDQLPPATAPSCFLNLNWDQSMDAAAGGHLDPALSSMVSSPASNSTGALHGISPQPHYGGGTPLSSPPKLNLSMMGQFHHYAAPPQVGGGGGGGGGLPILENLMPMGHLDQFLADPGFAERAARLSGFDARGGGGGGGYGGAGPAQFGLPDAGAAGASKEMELGNTRDESSVSDPAPGGAEIPPKGASDGNARKRKASGKGKGKDSPMSTSAAKEDSSGKRCKSTEESNAAAEENSGKGKAAQSNSENGGGKKQGKDSSSKPPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQLDFNNLPNLLAKDMHQSCSPLQSSHFPLETSGAPLPYINQPQQGNPLGCGLTNGMDNQGSMHPLDPAFCRPMGSHHPFLNGVSDAASQVGAFWQDDLQSVVQMDMGQSQEIATSSNSYNGSLQTVHMKMEL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.580818 | 0.149024 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0915600 | RBH | 5.385706 | 4.890240 | 11.949523 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g68700 | RBH | 3.390921 | 3.047402 | 2.783619 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0915600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0044790 | RBH | 1.332214 | 14.246970 | 11.251304 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0044340 | RBH | 0.647834 | 11.946548 | 5.482290 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0044710 | RBH | 2.798195 | 24.461735 | 17.899837 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0044170 | RBH | 0.230497 | 1.101690 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0043730 | RBH | 8.291522 | 32.431271 | 25.236969 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0658400 | RBH | 21.464749 | 46.4687365 | 13.6964325 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0043370 | RBH | 0.337515 | 1.454901 | 2.332576 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0660300 | RBH | 27.7611265 | 21.8465785 | 60.470972 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0043670 | RBH | 1.443767 | 22.953657 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0043950 | RBH | 5.496560 | 35.077633 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0043930 | RBH | 3.839420 | 1.886664 | 2.492399 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0043730 | RBH | 0.703899 | 18.392908 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G044100 | RBH | 0.352847 | 8.761443 | 8.355876 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0043830 | RBH | 0.737272 | 27.434748 | 16.210119 |
