Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsN22_01G034310 OGI:01097010 | 15/16 N22 | OsN22RS2 | Gramene(+IsoSeq) Chr01:32009032-32013452
Gene Symbol -
DNA seq

AACGGGATAAATGGCGAATCATTCTTGTGTTTCTGAGGTCAAATGGTCAAGTGAACTTCCAGCAAACAACATAAGGTTACTTATTATAATGTCGTAGGACTGTTACTTGTAGCATAACACCGAGCTCTGCCTCATTGTCTGCTATGAGATTCAGCAATAATAACCCCATGAATCATTTGACAGGTGATCAGCTCATAGCTTCACAATCGTCCTACAATAATGGTGATAAAATATTTGCCAATGGATGCTTACTCCCGAAAATGATAGGCCAAGAATTCTATCTGGAAGATCGTATGACGGTTCCAAGCCAATCTTCTGAGCTCGTGTCCCCTTTTAAGGCTCTCAGTGAATGTTCTGTACCAACCTGCATCAGAAGTCACACGGAAAAAGGAAAAAAAAGGGTCATTGAAAATTTTATATACACAAAGTCATGAGGGGAGGAAAAAGTTACCAGACCTTTGTAATATACACATCAACTCCAAGCCTAGCTATCGCAGCAGCTTCCAATATTTTGGTCTCCATTCCGCCAGTGGTGTCATGTGCAGCTACAGATATCTCCACTGCAATGCATATCAGATTATCTTTGTTAGGATTACACAAGCTACAACATACAGTTTATCTTTATTATGCTGGTCAAAAGAACAGTGTGTCTTTATCATGAATTTCATTAGCCCCTGGCTTAAAAGATTATAGCTTTGATCCCAATACTCATATTTCAAACTGTCACTCCTCCATAAGTACAGTATTTGATCCAAATCATTGAGACTTCCAATTTTCTCTGCATAATGCGTAAGAACAAATGATGTATTTGTTCATTAGAAGTTATTAATTGAAAAATCGTCACTGGTAGCTACTTAATCATGTGCCTGTTACGATCTGATAATTTTTTATGTACTTGAACTTGTTACAACGAAAATAGTTGCATCAGTTACTCAGTACAACTGCTATGAGTAACTCAACCACCAGCGTACACATGGAAGGAAGACATAAATTATACCTCCTTTCTTGTTGCCTTTCAATGCTGGTTTTACAATCGACCAGCTGCCATTTTCATCCACCGCTGTTTAAACAGGCAAACAACACAGGTCAGCCTAAGACAGAAAGCAAATGGTAATTGCATATATTTTACTTTTCGTGTGCTCCCTACAATTTCTGATGCATATCAAACAGGAATTCCAGTAGGTGAGTACTGAATGCTAACCTATCTCTCTGAGAAGTACTGCATTCGGGTCTGATGGAGGACGATCATATACTCCATGGACATCTGTCTACATCTCAATTTTCAGAGTGCTATGCAAAAGCAACTATAATGAAGGATGGGCAACATATGCAAAGAGTGGTGCACAGAAATGTGATAGAACAAGGCCTGTCTGATAAGTGATAACAGCAATACGAACTTCAAGTATTAGAATAAAGACATTTCATCCATGTAAATAATTTGATGCACGCACCATCTCACATACATAATATAAATTGTCAAGTCATGGCAAAGGTGAGAAGGCAGCAATACCAGAAATACAACATATTTTGGACTCAGAAGCTGTGCAAGATGGCGTATAATGACATCCCCACTCAAAATGGTGCAGTCCTGGTCATTTAATTATACCACATAAGTCTTGAGAAGTACACAAAATGTGTCATAGTCCAGAGAGACCTCTATGTAAGTGTAAATTAGGACATGGGCGTGATTCAATCCAAAAGCTCACCAGCAATTCATCAAGAACAGCATCTCCATGCAAAACCTGGAAGAAATTTTTTATGTTCTTTTTAATGTAGATGAAGAAAACATAAGTAGAGCTGTGGAAGTATGCAATGCTTTCCCTATTCTTGAAACATTTCCTGAACAAAAGTTTACTCATAGTATGTTCAAATATCTGAACTAATTCATTATTTACCAGTACAAAATCTCAGCTAAGTTGGTATAGAAAATGTATTGCAAAATAGGATGCAACTTAGAAGAATTACCAGTGCACATAACATGTGTAATGAATATGTTACATACTACATAAATATTCCAGAAACGCCATATTTTTCTTACAATATGGATACATAAGAAGTGACCCATATAACTACATTACTTAATATAAAACTTTAGTCGTTGTAAATTCTAGAGAAATAATTATTCAAGATTATGAAGTACAACAACTTACAGGGACAAAGCCAACATGGAGTGATAGCATGATTTGAGAAGCATCCACTGATTCAAGCTGTAAGTGCAAAACTGGAAAGTAAAAAATCAAAGGGCATCTCTGTTGATAGGATTAGACATAGATCTTCAAGAACTTTGCAATGTCAAGTCCATGTCCAAAGAAACAGAAGAAATTTAGTTAATTGTTTGCTTTCTCACATTTCTTTGCTTAGTAGACCATCCACAAGCAAACGGTGACATCCCAACAGACGGTATTCCTTCTACAGAATCATACACAGTTCAAAAAAGACATTTACTTAATTATTAGCTACTGATGATAAACCGACAGCAATAGACTGAAGCAATGCATCAAGATCATATAAAAGATGGATACATATAGTGGTTAGTTCAGGATTAAGATTACATAGGAAAATTGTTCATAACAAATGTCAATGGATCCTTGGATGGCACCACGGGTTAAGTGAAGACCGCACAGTAAAATTCCAGACAAAACACATATATTCTCTAGATTATAATGGAGCATGAGTTTATGACAAAGTAACAAAAATGACCACATAGATATCCTGATAGCACGAAAGAAACATGATTGTGATTCAAATATGAAGAGTGGTCCTTCATCTCAATGTTGTGTACCTCTTGCAAGAGCTCTAACAATCTCCTGGTTGAGAGAAGTGACCTGAATTGTAATATGCAGATCATAAGAATTATTTTTCAAGCATGCGCATCAAAGAAGCACTACATATGTTGACGATATACTGGGCAACAAAGATATATCTCTGAAAGTAAGATGGAGAAAAAAAATATAGATTATAATATGAACGTGAAAGGAGAACTTCAAAAACTAGCCTTACTGAAATTCTTGTAGCCACAAAGCCAGCCTTCACAAGTGTTGAATGAAGACCCCCTTTATGGACTCCAGATCTACTTGCTTGGAAGTGACCAAAAGACCCTGAGGTAGCAGATGTAGGTAGTCAGCTATTACACCACCAAAATCGTGGGCTGTATCCTTTAAACTACAACAGGCCAATTATAGTCGGCCAGTATTACAGGCATCATGAAGTGTGAGCTATTTTCTTTATTCTCCCCTGGTTGCCTAGGACTACATTTTCAAATCAAATCTTTATTGATGCAGTGGAAAGTCCTAAGCAGGAAGGATGCTGAGAAGCTGGAGGCCATGGCTAGCAAACTTATGGAAGCAGTCTCCTCCCTTGGTCCTCCCAGAGCTGGAGTAGGGTAAGCACTGATGCTTTTTCTGTGGTGCTGTTGGTTAGCTGTTATCTGTTGAGTTGTTTAGAGGTGCCTGAGTTGTCTTTTGCTTTTGGTCGCTTAGCTTCAACCCCTTTGTATCCCTTGGCATGGTTTGGTTTCTGCCCTGTTTCTGTGTTTTTGTGCTGAACTCTTGTAAGTGGGTCTCCCCCACCACTGTGCCGCTTCTGGCTTTCTATAAAAGCCGGGCCCGATGGTCTATGATCTAAAAAAAACTATATTTTCAGGGTGTCTACCAATCAAAACAGATTTATTCAAATATATTCCACGAAGGTCAGCTACGTTCCGAATATAGACCGGTTAAGCAGGTCGTGAACAATGTTTACAATTGCTTGTCATTGATACACATTGAGAATGGTACTTGGTTCACAGTTTCGCACCAAATTTTCACTTAGCCGTAGTAGTATTCTGAAACCAAAATACAGCAATCAAGCTGATCCTATCGTCTCCAGATCCCAACCGACCACCGATCCCCCAGTTCTGCTCATGAACTCATCAGCAATACAAAATGACAGATAGGCACAGTTGTTAGTTCAGATGAGGAGCCATGCATACCGGCACCATGGACGACGACGAAGTTGGAGTCGAGCCCCAAGCCTCCCATCTCCGACAAGCCCTCCACATCCACGACCGGGCCGGTCGGATCGCCGGGCCGTCTGCTCCAGTCCATCCCCACAACCTTCCCCGCCGCGCCGCCGTGGGACATGGCCTGCCGCAGCTGCGCGCACGCCGACCGCAAGCTCGCCGCGTCGATGCTCTCCAGCTCTCCCTTGTTCGTGATGGCCGCTCCACCTGCGCCATCGAAGCTGCTAAAGAGGAGCAGAGAGGAAACAAGGGAGCGGCGGAGCGCGCGCGAGTACCGAGTTTGACGATGCAGCGGACGGGGCGGGAGGCGGCGGGGTCCGTCTGCTGCTCCTGCGCCGCCTCCTCCGCCATGGGAGCTTCCTCTCCTCGACCTCGCGCCGGCCAAGGCCTCGGGAGGGAGAGGCGAATCTGGTGCTGTTCA

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CDS seq

ATGGCGGAGGAGGCGGCGCAGGAGCAGCAGACGGACCCCGCCGCCTCCCGCCCCGTCCGCTGCATCGTCAAACTCGGTGGAGCGGCCATCACGAACAAGGGAGAGCTGGAGAGCATCGACGCGGCGAGCTTGCGGTCGGCGTGCGCGCAGCTGCGGCAGGCCATGTCCCACGGCGGCGCGGCGGGGAAGGTTGTGGGGATGGACTGGAGCAGACGGCCCGGCGATCCGACCGGCCCGGTCGTGGATGTGGAGGGCTTGTCGGAGATGGGAGGCTTGGGGCTCGACTCCAACTTCGTCGTCGTCCATGGTGCCGGGTCTTTTGGTCACTTCCAAGCAAGTAGATCTGGAGTCCATAAAGGGGGTCTTCATTCAACACTTGTGAAGGCTGGCTTTGTGGCTACAAGAATTTCAGTCACTTCTCTCAACCAGGAGATTGTTAGAGCTCTTGCAAGAGAAGGAATACCGTCTGTTGGGATGTCACCGTTTGCTTGTGGATGGTCTACTAAGCAAAGAAATCTTGAATCAGTGGATGCTTCTCAAATCATGCTATCACTCCATGTTGGCTTTGTCCCTGTTTTGCATGGAGATGCTGTTCTTGATGAATTGCTGGACTGCACCATTTTGAGTGGGGATGTCATTATACGCCATCTTGCACAGCTTCTGAGTCCAAAATATGTTGTATTTCTGACAGATGTCCATGGAGTATATGATCGTCCTCCATCAGACCCGAATGCAGTACTTCTCAGAGAGATAGCGGTGGATGAAAATGGCAGCTGGTCGATTGTAAAACCAGCATTGAAAGGCAACAAGAAAGGAGTGGAGATATCTGTAGCTGCACATGACACCACTGGCGGAATGGAGACCAAAATATTGGAAGCTGCTGCGATAGCTAGGCTTGGAGTTGATGTGTATATTACAAAGGTTGGTACAGAACATTCACTGAGAGCCTTAAAAGGGGACACGAGCTCAGAAGATTGGCTTGGAACCGTCATACGATCTTCCAGATAG

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Protein seq

MAEEAAQEQQTDPAASRPVRCIVKLGGAAITNKGELESIDAASLRSACAQLRQAMSHGGAAGKVVGMDWSRRPGDPTGPVVDVEGLSEMGGLGLDSNFVVVHGAGSFGHFQASRSGVHKGGLHSTLVKAGFVATRISVTSLNQEIVRALAREGIPSVGMSPFACGWSTKQRNLESVDASQIMLSLHVGFVPVLHGDAVLDELLDCTILSGDVIIRHLAQLLSPKYVVFLTDVHGVYDRPPSDPNAVLLREIAVDENGSWSIVKPALKGNKKGVEISVAAHDTTGGMETKILEAAAIARLGVDVYITKVGTEHSLRALKGDTSSEDWLGTVIRSSR

Function Isopentenyl phosphate kinase [UniProtKB/Swiss-Prot:Q8H1F7]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsN22_01G034310 OsN22_01G034310_03 Chr01 32009032 32013452 - NAM
CDS seq

ATGTCCCACGGCGGCGCGGCGGGGAAGGTTGTGGGGATGGACTGGAGCAGACGGCCCGGCGATCCGACCGGCCCGGTCGTGGATGTGGAGGGCTTGTCGGAGATGGGAGGCTTGGGGCTCGACTCCAACTTCGTCGTCGTCCATGGTGCCGGGTCTTTTGGTCACTTCCAAGCAAGTAGATCTGGAGTCCATAAAGGGGGTCTTCATTCAACACTTGTGAAGGCTGGCTTTGTGGCTACAAGAATTTCAGTCACTTCTCTCAACCAGGAGATTGTTAGAGCTCTTGCAAGAGAAGGAATACCGTCTGTTGGGATGTCACCGTTTGCTTGTGGATGGTCTACTAAGCAAAGAAATCTTGAATCAGTGGATGCTTCTCAAATCATGCTATCACTCCATGTTGGCTTTGTCCCTGTTTTGCATGGAGATGCTGTTCTTGATGAATTGCTGGACTGCACCATTTTGAGTGGGGATGTCATTATACGCCATCTTGCACAGCTTCTGAGTCCAAAATATGTTGTATTTCTGACAGATGTCCATGGAGTATATGATCGTCCTCCATCAGACCCGAATGCAGTACTTCTCAGAGAGATAGCGGTGGATGAAAATGGCAGCTGGTCGATTGTAAAACCAGCATTGAAAGGCAACAAGAAAGGAGTGGAGATATCTGTAGCTGCACATGACACCACTGGCGGAATGGAGACCAAAATATTGGAAGCTGCTGCGATAGCTAGGCTTGGAGTTGATGTGTATATTACAAAGGTTGGTACAGAACATTCACTGAGAGCCTTAAAAGGGGACACGAGCTCAGAAGATTGGCTTGGAACCGTCATACGATCTTCCAGATAG

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Protein seq

MSHGGAAGKVVGMDWSRRPGDPTGPVVDVEGLSEMGGLGLDSNFVVVHGAGSFGHFQASRSGVHKGGLHSTLVKAGFVATRISVTSLNQEIVRALAREGIPSVGMSPFACGWSTKQRNLESVDASQIMLSLHVGFVPVLHGDAVLDELLDCTILSGDVIIRHLAQLLSPKYVVFLTDVHGVYDRPPSDPNAVLLREIAVDENGSWSIVKPALKGNKKGVEISVAAHDTTGGMETKILEAAAIARLGVDVYITKVGTEHSLRALKGDTSSEDWLGTVIRSSR

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Gene Transcript Chromosome Start End Strand Source
OsN22_01G034310 OsN22_01G034310_01 Chr01 32009032 32013452 - NAM
CDS seq

ATGTCCCACGGCGGCGCGGCGGGGAAGGTTGTGGGGATGGACTGGAGCAGACGGCCCGGCGATCCGACCGGCCCGGTCGTGGATGTGGAGGGCTTGTCGGAGATGGGAGGCTTGGGGCTCGACTCCAACTTCGTCGTCGTCCATGGTGCCGGGTCTTTTGGTCACTTCCAAGCAAGTAGATCTGGAGTCCATAAAGGGGGTCTTCATTCAACACTTGTGAAGGCTGGCTTTGTGGCTACAAGAATTTCAGTCACTTCTCTCAACCAGGAGATTGTTAGAGCTCTTGCAAGAGAAGGAATACCGTCTGTTGGGATGTCACCGTTTGCTTGTGGATGGTCTACTAAGCAAAGAAATCTTGAATCAGTGGATGCTTCTCAAATCATGCTATCACTCCATGTTGGCTTTGTCCCTGTTTTGCATGGAGATGCTGTTCTTGATGAATTGCTGGACTGCACCATTTTGAGTGGGGATGTCATTATACGCCATCTTGCACAGCTTCTGAGTCCAAAATATGTTGTATTTCTGACAGATGTCCATGGAGTATATGATCGTCCTCCATCAGACCCGAATGCAGTACTTCTCAGAGAGATAGCGGTGGATGAAAATGGCAGCTGGTCGATTGTAAAACCAGCATTGAAAGGCAACAAGAAAGGAGTGGAGATATCTGTAGCTGCACATGACACCACTGGCGGAATGGAGACCAAAATATTGGAAGCTGCTGCGATAGCTAGGCTTGGAGTTGATGTGTATATTACAAAGGTTGGTACAGAACATTCACTGAGAGCCTTAAAAGGGGACACGAGCTCAGAAGATTGGCTTGGAACCGTCATACGATCTTCCAGATAG

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Protein seq

MSHGGAAGKVVGMDWSRRPGDPTGPVVDVEGLSEMGGLGLDSNFVVVHGAGSFGHFQASRSGVHKGGLHSTLVKAGFVATRISVTSLNQEIVRALAREGIPSVGMSPFACGWSTKQRNLESVDASQIMLSLHVGFVPVLHGDAVLDELLDCTILSGDVIIRHLAQLLSPKYVVFLTDVHGVYDRPPSDPNAVLLREIAVDENGSWSIVKPALKGNKKGVEISVAAHDTTGGMETKILEAAAIARLGVDVYITKVGTEHSLRALKGDTSSEDWLGTVIRSSR

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Gene Transcript Chromosome Start End Strand Source
OsN22_01G034310 OsN22_01G034310_02 Chr01 32009032 32013452 - NAM
CDS seq

ATGGCGGAGGAGGCGGCGCAGGAGCAGCAGACGGACCCCGCCGCCTCCCGCCCCGTCCGCTGCATCGTCAAACTCGGTGGAGCGGCCATCACGAACAAGGGAGAGCTGGAGAGCATCGACGCGGCGAGCTTGCGGTCGGCGTGCGCGCAGCTGCGGCAGGCCATGTCCCACGGCGGCGCGGCGGGGAAGGTTGTGGGGATGGACTGGAGCAGACGGCCCGGCGATCCGACCGGCCCGGTCGTGGATGTGGAGGGCTTGTCGGAGATGGGAGGCTTGGGGCTCGACTCCAACTTCGTCGTCGTCCATGGTGCCGGGTCTTTTGGTCACTTCCAAGCAAGTAGATCTGGAGTCCATAAAGGGGGTCTTCATTCAACACTTGTGAAGGCTGGCTTTGTGGCTACAAGAATTTCAGTCACTTCTCTCAACCAGGAGATTGTTAGAGCTCTTGCAAGAGAAGGAATACCGTCTGTTGGGATGTCACCGTTTGCTTGTGGATGGTCTACTAAGCAAAGAAATCTTGAATCAGTGGATGCTTCTCAAATCATGCTATCACTCCATGTTGGCTTTGTCCCTGTTTTGCATGGAGATGCTGTTCTTGATGAATTGCTGGACTGCACCATTTTGAGTGGGGATGTCATTATACGCCATCTTGCACAGCTTCTGAGTCCAAAATATGTTGTATTTCTGACAGATGTCCATGGAGTATATGATCGTCCTCCATCAGACCCGAATGCAGTACTTCTCAGAGAGATAGCGGTGGATGAAAATGGCAGCTGGTCGATTGTAAAACCAGCATTGAAAGGCAACAAGAAAGGAGTGGAGATATCTGTAGCTGCACATGACACCACTGGCGGAATGGAGACCAAAATATTGGAAGCTGCTGCGATAGCTAGGCTTGGAGTTGATGTGTATATTACAAAGGTTGGTACAGAACATTCACTGAGAGCCTTAAAAGGGGACACGAGCTCAGAAGATTGGCTTGGAACCGTCATACGATCTTCCAGATAG

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Protein seq

MAEEAAQEQQTDPAASRPVRCIVKLGGAAITNKGELESIDAASLRSACAQLRQAMSHGGAAGKVVGMDWSRRPGDPTGPVVDVEGLSEMGGLGLDSNFVVVHGAGSFGHFQASRSGVHKGGLHSTLVKAGFVATRISVTSLNQEIVRALAREGIPSVGMSPFACGWSTKQRNLESVDASQIMLSLHVGFVPVLHGDAVLDELLDCTILSGDVIIRHLAQLLSPKYVVFLTDVHGVYDRPPSDPNAVLLREIAVDENGSWSIVKPALKGNKKGVEISVAAHDTTGGMETKILEAAAIARLGVDVYITKVGTEHSLRALKGDTSSEDWLGTVIRSSR

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr01 32013215 32013307 - OsN22_01G034310_02 OsN22_01G034310_03,OsN22_01G034310_02 All
RI Chr01 32013002 32013452 - OsN22_01G034310_01 OsN22_01G034310_01,OsN22_01G034310_02 All
RI Chr01 32013002 32013452 - OsN22_01G034310_01 OsN22_01G034310_01,OsN22_01G034310_03 All

Expression

Leaf Root Panicle
FPKM 1.117471 7.498374 2.756531

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0764600 RBH 1.701681 1.287341 1.294372
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g55890 RBH 1.296183 1.220338 0.333782
Nipponbare | IRGSP 1.0 | RAP-db Os01g0764600 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0034760 RBH 0.794225 0.000000 6.665044
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0034290 RBH 0.547421 1.531503 2.270293
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0034700 RBH 0.941278 4.907104 4.984315
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0034020 RBH 0.349719 0.544091 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0033770 RBH 5.195706 9.867668 6.745101
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0534800 RBH 3.5990775 1.9643345 2.850724
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0033510 RBH 0.324642 1.387041 1.271645
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0530300 SBH 6.702926 5.2628705 11.107777
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0033670 RBH 0.791838 0.035700 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0033720 RBH 1.174751 10.851428 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0033980 RBH 0.000000 19.027964 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0034020 RBH 1.073481 0.774381 1.590511
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0033870 RBH 0.371688 2.367800 None
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0033970 RBH 0.000000 8.594849 2.801628
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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