Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0033670 | OGI:01097010 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:33747914-33752278 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccagcaaacaaaataaggttacttattataatgtcgtaggactgttacttgtagcataacaccgagctctgcctcattgtctgctatgagattcagcaataataaccccatgaatcatttgacaggtgatcagctcatagcttcacaatcgtcctacaataatggtgataaaatatttgccaatggatgcttactcccgaaaatgataggccaagaattctatctggaagatcgtatgacggttccaagccaatcttctgagctcgtgtccccttttaaggctctcagtgaatgttctgtaccaacctgcatcagaagtcacacggaaaaaggaaaaaaaagggtcattgaaaattttatatacacaaagtcatgaggggaggaaaaagttaccagacctttgtaatatacacatcaactccaagcctagctatcgcagcagcttccaatattttggtctccattccgccagtggtgtcatgtgcagctacagatatctccactgcaatgcatatcagattatctttgttaggattacacaagctacaacatacagtttatctttattatgctggtcaaaagaacagtgtgtctttatcatgaatttcattagcccctggcttaaaagattatagctttgatcccaatactcatatttcaaactgtcactcctccataagtacagtatttgatccaaatcattgagacttccaattttctctgcataatgcgtaagaacaaatgatgtatttgttcattagaagttattaattgaaaaatcgtcactggtagctacttaatcatgtgcctgttacgatctgataattttttatgtacttgaacttgttacaacgaaaatagttgcatcagttactcagtacaactgctatgagtaactcaaccaccagcgtacacatggaaggaagacataaattatacctcctttcttgttgcctttcaatgctggttttacaatcgaccagctgccattttcatccaccgctgtttaaacaggcaaacaacacaggtcagcctaagacagaaagcaaatggtaattgcatatattttacttttcgtgtgctccctacaatttctgatgcatatcaaacaggaattccagtaggtgagtactgaatgctaacctatctctctgagaagtactgcattcgggtctgatggaggacgatcatatactccatggacatctgtctacatctcaattttcagagtgctatgcaaaagcaactataatgaaggatgggcaacatatgcaaagagtggtgcacagaaatgtgatagaacaaggcctgtctgataagtgataacagcaatacgaacttcaagtattagaataaagacatttcatccatgtaaataatttgatgcacgcaccatctcacatacataatataaattgtcaagtcatggcaaaggtgagaaggcagcaataccagaaatacaacatattttggactcagaagctgtgcaagatggcgtataatgacatccccactcaaaatggtgcagtcctggtcatttaattataccacataagtcttgagaagtacacaaaatgtgtcatagtccagagagacctctatgtaagtgtaaattaggacatgggcgtgattcaatccaaaagctcaccagcaattcatcaagaacagcatctccatgcaaaacctggaagaaattttttatgttctttttaatgtagatgaagaaaacataagtagagctgtggaagtatgcaatgctttccctattcttgaaacatttcctgaacaaaagtttactcatagtatgttcaaatatctgaactaattcattatttaccagtacaaaatctcagctaagttggtatagaaaatgtattgcaaaataggatgcaacttagaagaattaccagtgcacataacatgtgtaatgaatatgttacatactacataaatattccagaaacgccatatttttcttacaatatggatacataagaagtgacccatataactacattacttaatataaaactttagtcgttgtaaattctagagaaataattattcaagattatgaagtacaacaacttacagggacaaagccaacatggagtgatagcatgatttgagaagcatccactgattcaagctgtaagtgcaaaactggaaagtaaaaaatcaaagggcatctctgttgataggattagacatagatcttcaagaactttgcaatgtcaagtccatgtccaaagaaacagaagaaatttagttaattgtttgctttctcacatttctttgcttagtagaccatccacaagcaaacggtgacatcccaacagacggtattccttctacagaatcatacacagttcaaaaaagacatttacttaattattagctactgatgataaaccgacagcaatagactgaagcaatgcatcaagatcatataaaagatggatacatatagtggttagttcaggattaagattacataggaaaattgttcataacaaatgtcaatggatccttggatggcaccacgggttaagtgaagaccgcacagtaaaattccagacaaaacacatatattctctagattataatggagcatgagtttatgacaaagtaacaaaaatgaccacatagatatcctgatagcacgaaagaaacatgattgtgattcaaatatgaagagtggtccttcatctcaatgttgtgtacctcttgcaagagctctaacaatctcctggttgagagaagtgacctgaattgtaatatgcagatcataagaattatttttcaagcatgcgcatcaaagaagcactacatatgttgacgatatactgggcaacaaagatatatctctgaaagtaagatggagaaaaaaaatatagattataatatgaacgtgaaaggagaacttcaaaaactagccttactgaaattcttgtagccacaaagccagccttcacaagtgttgaatgaagaccccctttatggactccagatctacttgcttggaagtgaccaaaagaccctgaggtagcagatgtaggtagtcagctattacaccaccaaaatcgtgggctgtatcctttaaactacaacaggccaattatagtcggccagtattacaggcatcatgaagtgtgagctattttctttattctcccctggttgcctaggactacattttcaaatcaaatctttattgatgcagtggaaagtcctaagcaggaaggatgctgagaagctggaggccatggctagcaaacttatggaagcagtctcctcccttggtcctcccagagctggagtagggtaagcactgatgctttttctgtggtgctgttggttagctgttatctgttgagttgtttagaggtgcctgagttgtcttttgcttttggtcgcttagcttcaacccctttgtatcccttggcatggtttggtttctgccctgtttctgtgtttttgtgctgaactcttgtaagtgggtctcccccaccactgtgccgcttctggctttctataaaagccgggcccgatggtctatgatctaaaaaaaactatattttcagggtgtctaccaatcaaaacagatttattcaaatatattccacgaaggtcagctacgttccgaatatagaccggttaagcaggtcgtgaacaatgtttacaattgcttgtcattgatacacattgagaatggtacttggttcacagtttcgcaccaaattttcacttagccgtagtagtattctgaaaccaaaatacagcaatcaagctgatcctatcgtctccagatcccaaccgaccaccgatcccccagttctgctcatgaactcatcagcaatacaaaatgacagataggcacagttgttagttcagatgaggagccatgcataccggcaccatggacgacgacgaagttggagtcgagccccaagcctcccatctccgacaagccctccacatccacgaccgggccggtcggatcgccgggccgtctgctccagtccatccccacaaccttccccgccgcgccgccgtgggacatggcctgccgcagctgcgcgcacgccgaccgcaagctcgccgcgtcgatgctctccagctctcccttgttcgtgatggccgctccacctgcgccatcgaagctgctaaagaggagcagagaggaaacaagggagcggcggagcgcgcgcgagtaccgagtttgacgatgcagcggacggggcgggaggcggcggggtccgtctgctgctcctgcgccgcctcctccgccatgggagcttcctctcctcgacctcgcgccggccaaggcctcgggagggagaggcgaatctggtgctgttcagt
More
|
||||||||||
| CDS seq | atggcggaggaggcggcgcaggagcagcagacggaccccgccgcctcccgccccgtccgctgcatcgtcaaactcggtggagcggccatcacgaacaagggagagctggagagcatcgacgcggcgagcttgcggtcggcgtgcgcgcagctgcggcaggccatgtcccacggcggcgcggcggggaaggttgtggggatggactggagcagacggcccggcgatccgaccggcccggtcgtggatgtggagggcttgtcggagatgggaggcttggggctcgactccaacttcgtcgtcgtccatggtgccgggtcttttggtcacttccaagcaagtagatctggagtccataaagggggtcttcattcaacacttgtgaaggctggctttgtggctacaagaatttcagtcacttctctcaaccaggagattgttagagctcttgcaagagaaggaataccgtctgttgggatgtcaccgtttgcttgtggatggtctactaagcaaagaaatttttgcacttacagcttgaatcagtggatgcttctcaaatcatgctatcactccatgttggctttgtccctgaaatgtttcaagaatagggaaagcattgcatacttccacagctctacttatgttttcttcatctacattaaaaagaacataaaaaatttcttccaggttttgcatggagatgctgttcttgatgaattgctggactgcaccattttgagtggggatgtcattatacgccatcttgcacagcttctgagtccaaaatatgttgtatttctgacagatgtccatggagtatatgatcgtcctccatcagacccgaatgcagtacttctcagagagatagcggtggatgaaaatggcagctggtcgattgtaaaaccagcattgaaaggcaacaagaaaggagtggagatatctgtagctgcacatgacaccactggcggaatggagaccaaaatattggaagctgctgcgatagctaggcttggagttgatgtgtatattacaaaggttggtacagaacattcactgagagccttaaaaggggacacgagctcagaagattggcttggaaccgtcatacgatcttccagatag
More
|
||||||||||
| Protein seq | MAEEAAQEQQTDPAASRPVRCIVKLGGAAITNKGELESIDAASLRSACAQLRQAMSHGGAAGKVVGMDWSRRPGDPTGPVVDVEGLSEMGGLGLDSNFVVVHGAGSFGHFQASRSGVHKGGLHSTLVKAGFVATRISVTSLNQEIVRALAREGIPSVGMSPFACGWSTKQRNFCTYSLNQWMLLKSCYHSMLALSLKCFKNRESIAYFHSSTYVFFIYIKKNIKNFFQVLHGDAVLDELLDCTILSGDVIIRHLAQLLSPKYVVFLTDVHGVYDRPPSDPNAVLLREIAVDENGSWSIVKPALKGNKKGVEISVAAHDTTGGMETKILEAAAIARLGVDVYITKVGTEHSLRALKGDTSSEDWLGTVIRSSR |
||||||||||
| Function | Isopentenyl phosphate kinase [UniProtKB/Swiss-Prot:Q8H1F7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0033670 | OsLima_01g0033670.01 | Chr01 | 33747916 | 33752261 | - | NAM | ||
| CDS seq | atggcggaggaggcggcgcaggagcagcagacggaccccgccgcctcccgccccgtccgctgcatcgtcaaactcggtggagcggccatcacgaacaagggagagctggagagcatcgacgcggcgagcttgcggtcggcgtgcgcgcagctgcggcaggccatgtcccacggcggcgcggcggggaaggttgtggggatggactggagcagacggcccggcgatccgaccggcccggtcgtggatgtggagggcttgtcggagatgggaggcttggggctcgactccaacttcgtcgtcgtccatggtgccgggtcttttggtcacttccaagcaagtagatctggagtccataaagggggtcttcattcaacacttgtgaaggctggctttgtggctacaagaatttcagtcacttctctcaaccaggagattgttagagctcttgcaagagaaggaataccgtctgttgggatgtcaccgtttgcttgtggatggtctactaagcaaagaaatttttgcacttacagcttgaatcagtggatgcttctcaaatcatgctatcactccatgttggctttgtccctgaaatgtttcaagaatagggaaagcattgcatacttccacagctctacttatgttttcttcatctacattaaaaagaacataaaaaatttcttccaggttttgcatggagatgctgttcttgatgaattgctggactgcaccattttgagtggggatgtcattatacgccatcttgcacagcttctgagtccaaaatatgttgtatttctgacagatgtccatggagtatatgatcgtcctccatcagacccgaatgcagtacttctcagagagatagcggtggatgaaaatggcagctggtcgattgtaaaaccagcattgaaaggcaacaagaaaggagtggagatatctgtagctgcacatgacaccactggcggaatggagaccaaaatattggaagctgctgcgatagctaggcttggagttgatgtgtatattacaaaggttggtacagaacattcactgagagccttaaaaggggacacgagctcagaagattggcttggaaccgtcatacgatcttccagatag
More
|
|||||||
| Protein seq | MAEEAAQEQQTDPAASRPVRCIVKLGGAAITNKGELESIDAASLRSACAQLRQAMSHGGAAGKVVGMDWSRRPGDPTGPVVDVEGLSEMGGLGLDSNFVVVHGAGSFGHFQASRSGVHKGGLHSTLVKAGFVATRISVTSLNQEIVRALAREGIPSVGMSPFACGWSTKQRNFCTYSLNQWMLLKSCYHSMLALSLKCFKNRESIAYFHSSTYVFFIYIKKNIKNFFQVLHGDAVLDELLDCTILSGDVIIRHLAQLLSPKYVVFLTDVHGVYDRPPSDPNAVLLREIAVDENGSWSIVKPALKGNKKGVEISVAAHDTTGGMETKILEAAAIARLGVDVYITKVGTEHSLRALKGDTSSEDWLGTVIRSSR
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0033670 | OsLima_01g0033670.02 | Chr01 | 33747914 | 33752278 | - | IsoSeq | ||
| CDS seq | ctgaacagcaccagattcgcctctccctcccgaggccttggccggcgcgaggtcgaggagaggaagctcccatggcggaggaggcggcgcaggagcagcagacggaccccgccgcctcccgccccgtccgctgcatcgtcaaactcggtggagcggccatcacgaacaagggagagctggagagcatcgacgcggcgagcttgcggtcggcgtgcgcgcagctgcggcaggccatgtcccacggcggcgcggcggggaaggttgtggggatggactggagcagacggcccggcgatccgaccggcccggtcgtggatgtggagggcttgtcggagatgggaggcttggggctcgactccaacttcgtcgtcgtccatggtgccgggtcttttggtcacttccaagcaagtagatctggagtccataaagggggtcttcattcaacac
More
|
|||||||
| Protein seq | LNSTRFASPSRGLGRREVEERKLPWRRRRRRSSRRTPPPPAPSAASSNSVERPSRTRESWRASTRRACGRRARSCGRPCPTAARRGRLWGWTGADGPAIRPARSWMWRACRRWEAWGSTPTSSSSMVPGLLVTSKQVDLESIKGVFIQH |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 33749597 | 33750006 | - | OsLima_01g0033670.01 | OsLima_01g0033670.02,OsLima_01g0033670.01 | All |
| A3 | Chr01 | 33750062 | 33750203 | - | OsLima_01g0033670.01 | OsLima_01g0033670.02,OsLima_01g0033670.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.791838 | 0.035700 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0764600 | RBH | 1.701681 | 1.287341 | 1.294372 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g55890 | RBH | 1.296183 | 1.220338 | 0.333782 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0764600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0034760 | RBH | 0.794225 | 0.000000 | 6.665044 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0034290 | RBH | 0.547421 | 1.531503 | 2.270293 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0034700 | RBH | 0.941278 | 4.907104 | 4.984315 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0034020 | RBH | 0.349719 | 0.544091 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0033770 | RBH | 5.195706 | 9.867668 | 6.745101 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0534800 | SBH | 3.5990775 | 1.9643345 | 2.850724 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0033510 | RBH | 0.324642 | 1.387041 | 1.271645 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0530300 | SBH | 6.702926 | 5.2628705 | 11.107777 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0033720 | RBH | 1.174751 | 10.851428 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0033980 | RBH | 0.000000 | 19.027964 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0034020 | RBH | 1.073481 | 0.774381 | 1.590511 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0033870 | RBH | 0.371688 | 2.367800 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G034310 | RBH | 1.117471 | 7.498374 | 2.756531 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0033970 | RBH | 0.000000 | 8.594849 | 2.801628 |
