Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_12G0350300 | OGI:12067150 | 15/16 | Minghui 63 | MH63RS3 | HZAU | Chr12:24827193-24831608 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACCTTCTGGACCACTCTTCCAACGTTTCATTGTCCTTGTGATGGTCCATTTCATCAGTCATCCCAATGAGCAATGCCCTTTTGGGACAAATCCTCTTAACAGCATCCAGTGTCTGCATGGCATCATAGTATTAAAATTTAGCATGAGAAACCAGTTAGCTTTGAGGAGATAATAAAACAAATTGCTCAGGTCATTCAATAGAAATCCAACCTGATCCCAACAAAGATGGACATTATGAGAACCAGTCTGTTCACATAGAGAGATAACGTCAGCCCACAACAGATCAGTACGAACAATGATACAACCTATTTTGCCTAACTAATGCAAATTTCAAGTAATCAGTGACGATGTTCACGTGAATTGCAACAAGCATGACATGTGTTGAAACAAGATTAAAGCAGTATTCATGTTTGGCATATGCCAGCTCTGATCTTCTCTTGATGAATTGCAATTGACAGAATGGTTGTCTAGAAACAAGTATGAAACATGAAATTAAAAGGGAAAACATCCATCACTCACAACTTAAGGAATTGAAGAAACTCACCCTACTAAGGCAATCCAATATGAGCAAATCCAGCTGACCCCCTCCAGACTTTGAAATTGCTGAAAGGTAGGCATATGTACACAATGATGAGGTCCTGGGTAATGAAAACAAGATAGAAAGGAAATAAACTGACCAGATTCCTAGCTATTTCCAATGCAAACAATAAACAAGTATGCTTGCATGCATCTCCAAGAGAGAAGGGTTTATGGATAAATATTTCCTTCCCAATCTCCATGGTTAAGTACACATGTCCATAGACCAAAATTGCATTATAGTCTATGCTAGAGGGGGCACTGATTTATGTGGTGAGCACCAAGCCATCAAGCGGAGAATTACCAATCAGTACCAGCATGAGTGCATAGCAGCCAAAGCAAAACGAATATAGTATATGACCTAGAACTAAAAATGCATAAAATGATTGTCCTCAATAGTCAATTCAAACAACTATATGACTAGATGAGATCAAGCATTTCTTTACTAAATATATCATATTACAATATTAGATACAACTGATGCATGTCTGCATATATCTAGTCATAATAGATCATGATGAGGCAATGGGTGTAGAACACGCCATCACCCCTAACTCCTAACTTTAACAAGAAAGATAAAGAAATAAACCAGGCTGGTACTAGTTGAATTTATTATGACAAAAATATAGAACAAGTGATTATTGCCCTATGGTCTCATGTCAGGATATTTATTCCCAGAAGGTAATCACAGGCACGGTAACTATTCAGCATTAGGAGGCGAAGGTATACTATGTTCTGTGCTTGGAGGAAACCGTGAAACGTCTGATATATAAGCAACTTTTGATTTTCTTCCAAAAAGGAAACCCACACAAATGTAGTCCTCACCATGGATCACCTAAGAGATATACAAAAGTAAGGAAAATGGAAGGAGCAAAATAACACAGAGGGTGATAGAAAAATGCAAACATTACCGGAAGGGGAACAAACTCTAGCCCTGAGGTCACAAATGGTATCTGAAGATCACTCTCGATTACTCTCCAGTCAAGCTGAGCAACTCGCCGAACCTCCTCCCCTTCCTTTAGTTTCTTTCTGACCAAGTAAGGAAACTTTTGGGCAATGCTGTTCCAAATTAAACGTGTAAGTTAGTACAAATCATCACTTACATTCCCACTTAATGACAGTTGGCAGGTGCGAAACAATGATGAAACACGAGAAGAGCGAGGCGATTCAAACATTATTCATCGTGAATACCTCCAGTAGGGAAGAGTTCTGGAAATAAAAAGTCAAAAGAAAACAATATATCTTTGGAACACCATTTTAATCAAAGTTTCTTTGACAAGTTAGGCCAGTTCCTTTCCAAACGTTCGGAGCATACCAAACAAGTCAATACTTCTATCAAGCCTAGAAAGGGTTTGCTTTCCCTAAATAACTAGGACAAGAATCCACATGACCACAAAAAGGAGTTTATCAACTATCAACAATGACATATTAAACATGATGTATTTAATATGTTTTACTTTGTTGACCGAATTTCCATAATGCTGTAACTTGACAAGTTTTATATTCGCTGTACTAATTTTACGGTTATTAAGTTGCCAATTAATCTAATATTTCTGACTGGTACACAAGCAGGTCTGCACTGCACACAACACGAGGAAAAAGATTACTGTAGGTGGCAATTACAGCATAATACTTTAGTTGAAAGAATAAAACAAAACAAAGAGTAAACAATGTTAAAATAGTTAATGTGGCACAAATCCAAAAGTAATTAAACTTTAGCATAGCAAGAGCTGCAAGACTCAAAAAGTGCACGGCATGTACACTTGACAAAGCTCAATTATAATTCATTACCTGTCCATAGCAAATTGGGATAGATAAATTGGAGTTGGTTCAATATCATTCGTAGGACTAAATGACTGTACAATCCGAACATCATCAAGACCCAAGACTGCATCAGCATGCTCATGAGTCAGAATAATCTGTAATGAATAATTAAAATGTGTTAGTGTAGGCATAAACATTGAGCATTTTTGTTATTATTTTACGGTAGATTCATCCACCGAAGCAGCTCTTATTCATAGAAGTGAGAAGTTGAAGCAAAAAGAAAAAAAAAAAAGAAAAGGAACTCACAGAATCAACACAAGGGATTTTATGATGGACAAACCACCGTAGAACTTGTTCTCGGAATGTCTTCCCAACATCAATTAGAATATATTTGTGTGCATTTTCATCTTGGCAATAGTCAATCAGAAGAGAAGTATTGCACCTGTGCGAGCCAAAGTATTAATATAGTCCCAGAAAAATGACACATAAGCATAATGTTGCCATCAACCATTGTTTGTGCAATAATATTCCAAAACATCTGAGAAATAAGCATGGTGAGCAACTAAATGTTAAGGCTGACAATTACCAAAAGGGGAAGGAAGAAGCTAAGAATCGGTTGGCTAGTTGGCTCCAAATGGACGTGATATGCATGATACAAACTAAGGGGGAGTTTAGATCCAGGGGTGTAAAGTTTTGGCGTGTCACGTTGGGTATTATATAGGGTGTCGCATGGGGTGTTCGGGCACTAATAAAAAAACTAATTACATAATCCGTCAGTAAACCGTGAGACGAATTTATTAAGCCTAATTAATCCGTCAGTAGCAAATGTTTACTGTAGCACCACATTGTCAAATCATGGAGCAATTAGGCTTAAAAGATTCGTCTTGCAAATTAGTCGCAATCTGTGCAATTAGTTATTTTTTTAGCCTATATATTTAATACTTCATGCAGGTGTTCAAAAGTTCGATGTGACAGGGTGAAAAGTTTTGGGGTGGGATCTAAACAGGGCCTAAGCCAACTAAGAAATAAATCTAGGCATATAGAAGGCATTGACCAAGAGTATTAAATGCATATATGAGCATAGATGAAGTGCCTTTTACATTCAAAGATAAGTATGTATATATTTGACTCTAAGACTGATTGGTTGGTGCAAGTAACATCACCCAATATCCAGTAAAAAAATTCCTCGAAATTTTTTTAACATAAACACAAGACAAGAAAAATAAGTCACTAGCTCTGCTTCCATGACATTGCACAGTAGCATCTTGAAATTGTGCTCCTTGTTTCTCAGTTTCTGCATACTGAAATATAGATATCTCACCACTGTGAGTCCATCTTATTAAAATTCCAGCATATTGTTTACTCTTACAGAAGTTGAGCATGACCCACTAAGAGTACTGATTGATTGTCGAGTCAAAAAATTCCGATCAATATCTTGAGCATGCCATAACACATACTGTAGGTTCTCCTAATTCTCGAAGTATCATTAACTTAAACAATCACTCGGAATTCACTTTGCATACTACTGCTACCATCTGCTGCACAGTTGCAGCAAGCAGCCAAGTAGAAACCAGCGCCCATATTCTGCACAGAATCAGTGCGTGTGAATCTACATTCTACAACAACACAGGCACCTCTCTCATCAACATTTCTCAGCTCTCGAGCGTACCAATCATACAACGCACAAAATCCCATTCCAAAACTCCCAATCCATCCCCACGATGATCTCTGATCCACACCGACCCCGTCAAATCTCTCAAACAAACAAACCCCAAGCCGCAACGCATCAGCAGCAGCAAACGTGACCGACACCGCCCGATTCCCTAGAGGAAGAATGGATGTATATATACCTGTAGTTAGGGTTTAGCTCGGGGAGCACGGAGAGGAACTGGGAGCAGACGGCGCAGGGCGGGTCGGGGGGCTGGATCAGGCACCGAGCGTTGGGCACGGCGCTGGAGCAGCCCGTCCCGAGGAACACCAGCGAGGATGAGGAGGGCGGCGGCGGCGGCGGTGGCGTCCCTCCTTCGCCGGTGGCGGTGGCGGCGCCGTGTCCGTTGGGGACGGAGGAGGCCAT
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| CDS seq | ATGGCCTCCTCCGTCCCCAACGGACACGGCGCCGCCACCGCCACCGGCGAAGGAGGGACGCCACCGCCGCCGCCGCCGCCCTCCTCATCCTCGCTGGTGTTCCTCGGGACGGGCTGCTCCAGCGCCGTGCCCAACGCTCGGTGCCTGATCCAGCCCCCCGACCCGCCCTGCGCCGTCTGCTCCCAGTTCCTCTCCGTGCTCCCCGAGCTAAACCCTAACTACAGAATATGGGCGCTGGTTTCTACTTGGCTGCTTGCTGCAACTGTGCAGCAGATGGTAGCAGTAATTATTCTGACTCATGAGCATGCTGATGCAGTCTTGGGTCTTGATGATGTTCGGATTGTACAGTCATTTAGTCCTACGAATGATATTGAACCAACTCCAATTTATCTATCCCAATTTGCTATGGACAGGACCTCATCATTGTGTACATATGCCTACCTTTCAGCAATTTCAAAGTCTGGAGGGGGTCAGCTGGATTTGCTCATATTGGATTGCCTTAGTAGGACTGGTTCTCATAATGTCCATCTTTGTTGGGATCAGACACTGGATGCTGTTAAGAGGATTTGTCCCAAAAGGGCATTGCTCATTGGGATGACTGATGAAATGGACCATCACAAGGACAATGAAACGTTGGAAGAGTGGTCCAGAAGGTAG
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| Protein seq | MASSVPNGHGAATATGEGGTPPPPPPPSSSSLVFLGTGCSSAVPNARCLIQPPDPPCAVCSQFLSVLPELNPNYRIWALVSTWLLAATVQQMVAVIILTHEHADAVLGLDDVRIVQSFSPTNDIEPTPIYLSQFAMDRTSSLCTYAYLSAISKSGGGQLDLLILDCLSRTGSHNVHLCWDQTLDAVKRICPKRALLIGMTDEMDHHKDNETLEEWSRR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0350300 | OsMH63_12T0350300-mRNA-1 | Chr12 | 24827193 | 24831608 | - | maker | ||
| CDS seq | ATGGCCTCCTCCGTCCCCAACGGACACGGCGCCGCCACCGCCACCGGCGAAGGAGGGACGCCACCGCCGCCGCCGCCGCCCTCCTCATCCTCGCTGGTGTTCCTCGGGACGGGCTGCTCCAGCGCCGTGCCCAACGCTCGGTGCCTGATCCAGCCCCCCGACCCGCCCTGCGCCGTCTGCTCCCAGTTCCTCTCCGTGCTCCCCGAGCTAAACCCTAACTACAGAATATGGGCGCTGGTTTCTACTTGGCTGCTTGCTGCAACTGTGCAGCAGATGGTAGCAGTAATTATTCTGACTCATGAGCATGCTGATGCAGTCTTGGGTCTTGATGATGTTCGGATTGTACAGTCATTTAGTCCTACGAATGATATTGAACCAACTCCAATTTATCTATCCCAATTTGCTATGGACAGGACCTCATCATTGTGTACATATGCCTACCTTTCAGCAATTTCAAAGTCTGGAGGGGGTCAGCTGGATTTGCTCATATTGGATTGCCTTAGTAGGACTGGTTCTCATAATGTCCATCTTTGTTGGGATCAGACACTGGATGCTGTTAAGAGGATTTGTCCCAAAAGGGCATTGCTCATTGGGATGACTGATGAAATGGACCATCACAAGGACAATGAAACGTTGGAAGAGTGGTCCAGAAGGTAG
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| Protein seq | MASSVPNGHGAATATGEGGTPPPPPPPSSSSLVFLGTGCSSAVPNARCLIQPPDPPCAVCSQFLSVLPELNPNYRIWALVSTWLLAATVQQMVAVIILTHEHADAVLGLDDVRIVQSFSPTNDIEPTPIYLSQFAMDRTSSLCTYAYLSAISKSGGGQLDLLILDCLSRTGSHNVHLCWDQTLDAVKRICPKRALLIGMTDEMDHHKDNETLEEWSRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.453784 | 2.127107 | 3.7555015 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0615500 | RBH | 1.281323 | 1.754644 | 1.955091 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g42100 | RBH | 0.778834 | 0.688420 | 0.586673 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0615500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020820 | RBH | 0.071289 | 28.807552 | 14.959208 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0020920 | RBH | 0.365375 | 5.426314 | 4.134045 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0021260 | RBH | 0.425503 | 3.691974 | 8.709604 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020580 | RBH | 0.104016 | 0.457587 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0020190 | SBH | 54.849434 | 22.401571 | 53.145145 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0432300 | SBH | 0.2319095 | 0.805307 | 0.1497165 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0020070 | RBH | 2.096323 | 1.304637 | 3.954368 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0380200 | RBH | 3.829146 | 10.008831 | 17.4958305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0020320 | RBH | 0.023671 | 0.129344 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0020540 | RBH | 6.818887 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0020480 | RBH | 57.181091 | 29.644806 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0020530 | RBH | 6.721580 | 0.0 | 6.884636 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0020730 | RBH | 0.041415 | 0.858669 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G020230 | RBH | 1.253018 | 6.812006 | 3.037562 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0020020 | RBH | 2.015735 | 27.757591 | 18.310310 |
