Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_12G0324500 | OGI:12063230 | 1/16 | Minghui 63 | MH63RS3 | HZAU | Chr12:22966090-22967475 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAGTACCAGCTTTCAGTGTTCTCACTCTCTACAAATGCAAAAGCCATAGGTACAACCTGGTTGTTCCCATCACACCCAATTGCTGTCAATATCTGACCTCGGTATTTACCTGTCATAAAAGTTCCATCTATGCATAGAACAGGTCGACAATGCACAAAAGCATTGATGCAAGCACCCAATGAGAAAAAGGCTCTTTGCAGCACACTCTTTGTTCGATCATCAACCAATGTAAATGTATGTAGGTCATAGTAAGTATTATTATTCCTCTGGGCAATGGTGGCTAACAAACGAGGCAAATTATCATAAGAAGCTTCAAATGTGCCATACCTCATCTCAATAATCTTTTGTTTGGCTCTCCAGGCCTTTGCATAGCTTATGGTGTACTTGAATTTGTTCTCGATGTGCCTAATAATTGATTTTGGTTCAAAGCCAATGTTACCAACAACACTGCTGTACATCTCACTTGCCACAAAAGCTGAAGTGATGTTTCGGTGATACTTCTCCACCCCTTGTAAGTAGCACTTGTGCTCGGTCATAATGCTAACTTTCCAATAATCATTCCATTTACCCTTATATGCATGGACACGCCACGGACAATCTTCCTTCATGCACCTCACTTCATACACATAATTTGTTGACTTGACCACCCTAAACTCTCTCTGCAAGGAAACTGCCCAATGCTTCACCGCCTCCTTCATCTCATCCTTATGAGCATACCTTGCACCGTCAATTACCTCGTTCTCCTTATACTCCCAGGGTACATGATCACCCTCTGATATAACAAGTCCAGAGAAGTCCTCATTTGCCCAATCAGTAGCCATTACATCACCTTCCTCATCGGATGATGCGTCGTCGTCCGCTTCCTCATTATCCGAATCTTCCCTCTCCATTTCATCAACAATTATACCGACTCTCTCCCCCTCATCCGCCATGCCCATGGCCTGCTCCTCCCTTGGTTGATTTTCCTCATTTTGCATCGATGGTCCAACAACATCCCCTGCATTGATAGGACCCTCTACATCTTCGGTTTGCATTGAAACATTTATATCTTTCTCTTGTACCGACACAAATATAACGAGGGGCCATGACCGTTCAAAAGCCATTTCCACATACCGTCTCCAAGCAGCAGTGCTGTCCATCGGCATTAGTTCCCAAAAATAACCTTCTGTTGCACGACTCACTACAACTGATACTGACATTGTGTAGACTTCTTGGTCTATTCTAAATCCTCTCAACAACCAACTATAAATTGACTGAAATGTTCTCTCCGCAGGCCTATCGATGCCCTTAGATGTCATTACAAAATCTGACAGATCAACACCATCTGGACCAAATCTAATATTTCCTTCACCGTGAACTATCTGAAATGTGACCTTATTTGACAT
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| CDS seq | ATGTCAAATAAGGTCACATTTCAGATAGTTCACGGTGAAGGAAATATTAGATTTGGTCCAGATGGTGTTGATCTGTCAGATTTTGTAATGACATCTAAGGGCATCGATAGGCCTGCGGAGAGAACATTTCAGTCAATTTATAGTTGGTTGTTGAGAGGATTTAGAATAGACCAAGAAGTCTACACAATGTCAGTATCAGTTGTAGTGAGTCGTGCAACAGAAGGTTATTTTTGGGAACTAATGCCGATGGACAGCACTGCTGCTTGGAGACGGTATGTGGAAATGGCTTTTGAACGGTCATGGCCCCTCGTTATATTTGTGTCGGTACAAGAGAAAGATATAAATGTTTCAATGCAAACCGAAGATGTAGAGGGTCCTATCAATGCAGGGGATGTTGTTGGACCATCGATGCAAAATGAGGAAAATCAACCAAGGGAGGAGCAGGCCATGGGCATGGCGGATGAGGGGGAGAGAGTCGGTATAATTGTTGATGAAATGGAGAGGGAAGATTCGGATAATGAGGAAGCGGACGACGACGCATCATCCGATGAGGAAGGTGATGTAATGGCTACTGATTGGGCAAATGAGGACTTCTCTGGACTTGTTATATCAGAGGGTGATCATGTACCCTGGGAGTATAAGGAGAACGAGGTAATTGACGGTGCAAGGTATGCTCATAAGGATGAGATGAAGGAGGCGGTGAAGCATTGGGCAGTTTCCTTGCAGAGAGAGTTTAGGGTGGTCAAGTCAACAAATTATGTGTATGAAGTGAGGTGCATGAAGGAAGATTGTCCGTGGCGTGTCCATGCATATAAGGGTAAATGGAATGATTATTGGAAAGTTAGCATTATGACCGAGCACAAGTGCTACTTACAAGGGGTGGAGAAGTATCACCGAAACATCACTTCAGCTTTTGTGGCAAGTGAGATGTACAGCAGTGTTGTTGGTAACATTGGCTTTGAACCAAAATCAATTATTAGGCACATCGAGAACAAATTCAAGTACACCATAAGCTATGCAAAGGCCTGGAGAGCCAAACAAAAGATTATTGAGATGAGGTATGGCACATTTGAAGCTTCTTATGATAATTTGCCTCGTTTGTTAGCCACCATTGCCCAGAGGAATAATAATACTTACTATGACCTACATACATTTACATTGGTTGATGATCGAACAAAGAGTGTGCTGCAAAGAGCCTTTTTCTCATTGGGTGCTTGCATCAATGCTTTTGTGCATTGTCGACCTGTTCTATGCATAGATGGAACTTTTATGACAGGTAAATACCGAGGTCAGATATTGACAGCAATTGGGTGTGATGGGAACAACCAGGTTGTACCTATGGCTTTTGCATTTGTAGAGAGTGAGAACACTGAAAGCTGGTACTGA
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| Protein seq | MSNKVTFQIVHGEGNIRFGPDGVDLSDFVMTSKGIDRPAERTFQSIYSWLLRGFRIDQEVYTMSVSVVVSRATEGYFWELMPMDSTAAWRRYVEMAFERSWPLVIFVSVQEKDINVSMQTEDVEGPINAGDVVGPSMQNEENQPREEQAMGMADEGERVGIIVDEMEREDSDNEEADDDASSDEEGDVMATDWANEDFSGLVISEGDHVPWEYKENEVIDGARYAHKDEMKEAVKHWAVSLQREFRVVKSTNYVYEVRCMKEDCPWRVHAYKGKWNDYWKVSIMTEHKCYLQGVEKYHRNITSAFVASEMYSSVVGNIGFEPKSIIRHIENKFKYTISYAKAWRAKQKIIEMRYGTFEASYDNLPRLLATIAQRNNNTYYDLHTFTLVDDRTKSVLQRAFFSLGACINAFVHCRPVLCIDGTFMTGKYRGQILTAIGCDGNNQVVPMAFAFVESENTESWY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0324500 | OsMH63_12T0324500.1 | Chr12 | 22966090 | 22967475 | - | maker | ||
| CDS seq | ATGTCAAATAAGGTCACATTTCAGATAGTTCACGGTGAAGGAAATATTAGATTTGGTCCAGATGGTGTTGATCTGTCAGATTTTGTAATGACATCTAAGGGCATCGATAGGCCTGCGGAGAGAACATTTCAGTCAATTTATAGTTGGTTGTTGAGAGGATTTAGAATAGACCAAGAAGTCTACACAATGTCAGTATCAGTTGTAGTGAGTCGTGCAACAGAAGGTTATTTTTGGGAACTAATGCCGATGGACAGCACTGCTGCTTGGAGACGGTATGTGGAAATGGCTTTTGAACGGTCATGGCCCCTCGTTATATTTGTGTCGGTACAAGAGAAAGATATAAATGTTTCAATGCAAACCGAAGATGTAGAGGGTCCTATCAATGCAGGGGATGTTGTTGGACCATCGATGCAAAATGAGGAAAATCAACCAAGGGAGGAGCAGGCCATGGGCATGGCGGATGAGGGGGAGAGAGTCGGTATAATTGTTGATGAAATGGAGAGGGAAGATTCGGATAATGAGGAAGCGGACGACGACGCATCATCCGATGAGGAAGGTGATGTAATGGCTACTGATTGGGCAAATGAGGACTTCTCTGGACTTGTTATATCAGAGGGTGATCATGTACCCTGGGAGTATAAGGAGAACGAGGTAATTGACGGTGCAAGGTATGCTCATAAGGATGAGATGAAGGAGGCGGTGAAGCATTGGGCAGTTTCCTTGCAGAGAGAGTTTAGGGTGGTCAAGTCAACAAATTATGTGTATGAAGTGAGGTGCATGAAGGAAGATTGTCCGTGGCGTGTCCATGCATATAAGGGTAAATGGAATGATTATTGGAAAGTTAGCATTATGACCGAGCACAAGTGCTACTTACAAGGGGTGGAGAAGTATCACCGAAACATCACTTCAGCTTTTGTGGCAAGTGAGATGTACAGCAGTGTTGTTGGTAACATTGGCTTTGAACCAAAATCAATTATTAGGCACATCGAGAACAAATTCAAGTACACCATAAGCTATGCAAAGGCCTGGAGAGCCAAACAAAAGATTATTGAGATGAGGTATGGCACATTTGAAGCTTCTTATGATAATTTGCCTCGTTTGTTAGCCACCATTGCCCAGAGGAATAATAATACTTACTATGACCTACATACATTTACATTGGTTGATGATCGAACAAAGAGTGTGCTGCAAAGAGCCTTTTTCTCATTGGGTGCTTGCATCAATGCTTTTGTGCATTGTCGACCTGTTCTATGCATAGATGGAACTTTTATGACAGGTAAATACCGAGGTCAGATATTGACAGCAATTGGGTGTGATGGGAACAACCAGGTTGTACCTATGGCTTTTGCATTTGTAGAGAGTGAGAACACTGAAAGCTGGTACTGA
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| Protein seq | MSNKVTFQIVHGEGNIRFGPDGVDLSDFVMTSKGIDRPAERTFQSIYSWLLRGFRIDQEVYTMSVSVVVSRATEGYFWELMPMDSTAAWRRYVEMAFERSWPLVIFVSVQEKDINVSMQTEDVEGPINAGDVVGPSMQNEENQPREEQAMGMADEGERVGIIVDEMEREDSDNEEADDDASSDEEGDVMATDWANEDFSGLVISEGDHVPWEYKENEVIDGARYAHKDEMKEAVKHWAVSLQREFRVVKSTNYVYEVRCMKEDCPWRVHAYKGKWNDYWKVSIMTEHKCYLQGVEKYHRNITSAFVASEMYSSVVGNIGFEPKSIIRHIENKFKYTISYAKAWRAKQKIIEMRYGTFEASYDNLPRLLATIAQRNNNTYYDLHTFTLVDDRTKSVLQRAFFSLGACINAFVHCRPVLCIDGTFMTGKYRGQILTAIGCDGNNQVVPMAFAFVESENTESWY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0273515 | 0.032004 | 0.0002875 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0597300 | SBH | 3.570620 | 2.109113 | 5.829481 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g42270 | SBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0597300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0019570 | SBH | 1.019104 | 6.867098 | 3.827148 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0019690 | SBH | 0.639971 | 3.470165 | 3.527150 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0020010 | SBH | 1.800722 | 7.177560 | 7.285092 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0019330 | SBH | 0.296997 | 0.226306 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0018940 | SBH | 10.268041 | 7.694790 | 13.049567 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0276600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018810 | SBH | 0.656915 | 1.227103 | 0.749630 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0328400 | SBH | 0.010804 | 0.00208 | 0.024358 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0019060 | SBH | 0.365852 | 0.359422 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0019290 | SBH | 1.417163 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0019200 | SBH | 9.466825 | 12.093225 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0019240 | SBH | 0.599863 | 0.0 | 1.908276 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0019420 | SBH | 1.387539 | 13.550007 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G019060 | SBH | 0.602203 | 5.266673 | 3.392193 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0018740 | SBH | 4.780860 | 33.631927 | 13.465932 |
