Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_12G0322000 | OGI:12062870 | 15/16 | Minghui 63 | MH63RS3 | HZAU | Chr12:22762296-22763438 | ||||||||
| Gene Symbol | ERF4, OsERF#004, OsERF004, OsERF4, AP2/EREBP#159, AP2/EREBP159 | ||||||||||
| DNA seq | ATGCCTCCATCCATGGCGACGGCGAGGGTGGCGTCACCGTCCACGGACAGGAAGCGCAAGGCCAGCAGCGAGGACGACATAGACGCCGCCGCCGCCGCCGCCGCTCTCACCTCGCCGCTGGCGCCGGCGAGGGGGAGGAAGCGGTTCGTCGGCGTGCGGCAGCGGCCGTCGGGGAGGTGGGTGGCGGAGATCAAGGACACCATCCAGAAGATCCGCGTGTGGCTCGGCACCTTCGACACCGCCGAGGAGGCCGCCCGCGCCTACGACGAGGCCGCCTGCCTCCTCCGCGGCGCCAACACCCGCACCAACTTTTGGCCCCGCCCCTCGCCGCCGCCCGCCGCCGTCGCGCCACCGGAGACGACGACGACGCCGGCGCTGCCGTCCAAGGTCACCAACTTGCTACTGCTCCGCCTCAAGGCTCGCAACCAGCAGGTCGTCGACGCCGGCGCCGCGGCGCCGCAAGAAGCCGCTCTGTTGCAGCTGCAGCAGCAGACGCCGGCGTCGTGCCAGGAGGTGTTCGTCCGTAGCCACGGCGAGGAGTACGGCTTCCACGTCGACGACTTCCTCAGCGACGCGTGCAGCAACGAGCAGTACTCCGGCGACAGCTCGCTGGGATTGGACGACGACGACGGCGAGGTGGAAGACGAGGAGGAGGAGGAGCTCGACTTCCAGTTCATGGACGTCGCGCCCGGGGCGTCGTCGGCGGCGGCGGAGGCGGGGCTAGGCGGCGAGGGCGCGCTGTGCTCGCCGTTCGAGATGGTCGCCGCGGAGCTCGGCGGCGCGGTGGACGTGGCCGCGCACGACGCGATGAGGCAGATGGACTACGAGAGGAAGATCTCCGCGTCGCTCTACGCGCTCACCGGCGTCTCCGAGTGCCTCCGGATCCGCGCCGCCGCCGGCGCCACCGCCGCTGCGCGGGACCACCTCACCGGCCTGAGAGAGGCTTGCCGGAAGAAGCAGAAATTCGCCGCCGCCGCGGCGGCGCCGCCACAGCAGCAAGAACCATCTCCTCCTCCACAGCAGCCTGAGACGCCGGCGAGCTCAGGCGGCGGCATGTCGGAGACGGCGAGCGGCGGCGGCGGCGACGGCGACGTGCTGATGTGGAGCTCACTGGACTTGGCTCCGATTTGCCACATGGCATAG
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| CDS seq | ATGCCTCCATCCATGGCGACGGCGAGGGTGGCGTCACCGTCCACGGACAGGAAGCGCAAGGCCAGCAGCGAGGACGACATAGACGCCGCCGCCGCCGCCGCCGCTCTCACCTCGCCGCTGGCGCCGGCGAGGGGGAGGAAGCGGTTCGTCGGCGTGCGGCAGCGGCCGTCGGGGAGGTGGGTGGCGGAGATCAAGGACACCATCCAGAAGATCCGCGTGTGGCTCGGCACCTTCGACACCGCCGAGGAGGCCGCCCGCGCCTACGACGAGGCCGCCTGCCTCCTCCGCGGCGCCAACACCCGCACCAACTTTTGGCCCCGCCCCTCGCCGCCGCCCGCCGCCGTCGCGCCACCGGAGACGACGACGACGCCGGCGCTGCCGTCCAAGGTCACCAACTTGCTACTGCTCCGCCTCAAGGCTCGCAACCAGCAGGTCGTCGACGCCGGCGCCGCGGCGCCGCAAGAAGCCGCTCTGTTGCAGCTGCAGCAGCAGACGCCGGCGTCGTGCCAGGAGGTGTTCGTCCGTAGCCACGGCGAGGAGTACGGCTTCCACGTCGACGACTTCCTCAGCGACGCGTGCAGCAACGAGCAGTACTCCGGCGACAGCTCGCTGGGATTGGACGACGACGACGGCGAGGTGGAAGACGAGGAGGAGGAGGAGCTCGACTTCCAGTTCATGGACGTCGCGCCCGGGGCGTCGTCGGCGGCGGCGGAGGCGGGGCTAGGCGGCGAGGGCGCGCTGTGCTCGCCGTTCGAGATGGTCGCCGCGGAGCTCGGCGGCGCGGTGGACGTGGCCGCGCACGACGCGATGAGGCAGATGGACTACGAGAGGAAGATCTCCGCGTCGCTCTACGCGCTCACCGGCGTCTCCGAGTGCCTCCGGATCCGCGCCGCCGCCGGCGCCACCGCCGCTGCGCGGGACCACCTCACCGGCCTGAGAGAGGCTTGCCGGAAGAAGCAGAAATTCGCCGCCGCCGCGGCGGCGCCGCCACAGCAGCAAGAACCATCTCCTCCTCCACAGCAGCCTGAGACGCCGGCGAGCTCAGGCGGCGGCATGTCGGAGACGGCGAGCGGCGGCGGCGGCGACGGCGACGTGCTGATGTGGAGCTCACTGGACTTGGCTCCGATTTGCCACATGGCATAG
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| Protein seq | MPPSMATARVASPSTDRKRKASSEDDIDAAAAAAALTSPLAPARGRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPRPSPPPAAVAPPETTTTPALPSKVTNLLLLRLKARNQQVVDAGAAAPQEAALLQLQQQTPASCQEVFVRSHGEEYGFHVDDFLSDACSNEQYSGDSSLGLDDDDGEVEDEEEEELDFQFMDVAPGASSAAAEAGLGGEGALCSPFEMVAAELGGAVDVAAHDAMRQMDYERKISASLYALTGVSECLRIRAAAGATAAARDHLTGLREACRKKQKFAAAAAAPPQQQEPSPPPQQPETPASSGGGMSETASGGGGDGDVLMWSSLDLAPICHMA |
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| Function | Ethylene-responsive transcription factor ERN1 [UniProtKB/Swiss-Prot:A2Q5W1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0322000 | OsMH63_12T0322000.1 | Chr12 | 22762296 | 22763438 | + | maker | ||
| CDS seq | ATGCCTCCATCCATGGCGACGGCGAGGGTGGCGTCACCGTCCACGGACAGGAAGCGCAAGGCCAGCAGCGAGGACGACATAGACGCCGCCGCCGCCGCCGCCGCTCTCACCTCGCCGCTGGCGCCGGCGAGGGGGAGGAAGCGGTTCGTCGGCGTGCGGCAGCGGCCGTCGGGGAGGTGGGTGGCGGAGATCAAGGACACCATCCAGAAGATCCGCGTGTGGCTCGGCACCTTCGACACCGCCGAGGAGGCCGCCCGCGCCTACGACGAGGCCGCCTGCCTCCTCCGCGGCGCCAACACCCGCACCAACTTTTGGCCCCGCCCCTCGCCGCCGCCCGCCGCCGTCGCGCCACCGGAGACGACGACGACGCCGGCGCTGCCGTCCAAGGTCACCAACTTGCTACTGCTCCGCCTCAAGGCTCGCAACCAGCAGGTCGTCGACGCCGGCGCCGCGGCGCCGCAAGAAGCCGCTCTGTTGCAGCTGCAGCAGCAGACGCCGGCGTCGTGCCAGGAGGTGTTCGTCCGTAGCCACGGCGAGGAGTACGGCTTCCACGTCGACGACTTCCTCAGCGACGCGTGCAGCAACGAGCAGTACTCCGGCGACAGCTCGCTGGGATTGGACGACGACGACGGCGAGGTGGAAGACGAGGAGGAGGAGGAGCTCGACTTCCAGTTCATGGACGTCGCGCCCGGGGCGTCGTCGGCGGCGGCGGAGGCGGGGCTAGGCGGCGAGGGCGCGCTGTGCTCGCCGTTCGAGATGGTCGCCGCGGAGCTCGGCGGCGCGGTGGACGTGGCCGCGCACGACGCGATGAGGCAGATGGACTACGAGAGGAAGATCTCCGCGTCGCTCTACGCGCTCACCGGCGTCTCCGAGTGCCTCCGGATCCGCGCCGCCGCCGGCGCCACCGCCGCTGCGCGGGACCACCTCACCGGCCTGAGAGAGGCTTGCCGGAAGAAGCAGAAATTCGCCGCCGCCGCGGCGGCGCCGCCACAGCAGCAAGAACCATCTCCTCCTCCACAGCAGCCTGAGACGCCGGCGAGCTCAGGCGGCGGCATGTCGGAGACGGCGAGCGGCGGCGGCGGCGACGGCGACGTGCTGATGTGGAGCTCACTGGACTTGGCTCCGATTTGCCACATGGCATAG
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| Protein seq | MPPSMATARVASPSTDRKRKASSEDDIDAAAAAAALTSPLAPARGRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPRPSPPPAAVAPPETTTTPALPSKVTNLLLLRLKARNQQVVDAGAAAPQEAALLQLQQQTPASCQEVFVRSHGEEYGFHVDDFLSDACSNEQYSGDSSLGLDDDDGEVEDEEEEELDFQFMDVAPGASSAAAEAGLGGEGALCSPFEMVAAELGGAVDVAAHDAMRQMDYERKISASLYALTGVSECLRIRAAAGATAAARDHLTGLREACRKKQKFAAAAAAPPQQQEPSPPPQQPETPASSGGGMSETASGGGGDGDVLMWSSLDLAPICHMA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0314645 | 3.611969 | 0.117178 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0582900 | RBH | 0.0 | 0.0 | 0.209080 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g39330 | RBH | 0.0 | 0.0 | 0.053298 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0582900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0018730 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0018840 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0019190 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0018520 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0018110 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018000 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0351400 | RBH | 0.1163845 | 1.4363935 | 0.3366405 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0018200 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0018450 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0018360 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0019480 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0018570 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G018310 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0018020 | RBH | 0.0 | 0.0 | 0.0 |
