Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_12G0280400 | OGI:12055810 | 7/16 | Minghui 63 | MH63RS3 | HZAU | Chr12:19705045-19707310 | ||||||||
| Gene Symbol | UBP4-3, OsUBP4-3, UBP4-8, OsUBP4-8, OsUBP8, UBP8 | ||||||||||
| DNA seq | ATGGAGAATATAGGCAACCGGTAAGGTTAGGAGAAGAATTTTTTTAGAAAAATATGTTTCAGATTATAAGTTATTTTGAACTTTTTCCTAGTCAAACCTTTTAGATTGATCTTTTTTTTTAAAAAATAGCAACATATATAACATCAAATTAGTTTTATTAAATATAGAGTAACATTGAATATATTTTGATAATATGTTTGTTTTGTGTTAAAATTATTTTTATATTTTTTATAAATGTAATTGATAAAAAAATTGATTAGGAAAAAAGTTAAGTAACTTATAATATAAAACGGGGAAGTATATTGTTTAAAAGCTGAAGAAGCATGTCGGTGATAATCCAAGCCAAAAGTATTAAGCCTCTTAACAAGAGATTACTACTATCCGTCGGTGGCCTCTAGTCTCCACTGTCAGAGGCTTTGACCAAAAGTGTTGACAAGATGTTGTTGCCACCGTAGCTCACTTGCTCAGAACTGATAGGGAGCACCTTTTATAGAAGAGTAACGCTCCGGTGCATTCTACTTGGAGCATTCTATTGCAAGTAGAATTAATCTTGACCGTTTATTTTAAAAGGTAGATTAGTAATTTCTTAATACAGCTCAGGGTTAATTTTGGCATGGGATTATTTCTTTTTCTCATCTTTTCGCCTTAGGTCCGACAAAAGGCATATCGCCCGCGCCCCCGACGCAGGCACCGCTTCAGTCATAGCAGGCGGCGACGCGGCGAAAATCGCCGTCGGCTCTAGATCCGGATCACCGGCGGACCTCCTCCTCCGGCCCACACCTCCGCCGCCGCTCCGCCCGCCCATCTACTCCACCGGCGGCTTGCCGACCCGACCCCCCCTCCCCCAAAGCCCCTAACGCAGGCACCGCATCAGTCATCGCAGGTGGCGGCGCGGCGAAAATTGCCATCGGCGCTGCCAGCGTCAGGTCCGACGCAAAAGCTCCCGACTCGCAGGCACCGCATCATCGCATCTGGTTGTTGTATTCTCTGATTTAGCCTTAACCTTGTGCTATGGTGCTGTGTGTATGCATGGTTAAATTCTTCTCGATAAGCCTGAAGTATGTAGTGTTCCTTTTGGATATTATGGCTTCACTGCTTATTGAATAGCCTTCTTTGCAATCTTCATTTCTTTTGTTAACCAAAATAGGGTGATGTGCGTATGTATGATGTGGAAATATTACCTCAATACGTGGCTTGCTTTGGATTCTGAATTTACTGTTGTTGCATAACTGATAACCACTTTTTTCTCTGCTTTGCATTCAGGTACTGCCCATGCTGCAAAAAGCATCAACAAGCGATGAAGAAATTAGATCTGTGGAGGCTACCGGAAGTTCTGGTCATTCATCTCAAAAGGTTCTCGTACACCCAATTCACAAGAAATAAGCTTGAGACTATCTTTTTCAATGTCTTGATAACGAGCAAGGCTGGTTGGTTTCTACAGCATGAAGAAGGGAAGGGATGGTAAGTTTGATGATGAGTGCGTGAGACCTATAACTGAAGACAGTATAAAGACACCTGCTGCTTATGTGCTGTTCTACACACGAGAATGATCAAGATACAGCTGCAATACATCAAATATTTTTTCGGGATGTTTTGCCAAGTCTAGATCTCAAGTCAATAACCTATACAACAGCATGTACAGATTCAATTGCCGACAAGAGAACAAAAGACCTAGCTAATGAACTATTCTTTTCCAGATTCTTTTTGTACATGGCTTGGGGGTCCTACAATGTAATAGCCTGCTAGTGATTAGCCTTGGTTCTACAAAATTCTTTTTGTCAACGAATTGTTGCGAATAATTTTAAAACGATGTAACCTCTCCTTTTAAATTAACTCGTATGATCGATCTGTTCCTGTCGCGAGTGCGACGCCATAGCTACTCCTGTGTTGCTCCATCCATGAATGGCTATTTGCCAATTCCTGAGTCAGATGGCACTGACATGATGATCATTGAAGGTCTGAAATCCCCATTCTGTAGCTTTGCTTTATGGACCAGGAAAATATATCCATGATGATTTCTGATTCCGTCCTATCTCCAGAACTCTGCTGTTTGACAAATAACAGAAGATTATTGCTGCCCTCAGTTCTGTTTGGCCTGATTGCCTTGGACAAATATTCTGACATATCTCAAGAACATCTTTTCTGCCTACACATATCACAGGACCAGACCAGGTTGGATGGGCATCAGAGCTTTATGTGCAACAGTATGTTGATTGCAATTGTTATAAATAAGAACAATAAAAAAATAAGTCTAACTACTCATTAA
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| CDS seq | ATGGAGAATATAGGCAACCGGTCCGACAAAAGGCATATCGCCCGCGCCCCCGACGCAGGCACCGCTTCAGCGGCGACGCGGCGAAAATCGCCGTCGGCTCTAGATCCGGATCACCGGCGGACCTCCTCCTCCGGCCCACACCTCCGCCGCCGCTCCGCCCGCCCATCTACTCCACCGGCGGCTTGCCGACCCGACCCCCCCTCCCCCAAAGCCCCTAACGCAGGCACCGCATCAGTCATCGCAGGTGGCGGCGCGGCGAAAATTGCCATCGGCGCTGCCAGCGTCAGGTCCGACGCAAAAGCTCCCGACTCGCAGGCACCGCATCATCGCATCTGGTTGTTGTACTGCCCATGCTGCAAAAAGCATCAACAAGCGATGAAGAAATTAGATCTGTGGAGGCTACCGGAAGTTCTGGTCATTCATCTCAAAAGGTTCTCGTACACCCAATTCACAAGAAATAAGCTTGAGACTATCTTTTTCAATGTCTTGATAACGAGCAAGGCTGGTTGGTTTCTACAGCATGAAGAAGGGAAGGGATGCTACTCCTGTGTTGCTCCATCCATGAATGGCTATTTGCCAATTCCTGAGTCAGATGGCACTGACATGATGATCATTGAAGAACTCTGCTGTTTGACAAATAACAGAAGATTATTGCTGCCCTCAGTTCTGTTTGGCCTGATTGCCTTGGACAAATATTCTGACATATCTCAAGAACATCTTTTCTGCCTACACATATCACAGGACCAGACCAGGTTGGATGGGCATCAGAGCTTTATGTGCAACAGTATGTTGATTGCAATTGTTATAAATAAGAACAATAAAAAAATAAGTCTAACTACTCATTAA
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| Protein seq | MENIGNRSDKRHIARAPDAGTASAATRRKSPSALDPDHRRTSSSGPHLRRRSARPSTPPAACRPDPPSPKAPNAGTASVIAGGGAAKIAIGAASVRSDAKAPDSQAPHHRIWLLYCPCCKKHQQAMKKLDLWRLPEVLVIHLKRFSYTQFTRNKLETIFFNVLITSKAGWFLQHEEGKGCYSCVAPSMNGYLPIPESDGTDMMIIEELCCLTNNRRLLLPSVLFGLIALDKYSDISQEHLFCLHISQDQTRLDGHQSFMCNSMLIAIVINKNNKKISLTTH |
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| Function | Ubiquitin carboxyl-terminal hydrolase 8 [UniProtKB/Swiss-Prot:Q9C585] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0280400 | OsMH63_12T0280400-mRNA-1 | Chr12 | 19705045 | 19707310 | + | maker | ||
| CDS seq | ATGGAGAATATAGGCAACCGGTCCGACAAAAGGCATATCGCCCGCGCCCCCGACGCAGGCACCGCTTCAGCGGCGACGCGGCGAAAATCGCCGTCGGCTCTAGATCCGGATCACCGGCGGACCTCCTCCTCCGGCCCACACCTCCGCCGCCGCTCCGCCCGCCCATCTACTCCACCGGCGGCTTGCCGACCCGACCCCCCCTCCCCCAAAGCCCCTAACGCAGGCACCGCATCAGTCATCGCAGGTGGCGGCGCGGCGAAAATTGCCATCGGCGCTGCCAGCGTCAGGTCCGACGCAAAAGCTCCCGACTCGCAGGCACCGCATCATCGCATCTGGTTGTTGTACTGCCCATGCTGCAAAAAGCATCAACAAGCGATGAAGAAATTAGATCTGTGGAGGCTACCGGAAGTTCTGGTCATTCATCTCAAAAGGTTCTCGTACACCCAATTCACAAGAAATAAGCTTGAGACTATCTTTTTCAATGTCTTGATAACGAGCAAGGCTGGTTGGTTTCTACAGCATGAAGAAGGGAAGGGATGCTACTCCTGTGTTGCTCCATCCATGAATGGCTATTTGCCAATTCCTGAGTCAGATGGCACTGACATGATGATCATTGAAGAACTCTGCTGTTTGACAAATAACAGAAGATTATTGCTGCCCTCAGTTCTGTTTGGCCTGATTGCCTTGGACAAATATTCTGACATATCTCAAGAACATCTTTTCTGCCTACACATATCACAGGACCAGACCAGGTTGGATGGGCATCAGAGCTTTATGTGCAACAGTATGTTGATTGCAATTGTTATAAATAAGAACAATAAAAAAATAAGTCTAACTACTCATTAA
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| Protein seq | MENIGNRSDKRHIARAPDAGTASAATRRKSPSALDPDHRRTSSSGPHLRRRSARPSTPPAACRPDPPSPKAPNAGTASVIAGGGAAKIAIGAASVRSDAKAPDSQAPHHRIWLLYCPCCKKHQQAMKKLDLWRLPEVLVIHLKRFSYTQFTRNKLETIFFNVLITSKAGWFLQHEEGKGCYSCVAPSMNGYLPIPESDGTDMMIIEELCCLTNNRRLLLPSVLFGLIALDKYSDISQEHLFCLHISQDQTRLDGHQSFMCNSMLIAIVINKNNKKISLTTH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0.001194 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g42600 | SBH | 0.753221 | 0.224479 | 0.736609 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0021220 | SBH | 0.383288 | 9.151832 | 3.776976 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0021300 | SBH | 0.205411 | 4.324055 | 2.382106 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0021660 | SBH | 0.312104 | 5.983986 | 9.036878 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020970 | SBH | 0.137134 | 0.263090 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0020620 | SBH | 5.455890 | 11.708888 | 14.837638 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0015460 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0312500 | RBH | 0.0539285 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0020890 | SBH | 1.218498 | 13.801731 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0020970 | SBH | 0.762163 | 0.0 | 1.667933 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G028470 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
