Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_12G0035600 | OGI:12005410 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr12:2052461-2054126 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGTGTTCTTCTACTCCAACGCCACCGCCTTCATCGCGTCGCTGGTCATCCTCATCCTCCTCTTGAGCAACATGATCAGCACGCAGGGGATCAAGTACTGTGCGCTGCAGGTCGCCATGATTCTGAACTTGTTTGGCCTGATCGGAGCTTACGCCGCTGGGAGCTGCAGGCAGGCGTCCAAATCCGTGTACGTCTCGGTTCTTGTTTTGCCGGTGTTTCTCTATGTTGGTATCCATGTCTTGGTGTTCATGCTCGAAGTGTCTCCGACATGGGCGACATGGCGAGTAGAAGTGAGGGAGAAGCTGAAGCAATGTATGCCTGAATGGCTCAAGAATCTGCTTGAGTTGGAGAAGCATGTCGAGGAGGAAGAGGAAGAGTGGAAGCTGGAGAAGAGGCGAAAGCTCCTACTCCTCGTTGCGATTCTTGCAGCAAGCCTCACCTACGAAGCAGGCATGAACCCACCGGGTGGTTTCTGGCAGGAGAAGAAGTCCGGCGATGTCGGTGACCCGGTGCTCAACAACGACAACTACCGGCACCGCTACCTGGCGTTCTTCTTCTGCAACACCACGGCGTTCGTCGCGTCCTTGGCCATCATCATGCTGCTGGTGAACCGGAAGCTCTCGGCGAGAGGAATCCGGTCGTACGCGCTGCGGGTGTGCGTGATCCTTGTCCTCGTCGGGCTCATGGGGGCCTTCGCCGCCGGCAGCTGCAGGAAGGTGAAGACGTCCATCTATGTCTTCGTCTTGGTCCTCGCCGTTCTGCTCTGCATCGCGTTCCAGGTCGCACTGGTCGTGTCGGGGTCGCTGCGACGTCTCGTCAACAGCCTCCTCTCCAAGCTAGGGGCGCCGCTTGAGGAGGACGCCGGTCGTACACGGCCGCCGACGGCGGCGACGGCGAGCCTCGCGATCTCTGGGACGAGAAGCTCCCCAAATACTTGCTGCTCCTCGCAGCGCTCGCGGCGGCCGTCACCTACCAAGCCGCGATGAGCCCGCCCGGTGGCCTCTGGGATGACGGCCAAACCGAGCACATCGTCGGTGACCCTGTTCTCCTGACCAACTATGCACGTCGCTACAAGGTCTTCTTCTACTGCAACGCGACGTCGTTCATGGCGTCGCTGGTGATAATGGTGTTGCTGCTGATCAAGAGGGTGAGCAACACCCAGCCGGCGCTCCTGGCGCTGCACGCCGCCATGATACTGGACCTGTTCGGCCTCATGGGCGTGTACGCCGCCGGGAGCTGCAGGAGGGTGACGACGTCGGCTTACATCTTGGCACTGCTCGTCGGGGTTTCGGCGTACATTGTTGTTCTTGTGGTGGTGTCCGTTGGTGTGGCGAGATGGATGAAGAAGGTGATGGACAAGGTGGGGGAGAAGCTCACACACTGCTTCTCCTTTGAAGATTTGTAGAGCCAAAGCCTGACTCGATGGCCCTGATGGATGGTGATCCTCTTTGTACAGTCACAACTCTGCCTGCAGAAGGAGGGTTTTTCCTAGGATTTGTACATAGTTCTATGTTGAATTTGATTTCCATATGTGTAGGAATTTCTAGTTTACTTGGTTTTTTTCATGTACATTGTAGTTTGTTTTTGAATTGTTGACAGCTTCTAGTTGCAATGCATGGAACCTTTTGTACTCATTGTACTAGCATAACTCGGATTAATTCTACT
More
|
||||||||||
| CDS seq | ATGGTGTTCTTCTACTCCAACGCCACCGCCTTCATCGCGTCGCTGGTCATCCTCATCCTCCTCTTGAGCAACATGATCAGCACGCAGGGGATCAAGTACTGTGCGCTGCAGGTCGCCATGATTCTGAACTTGTTTGGCCTGATCGGAGCTTACGCCGCTGGGAGCTGCAGGCAGGCGTCCAAATCCGTGTACGTCTCGGTTCTTGTTTTGCCGGTGTTTCTCTATGTTGGTATCCATGTCTTGGTGTTCATGCTCGAAGTGTCTCCGACATGGGCGACATGGCGAGTAGAAGTGAGGGAGAAGCTGAAGCAATGTATGCCTGAATGGCTCAAGAATCTGCTTGAGTTGGAGAAGCATGTCGAGGAGGAAGAGGAAGAGTGGAAGCTGGAGAAGAGGCGAAAGCTCCTACTCCTCGTTGCGATTCTTGCAGCAAGCCTCACCTACGAAGCAGGCATGAACCCACCGGGTGGTTTCTGGCAGGAGAAGAAGTCCGGCGATGTCGGTGACCCGGTGCTCAACAACGACAACTACCGGCACCGCTACCTGGCGTTCTTCTTCTGCAACACCACGGCGTTCGTCGCGTCCTTGGCCATCATCATGCTGCTGGTGAACCGGAAGCTCTCGGCGAGAGGAATCCGGTCGTACGCGCTGCGGGTGTGCGTGATCCTTGTCCTCGTCGGGCTCATGGGGGCCTTCGCCGCCGGCAGCTGCAGGAAGGTGAAGACGTCCATCTATGTCTTCGTCTTGGTCCTCGCCGTTCTGCTCTGCATCGCGTTCCAGGTCGCACTGGTCGTGTCGGGGTCGCTGCGACGTCTCGTCAACAGCCTCCTCTCCAAGCTAGGGGCGCCGCTTGAGGAGGACGCCGCGCTCGCGGCGGCCGTCACCTACCAAGCCGCGATGAGCCCGCCCGGTGGCCTCTGGGATGACGGCCAAACCGAGCACATCGTCGGTGACCCTGTTCTCCTGACCAACTATGCACGTCGCTACAAGGTCTTCTTCTACTGCAACGCGACGTCGTTCATGGCGTCGCTGGTGATAATGGTGTTGCTGCTGATCAAGAGGGTGAGCAACACCCAGCCGGCGCTCCTGGCGCTGCACGCCGCCATGATACTGGACCTGTTCGGCCTCATGGGCGTGTACGCCGCCGGGAGCTGCAGGAGGGTGACGACGTCGGCTTACATCTTGGCACTGCTCGTCGGGGTTTCGGCGTACATTGTTGTTCTTGTGGTGGTGTCCGTTGGTGTGGCGAGATGGATGAAGAAGGTGATGGACAAGGTGGGGGAGAAGCTCACACACTGCTTCTCCTTTGAAGATTTGTAG
More
|
||||||||||
| Protein seq | MVFFYSNATAFIASLVILILLLSNMISTQGIKYCALQVAMILNLFGLIGAYAAGSCRQASKSVYVSVLVLPVFLYVGIHVLVFMLEVSPTWATWRVEVREKLKQCMPEWLKNLLELEKHVEEEEEEWKLEKRRKLLLLVAILAASLTYEAGMNPPGGFWQEKKSGDVGDPVLNNDNYRHRYLAFFFCNTTAFVASLAIIMLLVNRKLSARGIRSYALRVCVILVLVGLMGAFAAGSCRKVKTSIYVFVLVLAVLLCIAFQVALVVSGSLRRLVNSLLSKLGAPLEEDAALAAAVTYQAAMSPPGGLWDDGQTEHIVGDPVLLTNYARRYKVFFYCNATSFMASLVIMVLLLIKRVSNTQPALLALHAAMILDLFGLMGVYAAGSCRRVTTSAYILALLVGVSAYIVVLVVVSVGVARWMKKVMDKVGEKLTHCFSFEDL |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0035600 | OsMH63_12T0035600.1 | Chr12 | 2052461 | 2054126 | + | maker | ||
| CDS seq | ATGGTGTTCTTCTACTCCAACGCCACCGCCTTCATCGCGTCGCTGGTCATCCTCATCCTCCTCTTGAGCAACATGATCAGCACGCAGGGGATCAAGTACTGTGCGCTGCAGGTCGCCATGATTCTGAACTTGTTTGGCCTGATCGGAGCTTACGCCGCTGGGAGCTGCAGGCAGGCGTCCAAATCCGTGTACGTCTCGGTTCTTGTTTTGCCGGTGTTTCTCTATGTTGGTATCCATGTCTTGGTGTTCATGCTCGAAGTGTCTCCGACATGGGCGACATGGCGAGTAGAAGTGAGGGAGAAGCTGAAGCAATGTATGCCTGAATGGCTCAAGAATCTGCTTGAGTTGGAGAAGCATGTCGAGGAGGAAGAGGAAGAGTGGAAGCTGGAGAAGAGGCGAAAGCTCCTACTCCTCGTTGCGATTCTTGCAGCAAGCCTCACCTACGAAGCAGGCATGAACCCACCGGGTGGTTTCTGGCAGGAGAAGAAGTCCGGCGATGTCGGTGACCCGGTGCTCAACAACGACAACTACCGGCACCGCTACCTGGCGTTCTTCTTCTGCAACACCACGGCGTTCGTCGCGTCCTTGGCCATCATCATGCTGCTGGTGAACCGGAAGCTCTCGGCGAGAGGAATCCGGTCGTACGCGCTGCGGGTGTGCGTGATCCTTGTCCTCGTCGGGCTCATGGGGGCCTTCGCCGCCGGCAGCTGCAGGAAGGTGAAGACGTCCATCTATGTCTTCGTCTTGGTCCTCGCCGTTCTGCTCTGCATCGCGTTCCAGGTCGCACTGGTCGTGTCGGGGTCGCTGCGACGTCTCGTCAACAGCCTCCTCTCCAAGCTAGGGGCGCCGCTTGAGGAGGACGCCGCGCTCGCGGCGGCCGTCACCTACCAAGCCGCGATGAGCCCGCCCGGTGGCCTCTGGGATGACGGCCAAACCGAGCACATCGTCGGTGACCCTGTTCTCCTGACCAACTATGCACGTCGCTACAAGGTCTTCTTCTACTGCAACGCGACGTCGTTCATGGCGTCGCTGGTGATAATGGTGTTGCTGCTGATCAAGAGGGTGAGCAACACCCAGCCGGCGCTCCTGGCGCTGCACGCCGCCATGATACTGGACCTGTTCGGCCTCATGGGCGTGTACGCCGCCGGGAGCTGCAGGAGGGTGACGACGTCGGCTTACATCTTGGCACTGCTCGTCGGGGTTTCGGCGTACATTGTTGTTCTTGTGGTGGTGTCCGTTGGTGTGGCGAGATGGATGAAGAAGGTGATGGACAAGGTGGGGGAGAAGCTCACACACTGCTTCTCCTTTGAAGATTTGTAG
More
|
|||||||
| Protein seq | MVFFYSNATAFIASLVILILLLSNMISTQGIKYCALQVAMILNLFGLIGAYAAGSCRQASKSVYVSVLVLPVFLYVGIHVLVFMLEVSPTWATWRVEVREKLKQCMPEWLKNLLELEKHVEEEEEEWKLEKRRKLLLLVAILAASLTYEAGMNPPGGFWQEKKSGDVGDPVLNNDNYRHRYLAFFFCNTTAFVASLAIIMLLVNRKLSARGIRSYALRVCVILVLVGLMGAFAAGSCRKVKTSIYVFVLVLAVLLCIAFQVALVVSGSLRRLVNSLLSKLGAPLEEDAALAAAVTYQAAMSPPGGLWDDGQTEHIVGDPVLLTNYARRYKVFFYCNATSFMASLVIMVLLLIKRVSNTQPALLALHAAMILDLFGLMGVYAAGSCRRVTTSAYILALLVGVSAYIVVLVVVSVGVARWMKKVMDKVGEKLTHCFSFEDL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0.106695 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0144900 | SBH | 0.0 | 0.300726 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04690 | RBH | 0.110476 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0144900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002820 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0003040 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0003050 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002840 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0003070 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0039000 | RBH | 0.2767075 | 19.346219 | 0.015936 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0003050 | SBH | 0.0 | 0.040534 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0037800 | RBH | 0 | 0.0120065 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002830 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0003050 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0003080 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0003010 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002960 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002870 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0003100 | SBH | 0.0 | 0.0 | 0.0 |
