Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_11G0439800 | OGI:11081880 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr11:33010616-33012235 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGTCTGCCGTGGCGAGCGCATTGCTGAAGAGCGTCATGGGGAGGCTCTTCACGGTGCTAGAGAAGGAGTACAGCAAGCACAGGGAGCTGGCTCAAGAAACCAACTCCCTCCAGCAGGACCTCCGCATCGTTGCGGCGGCCATGGACGACCAGCTCCTTTCCATCAGGAGGAGCGACGCCCGCACGGCCGTCGCGCGGCTGCACAGCAAGGAGATGCTCGATCTTGCGCATGACATCGAGGACTACGTCGACCGCTTCATCCACCATCTCACTTGCAGGCAGCAGTGTGCTAGTGCCGGCCGGAACTCCCTTCTGGACCGGGTCGCCCACGAGCTCAAGAAGGTTCAGAGCCGCTCGAGCTTCGCCAACGAGATCCAGAAGCTCAAGAGGCCCCTCAGGCAAGTGCACCAGGATGTCATCAAGAACAATCCACTGGCTGGTGGTCAATCATCTTCCCCGTCTCCGCAAGATCGTCGCATCGCGGATAACCCGGTGGGCATAGAGGAGCCCGTGGAGGAGCTCCTCTCGCTGCTGGATGAGGTTGAGGGTGAGCCGGAGCGAATGAGGGTCATCTCCATCGTGGGATTCGGTGGATTGGGGAAGACAACCCTCGCCAAGGCGGTCTATGATAGCCCTCGCGTGAAGGAGAAATTCCACCTCCGTGCATGGGTTCCCGCCGGTGCCTCTCCGGAGACAAGCAGTGGGATGAGGGGGATCTTGCGTGCTGTGATACAAAAAATTCTTCCCAATGTTGCCATGGATGTTGACGGCCAACTTGAAACCTCGCTCAAAGAATACCTCAAGGACAAGAGGTGGGTGCACATTTTTCATTTTCCAGATCTGAATACCTCAATGATCCCTTTTCTATTACCTAGCACTCCAATCCAAATGATTGCTAACTAATATTTACTCCCTCCATCCAAATATAAGCACTTGTGGGTCTTTTTAGAGAGATTAGGGATGGGGAGAATAGACTACACTGCCCTATATTTCTAGACAAATTTCTAATGCTAAGAGTCTTTATATTTTGTTTATGGAGAGAGTAGTCGCTGAGTTGTGCGCTCTATCGAATGTTATTACTATATTATAATTATTAAAAGTTCATATGTTTAATATGGATTGTAGAGGCTGGGTAAAAAAATACCCTTCACTAAAAAAATATGTTTGATATGGATGCCATTTTCTGAATGGTTTATAGTTACAAAGAATAGAGTAGACCATTTACAGCTTTCAAATTATTTATTTTTAAATTTAAAATTAGATTAATAAAATACTAAATGGAGAGCCTAAGATTAATACAGTTTTTATATTTGTTCATTCCATATTTTAGAATTACTAATTTCATAATAACTAAACATAAACAGTACATAGTGTTTCAAGTTTTATTTAATATGTATAAGGGAAAGGATACATGCGCATAGAAAGTATTTTACAAGTGTTCAAAAGATACTGATGTATCATGCTATGATTAGATCTTGATTTTTTAAAAAATTTTCAACTAATGGAATTAAACGGTTGAGATGCTTGTTAGTAGGAACTTTGTAACAAATTGTGATAATGAGATCCATGACATCAATGTTGCTTCTATAATTTCTCAATTCCGTTATTAGGTATTAA
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| CDS seq | ATGGAGTCTGCCGTGGCGAGCGCATTGCTGAAGAGCGTCATGGGGAGGCTCTTCACGGTGCTAGAGAAGGAGTACAGCAAGCACAGGGAGCTGGCTCAAGAAACCAACTCCCTCCAGCAGGACCTCCGCATCGTTGCGGCGGCCATGGACGACCAGCTCCTTTCCATCAGGAGGAGCGACGCCCGCACGGCCGTCGCGCGGCTGCACAGCAAGGAGATGCTCGATCTTGCGCATGACATCGAGGACTACGTCGACCGCTTCATCCACCATCTCACTTGCAGGCAGCAGTGTGCTAGTGCCGGCCGGAACTCCCTTCTGGACCGGGTCGCCCACGAGCTCAAGAAGGTTCAGAGCCGCTCGAGCTTCGCCAACGAGATCCAGAAGCTCAAGAGGCCCCTCAGGCAAGTGCACCAGGATGTCATCAAGAACAATCCACTGGCTGGTGGTCAATCATCTTCCCCGTCTCCGCAAGATCGTCGCATCGCGGATAACCCGGTGGGCATAGAGGAGCCCGTGGAGGAGCTCCTCTCGCTGCTGGATGAGGTTGAGGGTGAGCCGGAGCGAATGAGGGTCATCTCCATCGTGGGATTCGGTGGATTGGGGAAGACAACCCTCGCCAAGGCGGTCTATGATAGCCCTCGCGTGAAGGAGAAATTCCACCTCCGTGCATGGGTTCCCGCCGGTGCCTCTCCGGAGACAAGCAGTGGGATGAGGGGGATCTTGCGTGCTGTGATACAAAAAATTCTTCCCAATGTTGCCATGGATGTTGACGGCCAACTTGAAACCTCGCTCAAAGAATACCTCAAGGACAAGAGGTATTAA
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| Protein seq | MESAVASALLKSVMGRLFTVLEKEYSKHRELAQETNSLQQDLRIVAAAMDDQLLSIRRSDARTAVARLHSKEMLDLAHDIEDYVDRFIHHLTCRQQCASAGRNSLLDRVAHELKKVQSRSSFANEIQKLKRPLRQVHQDVIKNNPLAGGQSSSPSPQDRRIADNPVGIEEPVEELLSLLDEVEGEPERMRVISIVGFGGLGKTTLAKAVYDSPRVKEKFHLRAWVPAGASPETSSGMRGILRAVIQKILPNVAMDVDGQLETSLKEYLKDKRY |
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| Function | Disease resistance protein RGA4 [UniProtKB/Swiss-Prot:F7J0M6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_11G0439800 | OsMH63_11T0439800.1 | Chr11 | 33010616 | 33012235 | + | maker | ||
| CDS seq | ATGGAGTCTGCCGTGGCGAGCGCATTGCTGAAGAGCGTCATGGGGAGGCTCTTCACGGTGCTAGAGAAGGAGTACAGCAAGCACAGGGAGCTGGCTCAAGAAACCAACTCCCTCCAGCAGGACCTCCGCATCGTTGCGGCGGCCATGGACGACCAGCTCCTTTCCATCAGGAGGAGCGACGCCCGCACGGCCGTCGCGCGGCTGCACAGCAAGGAGATGCTCGATCTTGCGCATGACATCGAGGACTACGTCGACCGCTTCATCCACCATCTCACTTGCAGGCAGCAGTGTGCTAGTGCCGGCCGGAACTCCCTTCTGGACCGGGTCGCCCACGAGCTCAAGAAGGTTCAGAGCCGCTCGAGCTTCGCCAACGAGATCCAGAAGCTCAAGAGGCCCCTCAGGCAAGTGCACCAGGATGTCATCAAGAACAATCCACTGGCTGGTGGTCAATCATCTTCCCCGTCTCCGCAAGATCGTCGCATCGCGGATAACCCGGTGGGCATAGAGGAGCCCGTGGAGGAGCTCCTCTCGCTGCTGGATGAGGTTGAGGGTGAGCCGGAGCGAATGAGGGTCATCTCCATCGTGGGATTCGGTGGATTGGGGAAGACAACCCTCGCCAAGGCGGTCTATGATAGCCCTCGCGTGAAGGAGAAATTCCACCTCCGTGCATGGGTTCCCGCCGGTGCCTCTCCGGAGACAAGCAGTGGGATGAGGGGGATCTTGCGTGCTGTGATACAAAAAATTCTTCCCAATGTTGCCATGGATGTTGACGGCCAACTTGAAACCTCGCTCAAAGAATACCTCAAGGACAAGAGGTATTAA
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| Protein seq | MESAVASALLKSVMGRLFTVLEKEYSKHRELAQETNSLQQDLRIVAAAMDDQLLSIRRSDARTAVARLHSKEMLDLAHDIEDYVDRFIHHLTCRQQCASAGRNSLLDRVAHELKKVQSRSSFANEIQKLKRPLRQVHQDVIKNNPLAGGQSSSPSPQDRRIADNPVGIEEPVEELLSLLDEVEGEPERMRVISIVGFGGLGKTTLAKAVYDSPRVKEKFHLRAWVPAGASPETSSGMRGILRAVIQKILPNVAMDVDGQLETSLKEYLKDKRY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 6.1481845 | 0.0030705 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0686500 | SBH | 0.321495 | 0.197166 | 0.314310 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45930 | SBH | 0.217355 | 0.132576 | 0.080888 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0686500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024410 | RBH | 0.0 | 15.163236 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024260 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023860 | SBH | 0.0 | 1.322669 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023650 | SBH | 0.0 | 0.197950 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024210 | SBH | 0.0 | 11.752098 | 1.288887 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0439300 | SBH | 0.1263015 | 3.8706495 | 0.020055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024590 | RBH | 0.0 | 0.028560 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0437400 | SBH | 0.15966 | 14.476417 | 0.4748625 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024470 | RBH | 0.0 | 0.115357 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024480 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023800 | RBH | 0.0 | 11.085057 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023700 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024070 | SBH | 0.0 | 4.130706 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024080 | SBH | 0.0 | 2.264721 | 0.316824 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024280 | SBH | 0.0 | 6.607381 | 0.349635 |
