Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_11G0423400 | OGI:11079560 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr11:31610870-31612237 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACTCAATTATGGCGGAGGCAATGGCGATGGTGTTGCTGGAGAGCTCGGCGAGGATCTTGTCGAGGTCGCCCATGATCGGCTTGAGCCCCTCGCGCTCGCTGAAGCCGTCCTCGCAGGTGTCGACGTCGGTGCGCGCGGAGTCGAGCATGGTGTGCGCCGTGTCCTTGTCCCCCTTCTTGAGCGCCGCGTCCGCCGAGTCCAGGTTGGATTTCATGTCGTCGTACATCTGGAGGCAGTCGCCCATGGCGTCCTTGGACACCTCGTCCCCGGAGGCCGCCCCCATCCTGTTCGTCGCCACGCTGATCGCCTCCTGCACCTTGGCGCGCAGCGCGTTCATGGAGAGCCTGAGGACGCCGATGTCGTCCAGCTGCGCCGGCGGCTGCTGCGGCAGCTGCCCGATGGAGGACTCGCACAGGTCGGCGTGGTCCGTCTTGCCGCACAGCGCCTTCACCACTGGGTTCAGCGCCTGCATCACCGGCTGCGCGATCATGTCCGGGTCCGGGAGCGACATGGTGCCCGAGTGGTGCTCATTCTTCGGCGCCGATGTCGATGCCGATGCCGATGCCGAGCCGCCTTCCTCGTCTTCTTCCTTTGGTTTGGCCGCGGCTTGGCCCTCGGATTTTGATTTCTTCTCATCTTCTTCGTCGGAGGAGGAGGATTTGCTCTTGCTTTTGGATTTCTTCTTGGGCTTTTCATCATCTTCCTTATCGGAGCTCTTGCCCTTGAATTTCTTCTTCTTCTTCTTCTTGGCACCGTCGTTGTCTTCATCGGAGCTCTTCTTTTTCGATTTCTTCTTGTCATCTTCATCGTCGTCCGGGTTCTTGGGTTTCTTCTTGGATTTCTTCTTGTCATCTTCATCGTCGTCCGAGTTCTTCGATTTCTTCTTGGATTTCTTCTCGGCATCATCATCATCATCATCGGAGCTCTTGCTTTTGGATTTCTTCTTCTTCTTCTTCTTCTTTTTCTCCGACTCATCCTCGCCATCGTCGGTGCCATCTTCCACGGGTTCTGCTATACTGTCCGCGGGTTCTGCTTGACTATCATCGACGGAGAGGGTAGTCAAGCCGCCACTGGATTTAGGTTTCTTGCTCTCATTCACGGCGGCGCCATCATCGGAGGAGTCCTTCTTGATCTCCGGTACGCTCTCACCGACGGACATGGTGGTTAACCCGCCGTTGGAGCCGGGTTTCTTCTCCAGTGAAGCGTGGGCCGCAGCCGCGCCCGCACCACCGGGTTCCCCCTCCTCGCCTTCGGGTTTGTTCTTCGCGATGCACTTCGCCGATGCGAGGGTGGTGGCGGCGATGGTGAGGAGGATGAGGAGGGCGGCGAGGGCGAGTTTCGCCCTCGTCGGGATCCTTGGAGACAT
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| CDS seq | ATGTCTCCAAGGATCCCGACGAGGGCGAAACTCGCCCTCGCCGCCCTCCTCATCCTCCTCACCATCGCCGCCACCACCCTCGCATCGGCGAAGTGCATCGCGAAGAACAAACCCGAAGGCGAGGAGGGGGAACCCGGTGGTGCGGGCGCGGCTGCGGCCCACGCTTCACTGGAGAAGAAACCCGGCTCCAACGGCGGGTTAACCACCATGTCCGTCGGTGAGAGCGTACCGGAGATCAAGAAGGACTCCTCCGATGATGGCGCCGCCGTGAATGAGAGCAAGAAACCTAAATCCAGTGGCGGCTTGACTACCCTCTCCGTCGATGATAGTCAAGCAGAACCCGCGGACAGTATAGCAGAACCCGTGGAAGATGGCACCGACGATGGCGAGGATGAGTCGGAGAAAAAGAAGAAGAAGAAGAAGAAGAAATCCAAAAGCAAGAGCTCCGATGATGATGATGATGATGCCGAGAAGAAATCCAAGAAGAAATCGAAGAACTCGGACGACGATGAAGATGACAAGAAGAAATCCAAGAAGAAACCCAAGAACCCGGACGACGATGAAGATGACAAGAAGAAATCGAAAAAGAAGAGCTCCGATGAAGACAACGACGGTGCCAAGAAGAAGAAGAAGAAGAAATTCAAGGGCAAGAGCTCCGATAAGGAAGATGATGAAAAGCCCAAGAAGAAATCCAAAAGCAAGAGCAAATCCTCCTCCTCCGACGAAGAAGATGAGAAGAAATCAAAATCCGAGGGCCAAGCCGCGGCCAAACCAAAGGAAGAAGACGAGGAAGGCGGCTCGGCATCGGCATCGGCATCGACATCGGCGCCGAAGAATGAGCACCACTCGGGCACCATGTCGCTCCCGGACCCGGACATGATCGCGCAGCCGGTGATGCAGGCGCTGAACCCAGTGGTGAAGGCGCTGTGCGGCAAGACGGACCACGCCGACCTGTGCGAGTCCTCCATCGGGCAGCTGCCGCAGCAGCCGCCGGCGCAGCTGGACGACATCGGCGTCCTCAGGCTCTCCATGAACGCGCTGCGCGCCAAGGTGCAGGAGGCGATCAGCGTGGCGACGAACAGGATGGGGGCGGCCTCCGGGGACGAGGTGTCCAAGGACGCCATGGGCGACTGCCTCCAGATGTACGACGACATGAAATCCAACCTGGACTCGGCGGACGCGGCGCTCAAGAAGGGGGACAAGGACACGGCGCACACCATGCTCGACTCCGCGCGCACCGACGTCGACACCTGCGAGGACGGCTTCAGCGAGCGCGAGGGGCTCAAGCCGATCATGGGCGACCTCGACAAGATCCTCGCCGAGCTCTCCAGCAACACCATCGCCATTGCCTCCGCCATAATTGAGTGA
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| Protein seq | MSPRIPTRAKLALAALLILLTIAATTLASAKCIAKNKPEGEEGEPGGAGAAAAHASLEKKPGSNGGLTTMSVGESVPEIKKDSSDDGAAVNESKKPKSSGGLTTLSVDDSQAEPADSIAEPVEDGTDDGEDESEKKKKKKKKKSKSKSSDDDDDDAEKKSKKKSKNSDDDEDDKKKSKKKPKNPDDDEDDKKKSKKKSSDEDNDGAKKKKKKKFKGKSSDKEDDEKPKKKSKSKSKSSSSDEEDEKKSKSEGQAAAKPKEEDEEGGSASASASTSAPKNEHHSGTMSLPDPDMIAQPVMQALNPVVKALCGKTDHADLCESSIGQLPQQPPAQLDDIGVLRLSMNALRAKVQEAISVATNRMGAASGDEVSKDAMGDCLQMYDDMKSNLDSADAALKKGDKDTAHTMLDSARTDVDTCEDGFSEREGLKPIMGDLDKILAELSSNTIAIASAIIE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_11G0423400 | OsMH63_11T0423400.1 | Chr11 | 31610870 | 31612237 | - | maker | ||
| CDS seq | ATGTCTCCAAGGATCCCGACGAGGGCGAAACTCGCCCTCGCCGCCCTCCTCATCCTCCTCACCATCGCCGCCACCACCCTCGCATCGGCGAAGTGCATCGCGAAGAACAAACCCGAAGGCGAGGAGGGGGAACCCGGTGGTGCGGGCGCGGCTGCGGCCCACGCTTCACTGGAGAAGAAACCCGGCTCCAACGGCGGGTTAACCACCATGTCCGTCGGTGAGAGCGTACCGGAGATCAAGAAGGACTCCTCCGATGATGGCGCCGCCGTGAATGAGAGCAAGAAACCTAAATCCAGTGGCGGCTTGACTACCCTCTCCGTCGATGATAGTCAAGCAGAACCCGCGGACAGTATAGCAGAACCCGTGGAAGATGGCACCGACGATGGCGAGGATGAGTCGGAGAAAAAGAAGAAGAAGAAGAAGAAGAAATCCAAAAGCAAGAGCTCCGATGATGATGATGATGATGCCGAGAAGAAATCCAAGAAGAAATCGAAGAACTCGGACGACGATGAAGATGACAAGAAGAAATCCAAGAAGAAACCCAAGAACCCGGACGACGATGAAGATGACAAGAAGAAATCGAAAAAGAAGAGCTCCGATGAAGACAACGACGGTGCCAAGAAGAAGAAGAAGAAGAAATTCAAGGGCAAGAGCTCCGATAAGGAAGATGATGAAAAGCCCAAGAAGAAATCCAAAAGCAAGAGCAAATCCTCCTCCTCCGACGAAGAAGATGAGAAGAAATCAAAATCCGAGGGCCAAGCCGCGGCCAAACCAAAGGAAGAAGACGAGGAAGGCGGCTCGGCATCGGCATCGGCATCGACATCGGCGCCGAAGAATGAGCACCACTCGGGCACCATGTCGCTCCCGGACCCGGACATGATCGCGCAGCCGGTGATGCAGGCGCTGAACCCAGTGGTGAAGGCGCTGTGCGGCAAGACGGACCACGCCGACCTGTGCGAGTCCTCCATCGGGCAGCTGCCGCAGCAGCCGCCGGCGCAGCTGGACGACATCGGCGTCCTCAGGCTCTCCATGAACGCGCTGCGCGCCAAGGTGCAGGAGGCGATCAGCGTGGCGACGAACAGGATGGGGGCGGCCTCCGGGGACGAGGTGTCCAAGGACGCCATGGGCGACTGCCTCCAGATGTACGACGACATGAAATCCAACCTGGACTCGGCGGACGCGGCGCTCAAGAAGGGGGACAAGGACACGGCGCACACCATGCTCGACTCCGCGCGCACCGACGTCGACACCTGCGAGGACGGCTTCAGCGAGCGCGAGGGGCTCAAGCCGATCATGGGCGACCTCGACAAGATCCTCGCCGAGCTCTCCAGCAACACCATCGCCATTGCCTCCGCCATAATTGAGTGA
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| Protein seq | MSPRIPTRAKLALAALLILLTIAATTLASAKCIAKNKPEGEEGEPGGAGAAAAHASLEKKPGSNGGLTTMSVGESVPEIKKDSSDDGAAVNESKKPKSSGGLTTLSVDDSQAEPADSIAEPVEDGTDDGEDESEKKKKKKKKKSKSKSSDDDDDDAEKKSKKKSKNSDDDEDDKKKSKKKPKNPDDDEDDKKKSKKKSSDEDNDGAKKKKKKKFKGKSSDKEDDEKPKKKSKSKSKSSSSDEEDEKKSKSEGQAAAKPKEEDEEGGSASASASTSAPKNEHHSGTMSLPDPDMIAQPVMQALNPVVKALCGKTDHADLCESSIGQLPQQPPAQLDDIGVLRLSMNALRAKVQEAISVATNRMGAASGDEVSKDAMGDCLQMYDDMKSNLDSADAALKKGDKDTAHTMLDSARTDVDTCEDGFSEREGLKPIMGDLDKILAELSSNTIAIASAIIE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.028947 | 0.01182 | 0.009711 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0677400 | RBH | 0.0 | 0.0 | 21.147079 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45220 | RBH | 0.0 | 0.0 | 5.205172 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0677400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023890 | RBH | 0.0 | 0.0 | 2.412395 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023570 | RBH | 0.0 | 0.0 | 13.350870 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023210 | RBH | 0.0 | 0.0 | 22.419870 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023170 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023800 | RBH | 0.0 | 0.0 | 18.489075 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024100 | RBH | 0.0 | 0.0 | 11.101772 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0432100 | RBH | 1.019456 | 8.0606755 | 2.9929875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023860 | RBH | 0.101332 | 0.084499 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023860 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023430 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023120 | RBH | 0.0 | 0.0 | 2.104256 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023330 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023400 | RBH | 0.0 | 0.0 | 4.501593 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023830 | RBH | 0.0 | 0.0 | 35.400814 |
