Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_11G0383600 | OGI:11072710 | 6/16 | Minghui 63 | MH63RS3 | HZAU | Chr11:28992696-28994242 | ||||||||
| Gene Symbol | TBT2, Os-TBT2, OsTBT2 | ||||||||||
| DNA seq | TCATTTCTTGAGCGGATACAATGCACGCATCAAGATGCCGCAGGCCCCTTCCTTGCCGGTGGCGGCGCTGACGTCACGGCTGATGCGGATGCAGCCGTTCTCGCCCCAGGCTGCACCCCACGAGTTCTTGGCGATCCAGTAGCCGACGCCGGAGTCCTCGTCGGCGCCGTATCCCACCACCGCCACCTCGTGCCCTGGCTTCGTGCCCGGTCAGGGTTGGAAATTTTGGAAAAATTTCGGTCATTTTGGTGACCCTCGATATGATATTAATTCGGCCGAAATTTTTAAATTTTTCAATTTTTTCATAAATTTAGATAATATTTGTTCAAAATTTCAGAAATTTCGAGATTTCGGTGACCCCCGATACAAAACTCTAAACCGATATAGTGAACCCTGCCCACGGCCCGTCGAACACTCCCCCGGCGTAGTCCTTGAACGCGCTCCCGCTCGCGTTGATGAACACGACGACGGGCTGCGCCGCCACCGCCTTCCTCAGCGTGGGCTCGTCGTACTGCGGGACGCGCGCGAACCCGTCGATGGCCGTCGCGGCGGAGACGGCGGGCGGCGCCGCCGTGCTGCTACTGTCGTCGAGGAGGCAGGTGGACTGCGTGGCCGTGTACGGGTACGCCGCCTCCGACGCCATGCCGCCGCGGCGCGCGACGTAGTCCAGCGCCGTCGACGCCCACCCGTTGGCGCAGCCGTGGCTCGCCGCGACGCAGTCGACGAGCTGCTGCGACGACAGCGACGACAGGTTGTTCGTCCGGATGGACGCGATGCCCTCCACCGCCGCTGCCGCCGCGAACGCCCAGCAGCTCCCGCACTCCCCCTGGTCCTTCACCTCCGTCACCGCCTCCGGGACGAGGTTGTACCGCATCTGCCGCCAGTCGACCGCCGCCGGGAGGTCGAACTCATCGACGGCGCCGTGCGTGAACCCGCCGGCGCCGGTGTCGGCATCAAGCTCGCGTTGCTGCTGCTGATCCTCCGGTAATGGCGTGGAGCAGCGGCCGAAGTTGTCGGCGAACTCGTCGTCGGTGGTGTGCACGGCGAGGTTTCGTCGTCGGTGATGCCGTCGACCTGGCCAACGCGCGCGCGGGCCTTGAGCTCGTCGACGAACTCGGCCGTGAAGTGCACGGCGAGGTTTCTGATGTCCTTGTCCATATTGGTGTCGACGGCGCCGGTGCCGAACGGCTTTCTGCCGGCGTGATTTCCTACCTCGAACTCGATGGACCGGCGGTCGAACACCGGCGCCGGCGGGCTGCGTGGCGCGCCGGTGACCGCGCGGTCGAGGAACGGAGACGGGACGTTGAATGCCTCGCCCTCGCGCACCGCCCGCGCCCACGTGGCGCAGAAGGCGCTCATGGAGTGGCCGTCGCCGACGTGGTGGTGGACGATGAGGCCGACGGCGAGGCCGCCGCACCTGAAGCGGCTGAGCTGTACCTGCAGAAGCGCCGCCCCGAAGTTGTCCTCCGGTAGCTGAGGGGGACCTTCTCGCCGGCGAGCGGGTGCGGCGCCGTGCCGTACGCCGTCGCCGGCGGCGGCTTCAGCAT
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| CDS seq | ATGCTGAAGCCGCCGCCGGCGACGGCGTACGGCACGGCGCCGCACCCGCTCGCCGGCGAGAAGGTACAGCTCAGCCGCTTCAGGTGCGGCGGCCTCGCCGTCGGCCTCATCGTCCACCACCACGTCGGCGACGGCCACTCCATGAGCGCCTTCTGCGCCACGTGGGCGCGGGCGGTGCGCGAGGGCGAGGCATTCAACGTCCCGTCTCCGTTCCTCGACCGCGCGGTCACCGGCGCGCCACGCAGCCCGCCGGCGCCGGTGTTCGACCGCCGGTCCATCGAGTTCGAGGTAGGAAATCACGCCGGCAGAAAGCCGTTCGGCACCGGCGCCGTCGACACCAATATGGACAAGGACATCAGAAACCTCGCCGTGCACTTCACGGCCGAGTTCGTCGACGAGCTCAAGGCCCGCGCGCGCGTTGGCCAGTTCGCCGACAACTTCGGCCGCTGCTCCACGCCATTACCGGAGGATCAGCAGCAGCAACGCGAGCTTGATGCCGACACCGGCGCCGGCGGGTTCACGCACGGCGCCGTCGATGAGTTCGACCTCCCGGCGGCGGTCGACTGGCGGCAGATGCGGTACAACCTCGTCCCGGAGGCGGTGACGGAGGTGAAGGACCAGGGGGAGTGCGGGAGCTGCTGGGCGTTCGCGGCGGCAGCGGCGGTGGAGGGCATCGCGTCCATCCGGACGAACAACCTGTCGTCGCTGTCGTCGCAGCAGCTCGTCGACTGCGTCGCGGCGAGCCACGGCTGCGCCAACGGGTGGGCGTCGACGGCGCTGGACTACGTCGCGCGCCGCGGCGGCATGGCGTCGGAGGCGGCGTACCCGTACACGGCCACGCAGTCCACCTGCCTCCTCGACGACAGTAGCAGCACGGCGGCGCCGCCCGCCGTCTCCGCCGCGACGGCCATCGACGGGTTCGCGCGCGTCCCGCAGTACGACGAGCCCACGCTGAGGAAGGCGGTGGCGGCGCAGCCCGTCGTCGTGTTCATCAACGCGAGCGGGAGCGCGTTCAAGGACTACGCCGGGGGAGTGTTCGACGGGCCGTGGGCAGGGTTCACTATATCGCCAGGGCACGAGGTGGCGGTGGTGGGATACGGCGCCGACGAGGACTCCGGCGTCGGCTACTGGATCGCCAAGAACTCGTGGGGTGCAGCCTGGGGCGAGAACGGCTGCATCCGCATCAGCCGTGACGTCAGCGCCGCCACCGGCAAGGAAGGGGCCTGCGGCATCTTGATGCGTGCATTGTATCCGCTCAAGAAATGA
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| Protein seq | MLKPPPATAYGTAPHPLAGEKVQLSRFRCGGLAVGLIVHHHVGDGHSMSAFCATWARAVREGEAFNVPSPFLDRAVTGAPRSPPAPVFDRRSIEFEVGNHAGRKPFGTGAVDTNMDKDIRNLAVHFTAEFVDELKARARVGQFADNFGRCSTPLPEDQQQQRELDADTGAGGFTHGAVDEFDLPAAVDWRQMRYNLVPEAVTEVKDQGECGSCWAFAAAAAVEGIASIRTNNLSSLSSQQLVDCVAASHGCANGWASTALDYVARRGGMASEAAYPYTATQSTCLLDDSSSTAAPPAVSAATAIDGFARVPQYDEPTLRKAVAAQPVVVFINASGSAFKDYAGGVFDGPWAGFTISPGHEVAVVGYGADEDSGVGYWIAKNSWGAAWGENGCIRISRDVSAATGKEGACGILMRALYPLKK |
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| Function | Vignain [UniProtKB/Swiss-Prot:O65039] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_11G0383600 | OsMH63_11T0383600.1 | Chr11 | 28992696 | 28994242 | - | maker | ||
| CDS seq | ATGCTGAAGCCGCCGCCGGCGACGGCGTACGGCACGGCGCCGCACCCGCTCGCCGGCGAGAAGGTACAGCTCAGCCGCTTCAGGTGCGGCGGCCTCGCCGTCGGCCTCATCGTCCACCACCACGTCGGCGACGGCCACTCCATGAGCGCCTTCTGCGCCACGTGGGCGCGGGCGGTGCGCGAGGGCGAGGCATTCAACGTCCCGTCTCCGTTCCTCGACCGCGCGGTCACCGGCGCGCCACGCAGCCCGCCGGCGCCGGTGTTCGACCGCCGGTCCATCGAGTTCGAGGTAGGAAATCACGCCGGCAGAAAGCCGTTCGGCACCGGCGCCGTCGACACCAATATGGACAAGGACATCAGAAACCTCGCCGTGCACTTCACGGCCGAGTTCGTCGACGAGCTCAAGGCCCGCGCGCGCGTTGGCCAGTTCGCCGACAACTTCGGCCGCTGCTCCACGCCATTACCGGAGGATCAGCAGCAGCAACGCGAGCTTGATGCCGACACCGGCGCCGGCGGGTTCACGCACGGCGCCGTCGATGAGTTCGACCTCCCGGCGGCGGTCGACTGGCGGCAGATGCGGTACAACCTCGTCCCGGAGGCGGTGACGGAGGTGAAGGACCAGGGGGAGTGCGGGAGCTGCTGGGCGTTCGCGGCGGCAGCGGCGGTGGAGGGCATCGCGTCCATCCGGACGAACAACCTGTCGTCGCTGTCGTCGCAGCAGCTCGTCGACTGCGTCGCGGCGAGCCACGGCTGCGCCAACGGGTGGGCGTCGACGGCGCTGGACTACGTCGCGCGCCGCGGCGGCATGGCGTCGGAGGCGGCGTACCCGTACACGGCCACGCAGTCCACCTGCCTCCTCGACGACAGTAGCAGCACGGCGGCGCCGCCCGCCGTCTCCGCCGCGACGGCCATCGACGGGTTCGCGCGCGTCCCGCAGTACGACGAGCCCACGCTGAGGAAGGCGGTGGCGGCGCAGCCCGTCGTCGTGTTCATCAACGCGAGCGGGAGCGCGTTCAAGGACTACGCCGGGGGAGTGTTCGACGGGCCGTGGGCAGGGTTCACTATATCGCCAGGGCACGAGGTGGCGGTGGTGGGATACGGCGCCGACGAGGACTCCGGCGTCGGCTACTGGATCGCCAAGAACTCGTGGGGTGCAGCCTGGGGCGAGAACGGCTGCATCCGCATCAGCCGTGACGTCAGCGCCGCCACCGGCAAGGAAGGGGCCTGCGGCATCTTGATGCGTGCATTGTATCCGCTCAAGAAATGA
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| Protein seq | MLKPPPATAYGTAPHPLAGEKVQLSRFRCGGLAVGLIVHHHVGDGHSMSAFCATWARAVREGEAFNVPSPFLDRAVTGAPRSPPAPVFDRRSIEFEVGNHAGRKPFGTGAVDTNMDKDIRNLAVHFTAEFVDELKARARVGQFADNFGRCSTPLPEDQQQQRELDADTGAGGFTHGAVDEFDLPAAVDWRQMRYNLVPEAVTEVKDQGECGSCWAFAAAAAVEGIASIRTNNLSSLSSQQLVDCVAASHGCANGWASTALDYVARRGGMASEAAYPYTATQSTCLLDDSSSTAAPPAVSAATAIDGFARVPQYDEPTLRKAVAAQPVVVFINASGSAFKDYAGGVFDGPWAGFTISPGHEVAVVGYGADEDSGVGYWIAKNSWGAAWGENGCIRISRDVSAATGKEGACGILMRALYPLKK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.699565 | 0.029542 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0643100 | SBH | 0.0 | 0.158066 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g42380 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0643100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021770 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021720 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021560 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021080 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021570 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0382800 | RBH | 0 | 0.0103245 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0022140 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0403700 | SBH | 0.488699 | 2.6336295 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0021920 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022020 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021670 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021260 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021430 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G021400 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0021950 | SBH | 0.0 | 0.0 | 0.0 |
