Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsMH63_11G0349600		OGI:11066300 \| 3/16			Minghui 63 \| MH63RS3 \| HZAU			Chr11:26152964-26156009		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		TCAACAGGCAGCGCCGAAAGTTGATAGTGATAACTCGAGCTGCCGCTTTTCATGTGTGCTGTTGTGGACTGTGCGCGCTACTGGATATGGCACTACCGTGAAGCGCCGAAAGTGTGTTGTTGTGAGCATAAGTTGTTAAAGCACCATATGAATGAAAAGAACTACGTAGACGAGACAAACACAAGTAGTAATGCAGTAGTAATAGCAAAAGTAGTACTGCTTTACAAGTTTGTAAGCCAAAAGAAACGGTCACATAAGGACTGAAGAGGTAGAACACTACTGACGAGGCCTCTTACCCCTGTCCCTCCTACCCTGCGCCCTAATGTGCCCCTGAGAGTACGTGAGTCGGTCCGGGGGTACGGCACGGCCAACCCGTCCTGCCTGTACAGGTGTGACCTCTGGCTGCTCCTGAGTGTGCGCCTCTGGAGCTCCTCCAAGCTGAGAGGAGCCTAGTACGTCCTGGTGGTCTGCACCGTGCAAGTCGTCGTCGTAGAACTGGCTAGTAGGACCAGTCCTACCGGCGTGAGACGAAGAGGCCCCAGTACCGAAGATCCCGGCTGCATATCCTGCTGGACAAGGACCATCAGTTTCGTACAAGTATTTAACAGTAGTAATAAAAAGTAAAGTACCGTGTGGGCGAGGGATCGACGCTCCGTGAGAGGAAGAGCTGGCGAACGCGCCCGAAGAGGTGGCGAACGCCCCTGCGGAGCTCGCGGAAGCGCCGGTCGTGCCTGTGAACGCGCTCGAAGGCAGACGAGGTCCTGCGATGAGGAAACGTGCAGTTAAAACATGGTGACACATTCGTGCAAAAGCTGAAACAAAAATGAACTAATATCTGGGCTGAACTGTACCGTGCGAAACCGGTGCTGTAGGTCGCACTGCTCCGAAGCTAGGGGCGCTCGAAGGCAAACGAGGTCCTGCTCCGACGGTAGGCGCGCGAGGCCGTGGGTGTACCGGACCAGCTGGAGGTACGACGTCCACGGCGCTGCGACAGGAGAAGACGCGCATGACCGCACGCATCTTCTCCTGCATCCGGTCGAAGGTCGCCCTCTGCTCAACGTCAGTCAAGTGCAAACCTCTGTTCAACCTCACCTGGACTGCGGTGATATCGGCACTGATATCCCGTGCGGCATCAGCCTATGCAAGATGGAAATAAAAAATTCAGTAGTTGTCCTATATTATGCAAGATAAATGAAATAATTGTTGGAAGTAATACAAATTGGACGTACCGCCACGAAGTAGTCTCGGTCACGGTGCGTGGGATACGCGTCCGTGACAGCGGCAACGTGCGGCTCTGGGGCGTCTGGAGTGAAGGTCACACGCGCACGAGTGCGAGGAAGGTACCAGCGAAGGTAGTCACGGTAGTTCTCCTCCGTGTGTGCGAAGAGCTCGTTGATCACCTCCTCTGTAGCTAACACCCAGTCGTCAACGTACTGCTGTACACGTGGAGCCCAAAGTGCGTCTGCTAGCTGTCCCCGTCGAGTCAACCTGTGAAGAGAGGTAAATTATATGGCTCGATGATGTAATTATCATAAAAATTTAGAAATGAACAATCCGAACTCACGAGTGGTCGGCAGGGGGGACGGTCGGCTGCACGTTGCCCGGAAACACCTGCCTAAGTCCGAACTGTCTCATCACACGCTGCGGGCAGTGAGGCTCGACGAAAATGTCGAACACCATCGGCAGGATGGTGAGCCAGTAAGCCTGGTCGCGTGTGCACAAGGACGAAAGTCCTAGCGGTGCTCTCGCAGCGACGGCCTCTTCTGTGTACGGCTCCCAGATGACGTCGCTCGGCTGGAGACGGTCAAACTCGAACACGAAGTCCGGGTAACCACGTCTCACCTGGACGTGAGCGTAACGACGCTGCAATAAACATGATCGGAATTAGACATGTTATGTGAAGGAAAAAAAAAGAAGAGGACTGATAAACTTATAACGCAGCGAAGTTGCACTAACCCCACGTCGACACCAGTAAGTCCCCATCGTGGGACCGTCCTCTGGCCACTGCGCGCTGCGACCAACCCCGTAGGGTGCGCTGTCCACCACTGGTCGCCCTATGGCAAACCTCTCGGCTGCCCAAAGCTGAAGCAACATAGGGCAGCCAGCGATGATCGCTCCCGCGTCAGTCTTCGTGCACGCCTCACAGAGGGCACGGTACGTGGCTGCTAGCACGGCAGAACCCCAGCTCCACTGCGGCACGTCCTGTGGCTGACCATCCGCGATGGACCGTGCGTAGTGGACCAGCCGGAAGTCCACAGCGTGCCCGTGGGTGCTAGTGAACATCACCCACCCGAACAACCACAACAGGTACGCCTCAAGGGAGCGTCGGACCGAGTAATCATCAGCGTCAGGGTGCAGAAGGTCCGCCTACAGTTAAGAATGAAATGTTAGTACAAAACACTCATCCGGTCGCAAATAAGCATGTATGATAATAACAACTTATTTACTTACAGTGAACTGGAGCAAACCAAGCCTTGCTAGGCCCGACTGTAGAGTACGGAGGAAGGGTGCTGGTCGGTCCTAGGTGTGGAAGGCGCATCACCTGCTCGAAGCGCGCAGTGATATCCTCCTTCCACCCAACAACACCGTCCACGGGACCAACTGGTGCTCCCGCCAGCGGTAGCCCGAGCAGGTACGACACGTCCTGCAGTGTCGGAGCCATCTCCCCACAGGGAAGGTGGAACGTGTGCGTCTCAGGTCTCCAGCGGTCTACAAGAGCGGCAAGGAGTGACCGGTCTGCATCCCACCGCTTCGCTGGGTCACGGTCGTCCGCCGCCGCCGCCTCAACAAGCCTACAAAGTGGTAGAAGGCCTGCCGCACGCAACCTGTATAGAGCAAACTTCAAACATAAGTACAACACAAAGCAAAGTTGAGTTGAAATGTGAACATACGCGTACCAAGGAACGTGACGGGGGTCGACACGCAACCACTCGCGCGACGTGCGTGGACGGAAGGTGCCGAGCTGTGCACCCTCGACTGCTGACAGGAACGAGCGGTGGTTCCTGTCAATCGCACGGTTCAGCAGCGCCGGTGTGTCGTACGCCAT More
CDS seq		ATGGCGTACGACACACCGGCGCTGCTGAACCGTGCGATTGACAGGAACCACCGCTCGTTCCTGTCAGCAGTCGAGGGTGCACAGCTCGGCACCTTCCGTCCACGCACGTCGCGCGAGTGGTTGCGTGTCGACCCCCGTCACGTTCCTTGGTTGCGTGCGGCAGGCCTTCTACCACTTTGTAGGCTTGTTGAGGCGGCGGCGGCGGACGACCGTGACCCAGCGAAGCGGTGGGATGCAGACCGGTCACTCCTTGCCGCTCTTGTAGACCGCTGGAGACCTGAGACGCACACGTTCCACCTTCCCTGTGGGGAGATGGCTCCGACACTGCAGGACGTGTCGTACCTGCTCGGGCTACCGCTGGCGGGAGCACCAGTTGGTCCCGTGGACGGTGTTGTTGGGTGGAAGGAGGATATCACTGCGCGCTTCGAGCAGGCGGACCTTCTGCACCCTGACGCTGATGATTACTCGGTCCGACGCTCCCTTGAGGCGTACCTGTTGTGGTTGTTCGGGTGGGTGATGTTCACTAGCACCCACGGGCACGCTGTGGACTTCCGGCTGGTCCACTACGCACGGTCCATCGCGGATGGTCAGCCACAGGACGTGCCGCAGTGGAGCTGGGGTTCTGCCGTGCTAGCAGCCACGTACCGTGCCCTCTGTGAGGCGTGCACGAAGACTGACGCGGGAGCGATCATCGCTGGCTGCCCTATGTTGCTTCAGCTTTGGGCAGCCGAGAGGTTTGCCATAGGGCGACCAGTGGTGGACAGCGCACCCTACGGGGTTGGTCGCAGCGCGCAGTGGCCAGAGGACGGTCCCACGATGGGGACTTACTGGTGTCGACGTGGGCGTCGTTACGCTCACGTCCAGGTGAGACGTGGTTACCCGGACTTCGTGTTCGAGTTTGACCGTCTCCAGCCGAGCGACGTCATCTGGGAGCCGTACACAGAAGAGGCCGTCGCTGCGAGAGCACCGCTAGGACTTTCGTCCTTGTGCACACGCGACCAGGCTTACTGGCTCACCATCCTGCCGATGGTGTTCGACATTTTCGTCGAGCCTCACTGCCCGCAGCGTGTGATGAGACAGTTCGGACTTAGGCAGGTGTTTCCGGGCAACGTGCAGCCGACCGTCCCCCCTGCCGACCACTCGTTGACTCGACGGGGACAGCTAGCAGACGCACTTTGGGCTCCACGTGTACAGCAGTACGTTGACGACTGGGTGTTAGCTACAGAGGAGGTGATCAACGAGCTCTTCGCACACACGGAGGAGAACTACCGTGACTACCTTCGCTGGTACCTTCCTCGCACTCGTGCGCGTGTGACCTTCACTCCAGACGCCCCAGAGCCGCACGTTGCCGCTGTCACGGACGCGTATCCCACGCACCGTGACCGAGACTACTTCGTGGCGGCTGATGCCGCACGGGATATCAGTGCCGATATCACCGCAGTCCAGGTGAGGTTGAACAGAGGTTTGCACTTGACTGACGTTGAGCAGAGGGCGACCTTCGACCGGATGCAGGAGAAGATGCGTGCGGTCATGCGCGTCTTCTCCTGTCGCAGCGCCGTGGACGTCGTACCTCCAGCTGGTCCGGTACACCCACGGCCTCGCGCGCCTACCGTCGGAGCAGGACCTCGTTTGCCTTCGAGCGCCCCTAGCTTCGGAGCAGTGCGACCTACAGCACCGGTTTCGCACGGACCTCGTCTGCCTTCGAGCGCGTTCACAGGCACGACCGGCGCTTCCGCGAGCTCCGCAGGGGCGTTCGCCACCTCTTCGGGCGCGTTCGCCAGCTCTTCCTCTCACGGAGCGTCGATCCCTCGCCCACACGCAGGATATGCAGCCGGGATCTTCGGTACTGGGGCCTCTTCGTCTCACGCCGGTAGGACTGGTCCTACTAGCCAGTTCTACGACGACGACTTGCACGGTGCAGACCACCAGGACGTACTAGGCTCCTCTCAGCTTGGAGGAGCTCCAGAGGCGCACACTCAGGAGCAGCCAGAGGTCACACCTGTACAGGCAGGACGGGTTGGCCGTGCCGTACCCCCGGACCGACTCACGTACTCTCAGGGGCACATTAGGGCGCAGGGTAGGAGGGACAGGGTGCCATATCCAGTAGCGCGCACAGTCCACAACAGCACACATGAAAAGCGGCAGCTCGAGTTATCACTATCAACTTTCGGCGCTGCCTGTTGA More
Protein seq		MAYDTPALLNRAIDRNHRSFLSAVEGAQLGTFRPRTSREWLRVDPRHVPWLRAAGLLPLCRLVEAAAADDRDPAKRWDADRSLLAALVDRWRPETHTFHLPCGEMAPTLQDVSYLLGLPLAGAPVGPVDGVVGWKEDITARFEQADLLHPDADDYSVRRSLEAYLLWLFGWVMFTSTHGHAVDFRLVHYARSIADGQPQDVPQWSWGSAVLAATYRALCEACTKTDAGAIIAGCPMLLQLWAAERFAIGRPVVDSAPYGVGRSAQWPEDGPTMGTYWCRRGRRYAHVQVRRGYPDFVFEFDRLQPSDVIWEPYTEEAVAARAPLGLSSLCTRDQAYWLTILPMVFDIFVEPHCPQRVMRQFGLRQVFPGNVQPTVPPADHSLTRRGQLADALWAPRVQQYVDDWVLATEEVINELFAHTEENYRDYLRWYLPRTRARVTFTPDAPEPHVAAVTDAYPTHRDRDYFVAADAARDISADITAVQVRLNRGLHLTDVEQRATFDRMQEKMRAVMRVFSCRSAVDVVPPAGPVHPRPRAPTVGAGPRLPSSAPSFGAVRPTAPVSHGPRLPSSAFTGTTGASASSAGAFATSSGAFASSSSHGASIPRPHAGYAAGIFGTGASSSHAGRTGPTSQFYDDDLHGADHQDVLGSSQLGGAPEAHTQEQPEVTPVQAGRVGRAVPPDRLTYSQGHIRAQGRRDRVPYPVARTVHNSTHEKRQLELSLSTFGAAC
Function		Serine/threonine-protein phosphatase 7 long form homolog [UniProtKB/Swiss-Prot:Q9LNG5]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsMH63_11G0349600	OsMH63_11T0349600.1	Chr11	26152964	26156009	-	maker
CDS seq	ATGGCGTACGACACACCGGCGCTGCTGAACCGTGCGATTGACAGGAACCACCGCTCGTTCCTGTCAGCAGTCGAGGGTGCACAGCTCGGCACCTTCCGTCCACGCACGTCGCGCGAGTGGTTGCGTGTCGACCCCCGTCACGTTCCTTGGTTGCGTGCGGCAGGCCTTCTACCACTTTGTAGGCTTGTTGAGGCGGCGGCGGCGGACGACCGTGACCCAGCGAAGCGGTGGGATGCAGACCGGTCACTCCTTGCCGCTCTTGTAGACCGCTGGAGACCTGAGACGCACACGTTCCACCTTCCCTGTGGGGAGATGGCTCCGACACTGCAGGACGTGTCGTACCTGCTCGGGCTACCGCTGGCGGGAGCACCAGTTGGTCCCGTGGACGGTGTTGTTGGGTGGAAGGAGGATATCACTGCGCGCTTCGAGCAGGCGGACCTTCTGCACCCTGACGCTGATGATTACTCGGTCCGACGCTCCCTTGAGGCGTACCTGTTGTGGTTGTTCGGGTGGGTGATGTTCACTAGCACCCACGGGCACGCTGTGGACTTCCGGCTGGTCCACTACGCACGGTCCATCGCGGATGGTCAGCCACAGGACGTGCCGCAGTGGAGCTGGGGTTCTGCCGTGCTAGCAGCCACGTACCGTGCCCTCTGTGAGGCGTGCACGAAGACTGACGCGGGAGCGATCATCGCTGGCTGCCCTATGTTGCTTCAGCTTTGGGCAGCCGAGAGGTTTGCCATAGGGCGACCAGTGGTGGACAGCGCACCCTACGGGGTTGGTCGCAGCGCGCAGTGGCCAGAGGACGGTCCCACGATGGGGACTTACTGGTGTCGACGTGGGCGTCGTTACGCTCACGTCCAGGTGAGACGTGGTTACCCGGACTTCGTGTTCGAGTTTGACCGTCTCCAGCCGAGCGACGTCATCTGGGAGCCGTACACAGAAGAGGCCGTCGCTGCGAGAGCACCGCTAGGACTTTCGTCCTTGTGCACACGCGACCAGGCTTACTGGCTCACCATCCTGCCGATGGTGTTCGACATTTTCGTCGAGCCTCACTGCCCGCAGCGTGTGATGAGACAGTTCGGACTTAGGCAGGTGTTTCCGGGCAACGTGCAGCCGACCGTCCCCCCTGCCGACCACTCGTTGACTCGACGGGGACAGCTAGCAGACGCACTTTGGGCTCCACGTGTACAGCAGTACGTTGACGACTGGGTGTTAGCTACAGAGGAGGTGATCAACGAGCTCTTCGCACACACGGAGGAGAACTACCGTGACTACCTTCGCTGGTACCTTCCTCGCACTCGTGCGCGTGTGACCTTCACTCCAGACGCCCCAGAGCCGCACGTTGCCGCTGTCACGGACGCGTATCCCACGCACCGTGACCGAGACTACTTCGTGGCGGCTGATGCCGCACGGGATATCAGTGCCGATATCACCGCAGTCCAGGTGAGGTTGAACAGAGGTTTGCACTTGACTGACGTTGAGCAGAGGGCGACCTTCGACCGGATGCAGGAGAAGATGCGTGCGGTCATGCGCGTCTTCTCCTGTCGCAGCGCCGTGGACGTCGTACCTCCAGCTGGTCCGGTACACCCACGGCCTCGCGCGCCTACCGTCGGAGCAGGACCTCGTTTGCCTTCGAGCGCCCCTAGCTTCGGAGCAGTGCGACCTACAGCACCGGTTTCGCACGGACCTCGTCTGCCTTCGAGCGCGTTCACAGGCACGACCGGCGCTTCCGCGAGCTCCGCAGGGGCGTTCGCCACCTCTTCGGGCGCGTTCGCCAGCTCTTCCTCTCACGGAGCGTCGATCCCTCGCCCACACGCAGGATATGCAGCCGGGATCTTCGGTACTGGGGCCTCTTCGTCTCACGCCGGTAGGACTGGTCCTACTAGCCAGTTCTACGACGACGACTTGCACGGTGCAGACCACCAGGACGTACTAGGCTCCTCTCAGCTTGGAGGAGCTCCAGAGGCGCACACTCAGGAGCAGCCAGAGGTCACACCTGTACAGGCAGGACGGGTTGGCCGTGCCGTACCCCCGGACCGACTCACGTACTCTCAGGGGCACATTAGGGCGCAGGGTAGGAGGGACAGGGTGCCATATCCAGTAGCGCGCACAGTCCACAACAGCACACATGAAAAGCGGCAGCTCGAGTTATCACTATCAACTTTCGGCGCTGCCTGTTGA More
Protein seq	MAYDTPALLNRAIDRNHRSFLSAVEGAQLGTFRPRTSREWLRVDPRHVPWLRAAGLLPLCRLVEAAAADDRDPAKRWDADRSLLAALVDRWRPETHTFHLPCGEMAPTLQDVSYLLGLPLAGAPVGPVDGVVGWKEDITARFEQADLLHPDADDYSVRRSLEAYLLWLFGWVMFTSTHGHAVDFRLVHYARSIADGQPQDVPQWSWGSAVLAATYRALCEACTKTDAGAIIAGCPMLLQLWAAERFAIGRPVVDSAPYGVGRSAQWPEDGPTMGTYWCRRGRRYAHVQVRRGYPDFVFEFDRLQPSDVIWEPYTEEAVAARAPLGLSSLCTRDQAYWLTILPMVFDIFVEPHCPQRVMRQFGLRQVFPGNVQPTVPPADHSLTRRGQLADALWAPRVQQYVDDWVLATEEVINELFAHTEENYRDYLRWYLPRTRARVTFTPDAPEPHVAAVTDAYPTHRDRDYFVAADAARDISADITAVQVRLNRGLHLTDVEQRATFDRMQEKMRAVMRVFSCRSAVDVVPPAGPVHPRPRAPTVGAGPRLPSSAPSFGAVRPTAPVSHGPRLPSSAFTGTTGASASSAGAFATSSGAFASSSSHGASIPRPHAGYAAGIFGTGASSSHAGRTGPTSQFYDDDLHGADHQDVLGSSQLGGAPEAHTQEQPEVTPVQAGRVGRAVPPDRLTYSQGHIRAQGRRDRVPYPVARTVHNSTHEKRQLELSLSTFGAAC More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0062545	0	0

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_11g0534500	SBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os11g35880	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os11g0534500	SBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_11g0020680	SBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_11g0020740	SBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_11g0020540	SBH	0.0	0.0	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_11g0020080	SBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_11g0020610	SBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_01G0014100	SBH	0.011206	0.092368	0.01061
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_11g0021090	SBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_11G0252900	RBH	0.030952	0	0
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_11g0020890	SBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_11g0021030	SBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_11g0020750	SBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_11g0020340	SBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_11g0020460	SBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_11G015800	SBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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