Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_11G0135100 | OGI:11025660 | 9/16 | Minghui 63 | MH63RS3 | HZAU | Chr11:8893140-8896324 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGCGTTCTGTGTTAGTGAGGCCTGCAACAGATGATGGTTTCTTCAAAGTCACTCTCTAGCTCACAAATATTTGTACTTATCGATAGGAATTTCATAGTAACATGAATTGACATATGCGACCTGGGATACCATATAACTAGGAGGGACCGGGAGTTTGTTTGTAAATGTGTTCTTGCATTGCAGCCTGTGAAAAAGAACTTGACATTTAATAAACATCCTCAAGTATTTTCGTGAAAAAAAAGAATTATTCCTTACATGAATTATGATGTCCATTTCTTAGCTGGATAATACTCAGGTTATTCCACTTGCTAGACTATAGGTTAAAATTACTTCTTTTTCTTTCATTTAAGTTATGCTAATAACTTTTTTTTTGGGGGAAAGAGAATGTATTACTCATTTAAAAAGTCATCACAGCCTAGCTGTAATATGGACTTACAATCCTCTTCCAACCAGAAACCCGACAAGGACTCAACCCTAGCCTTATTAGCAAGAAAATGACTAATCCGATTCTGACTGCGCTGAGCTTTCTTAATGGAGATTTCTCTGTCCCCTTCCATGATGAATTTTGCCTCCTGGACAAGATTGGCTAGTTCTGATCGATCTCTCCCTTTCTCATTCAGCATTTGGATAACCGACATACAGTCGGTTTCTACCACGATCGGTAGCATCGTCCACTGGAACGCTTTCACCAGTCCATCAACGCAAGCACGGAGCTCTGTTTCCAGCGCTCCAGAGCATTTTTGCAGAGGCCTGCAGCAAGCAAAAATGGGTCTGCCGGAACTGTCTCTGAGGATTGCCCCGATTCCTCCATTCTCTGAATTGCTGTCAAAAGAACCATCTATATTGAGCTTCATCCAGCCGTTGCTTGGTCTTTCCCAGCGAGGTTGAGGATTGCATTTGGTCTGAACAGATTGTTTCGCATTGCCCACTTTAAGCACCATCTTGCCTTTTGCCAGATTTGCTACAGGATCCTGACGAAATTGAAACAAAGTATCCACATAGCTCTGAATGAAGCGCTGAGAGGCCTCCACTGGTGGCGCCATCTTGCCATGTGTGATCTCATTTCTCACATGCCAATTTCGCCAGAGAGTCATCAGGGCCAAAGCTCTATCATAATCTGACAAGCCTTCCAAGCAATTAAACAGCCAAGAACGGTCAGATTGGGTAGACTGAATGTCTAGGGAGATTGATCCTGATTTATGCAACAAAGACCACAACTGCTCAGCATGGATGCAACGGCAAAGTGCATGGCCAGCATCCTCCTTTTCTCTATCACAGATGGAGCACATATCCGTTCTCTCCAGGTTCCTTTTCTTCTTATTTACCATAGTCGGCAAACTGTTAGATGCAACCTTCCAAGCGAAAATTCGCACCTTCTGCGGAACATTACATTTCCAAATTAAATCCCAGGCTTTATCCACAGTGTTATTTGAGGAGCTTGAGGCAGCTTCCACATTTGCCAAGTTGGCTGCTAGTGCATAAGCACTCCTAACAGAGAACTGACCCGTCTTGTCTGGGTGCCATGCTAGAAAATCACATCCAATCCTGGGGGATGTGCAGATCTTGAAAATGATATCTGCGTCGACTTTCAGGAAGTAGAGGTTAATCTTCTCAGCATTCCAGGATCCATCTTGATCTAGAAGATCAGAAACCCATTTGAGCCTACAATTCCTTTTCAAGGTAATTGGCCGTCTGGAGTGATCTCGTGGCAACCAAGGGTTACGCCATATTCACACTGCATTGCCATTCCCTATTCTCCAAATTATCCCCTTCTTCAACAGATCCAACCCATGTTCAATCCCTCGCCAAGCAGGAGAGGCATTGGGACCAAAAGTTGTGTCAATCAGAGAACCATGAGGATAGTACTTCGCTTTGAGCACCTTGGCACAAAGGCTGTCTGGGAATTCAATCAACCGCCACGCTTGGCGCGCTAGCAGGGCTTGGTTAAAAAGCCTAATGTCCTTGAACCCTAACCCACCATTCCGTTTAGGCTTTGTCAGGCATTCCCAGGCTCTCCAGTGCGTTTTCCGGCGACCGTTATCCGCACCCCACCAGAAATTTCTTGTAAGCCTTCCTTCTGGTGTAGGGAAGCCTAAATATTTATCTTCAAATTTATCTTTCTCTATTCACGGAGTGTTTCGGATGGATAGATTCTGCACTAAAGGAGTAGCCGCCCCAAGAATGATTGAGCATTTATCTGGGTTGACAAGCTGACCCGTGCCCCGAGCATAGCATTGAAGAACTTCATTCACCACTTCAGCCTGACGGACTTCTGCATTAACACAGAAGAGTATCGTCGGCATACAGTAAGTGGGAAATGCTAGGGGCATTCCGGCAAATCTTGATAGGTGTTAGGATATTTTGTTCCACCTTTTCCTTTAACAAGAGTGATAACCCATCAGCGACGAACAGAAAGAGAAATGGCGACAACGGGTCCCCTTGCCTGAGGCCCCTGCTTGGAATGAAGGAACGGAGAAGGGTTCCATTGAATTTAACAGAATATCTCACCGAAGTCACACATGACATAATCCACCTGACCCATCGGTGAGCAAAACCCAGCCTGTTCATTGCCATCTCCAAAAATTGCCAATCAACTCTGTCGTAAGCCTTTGAGAGATCCAATTTATAGGCACACGCCGCCTTGTCAGCCACTTTGTTTTTCTGAATTGCATGAAAGTATTCAAACGCGAGCAATGCATTGTCAGTTATCATGCGACCCTGAATAGAAGCACTTTGTTCCTCTGAAACTACCTCATCAAGGACTGGACGGAGTCTATTAACCAGACATTTCGAAACCACTTTATACACCACATTGCATAGACTTATTGGCCTATAATCCTTCAACTCTAAGGGTTGTTCAATTTTTGGTATAAGAACAATTGCAGTATTGTTAACACCTTCCGGCATTATACCAGACTGGAAGAAATCACGCACAGCTCGAACTATATATGTCTTAAGCGTTCCCCAATTTCGCTGGTAAAACCTAGCCGGGAAACCGTCCGGGCCAGGAGATTTTAGTGGACCGATTTGGAACAACGCTTGTGCAATCTCTTCATCATTGAAATCAGCACACAGTTTGACATTCATTTCCTCTAAGACTTTCTCCTGTATTAACCGAGTGACCTGTTCAGGATCCAGATTTGGATCAGCCATATACACCTTCTCAAAATATTCAGTCGCCAT
More
|
||||||||||
| CDS seq | ATGGCGACTGAATATTTTGAGAAGGTGTATATGGCTGATCCAAATCTGGATCCTGAACAGGTCACTCGGTTAATACAGGAGAAAGTCTTAGAGGAAATGAATGTCAAACTGTGTGCTGATTTCAATGATGAAGAGATTGCACAAGCGTTGTTCCAAATCGGTCCACTAAAATCTCCTGGCCCGGACGGTTTCCCGGCTAGGTTTTACCAGCGAAATTGGGGAACGCTTAAGACATATATAGTTCGAGCTGTGCGTGATTTCTTCCAGTCTGGTATAATGCCGGAAGGTGTTAACAATACTGCAATTGTTCTTATACCAAAAATTGAACAACCCTTAGAGTTGAAGGATTATAGGCCAATAAGTCTATGCAATGTGGTGTATAAAGTGGTTTCGAAATGTCTGGTTAATAGACTCCGTCCAGTCCTTGATGAGGTAGTTTCAGAGGAACAAAGTGCTTCTATTCAGGGTCGCATGATAACTGACAATGCATTGCTCGCGTTTGAATACTTTCATGCAATTCAGAAAAACAAAGTGGCTGACAAGGCGGCGTGTGCCTATAAATTGGATCTCTCAAAGGCTTACGACAGAGTTGATTGGCAATTTTTGGAGATGGCAATGAACAGGCTGGAAGTCCGTCAGGCTGAAGTGGTGAATGAAGTTCTTCAATGCTATGCTCGGGGCACGGAGAAAGATAAATTTGAAGATAAATATTTAGGCTTCCCTACACCAGAAGGAAGGCTTACAAGAAATTTCTGGTGGGGTGCGGATAACGGTCGCCGGAAAACGCACTGGAGAGCCTGGGAATGCCTGACAAAGCCTAAACGGAATGGTGGGTTAGGGTTCAAGGACATTAGGCTTTTTAACCAAGCCCTGCTAGCGCGCCAAGCGTGGCGGTTGATTGAATTCCCAGACAGCCTTTGTGCCAAGGTGCTCAAAGCGAAGTACTATCCTCATGGTTCTCTGATTGACACAACTTTTGGTCCCAATGCCTCTCCTGCTTGGCGAGGGATTGAACATGGGTTGGATCTGTTGAAGAAGGGGATAATTTGGAGAATAGGGAATGGCAATGCAGTGCTCAAATGGGTTTCTGATCTTCTAGATCAAGATGGATCCTGGAATGCTGAGAAGATTAACCTCTACTTCCTGAAAGTCGACGCAGATATCATTTTCAAGATCTGCACATCCCCCAGGATTGGATGTGATTTTCTAGCATGGCACCCAGACAAGACGGGTCAGTTCTCTGTTAGGAGTGCTTATGCACTAGCAGCCAACTTGGCAAATGTGGAAGCTGCCTCAAGCTCCTCAAATAACACTGTGGATAAAGCCTGGGATTTAATTTGGAAATGTAATGTTCCGCAGAAGGTGCGAATTTTCGCTTGGAAGGTTGCATCTAACAGTTTGCCGACTATGGTAAATAAGAAGAAAAGGAACCTGGAGAGAACGGATATGTGCTCCATCTGTGATAGAGAAAAGGAGGATGCTGGCCATGCACTTTGCCGTTGCATCCATGCTGAGCAGTTGTGGTCTTTGTTGCATAAATCAGGATCAATCTCCCTAGACATTCAGTCTACCCAATCTGACCGTTCTTGGCTGTTTAATTGCTTGGAAGGCTTGTCAGATTATGATAGAGCTTTGGCCCTGATGACTCTCTGGCGAAATTGGCATGTGAGAAATGAGATCACACATGGCAAGATGGCGCCACCAGTGGAGGCCTCTCAGCGCTTCATTCAGAGCTATGTGGATACTTTGTTTCAATTTCGTCAGGATCCTGTAGCAAATCTGGCAAAAGGCAAGATGGTGCTTAAAGTGGGCAATGCGAAACAATCTGTTCAGACCAAATGCAATCCTCAACCTCGCTGGGAAAGACCAAGCAACGGCTGGATGAAGCTCAATATAGATGGTTCTTTTGACAGCAATTCAGAGAATGGAGGAATCGGGGCAATCCTCAGAGACAGTTCCGGCAGACCCATTTTTGCTTGCTGCAGGCCTCTGCAAAAATGCTCTGGAGCGCTGGAAACAGAGCTCCGTGCTTGCGTTGATGGACTGGTGAAAGCGTTCCAGTGGACGATGCTACCGATCGTGGTAGAAACCGACTGTATGTCGGTTATCCAAATGCTGAATGAGAAAGGGAGAGATCGATCAGAACTAGCCAATCTTGTCCAGGAGGCAAAATTCATCATGGAAGGGGACAGAGAAATCTCCATTAAGAAAGCTCAGCGCAGTCAGAATCGGATTAGTCATTTTCTTGCTAATAAGGCTAGGGTTGAGTCCTTGTCGGGTTTCTGGTTGGAAGAGGATTGCCTCACTAACACAGAACGCTAG
More
|
||||||||||
| Protein seq | MATEYFEKVYMADPNLDPEQVTRLIQEKVLEEMNVKLCADFNDEEIAQALFQIGPLKSPGPDGFPARFYQRNWGTLKTYIVRAVRDFFQSGIMPEGVNNTAIVLIPKIEQPLELKDYRPISLCNVVYKVVSKCLVNRLRPVLDEVVSEEQSASIQGRMITDNALLAFEYFHAIQKNKVADKAACAYKLDLSKAYDRVDWQFLEMAMNRLEVRQAEVVNEVLQCYARGTEKDKFEDKYLGFPTPEGRLTRNFWWGADNGRRKTHWRAWECLTKPKRNGGLGFKDIRLFNQALLARQAWRLIEFPDSLCAKVLKAKYYPHGSLIDTTFGPNASPAWRGIEHGLDLLKKGIIWRIGNGNAVLKWVSDLLDQDGSWNAEKINLYFLKVDADIIFKICTSPRIGCDFLAWHPDKTGQFSVRSAYALAANLANVEAASSSSNNTVDKAWDLIWKCNVPQKVRIFAWKVASNSLPTMVNKKKRNLERTDMCSICDREKEDAGHALCRCIHAEQLWSLLHKSGSISLDIQSTQSDRSWLFNCLEGLSDYDRALALMTLWRNWHVRNEITHGKMAPPVEASQRFIQSYVDTLFQFRQDPVANLAKGKMVLKVGNAKQSVQTKCNPQPRWERPSNGWMKLNIDGSFDSNSENGGIGAILRDSSGRPIFACCRPLQKCSGALETELRACVDGLVKAFQWTMLPIVVETDCMSVIQMLNEKGRDRSELANLVQEAKFIMEGDREISIKKAQRSQNRISHFLANKARVESLSGFWLEEDCLTNTER |
||||||||||
| Function | Putative ribonuclease H protein At1g65750 [UniProtKB/Swiss-Prot:P0C2F6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_11G0135100 | OsMH63_11T0135100.1 | Chr11 | 8893140 | 8896324 | - | maker | ||
| CDS seq | ATGGCGACTGAATATTTTGAGAAGGTGTATATGGCTGATCCAAATCTGGATCCTGAACAGGTCACTCGGTTAATACAGGAGAAAGTCTTAGAGGAAATGAATGTCAAACTGTGTGCTGATTTCAATGATGAAGAGATTGCACAAGCGTTGTTCCAAATCGGTCCACTAAAATCTCCTGGCCCGGACGGTTTCCCGGCTAGGTTTTACCAGCGAAATTGGGGAACGCTTAAGACATATATAGTTCGAGCTGTGCGTGATTTCTTCCAGTCTGGTATAATGCCGGAAGGTGTTAACAATACTGCAATTGTTCTTATACCAAAAATTGAACAACCCTTAGAGTTGAAGGATTATAGGCCAATAAGTCTATGCAATGTGGTGTATAAAGTGGTTTCGAAATGTCTGGTTAATAGACTCCGTCCAGTCCTTGATGAGGTAGTTTCAGAGGAACAAAGTGCTTCTATTCAGGGTCGCATGATAACTGACAATGCATTGCTCGCGTTTGAATACTTTCATGCAATTCAGAAAAACAAAGTGGCTGACAAGGCGGCGTGTGCCTATAAATTGGATCTCTCAAAGGCTTACGACAGAGTTGATTGGCAATTTTTGGAGATGGCAATGAACAGGCTGGAAGTCCGTCAGGCTGAAGTGGTGAATGAAGTTCTTCAATGCTATGCTCGGGGCACGGAGAAAGATAAATTTGAAGATAAATATTTAGGCTTCCCTACACCAGAAGGAAGGCTTACAAGAAATTTCTGGTGGGGTGCGGATAACGGTCGCCGGAAAACGCACTGGAGAGCCTGGGAATGCCTGACAAAGCCTAAACGGAATGGTGGGTTAGGGTTCAAGGACATTAGGCTTTTTAACCAAGCCCTGCTAGCGCGCCAAGCGTGGCGGTTGATTGAATTCCCAGACAGCCTTTGTGCCAAGGTGCTCAAAGCGAAGTACTATCCTCATGGTTCTCTGATTGACACAACTTTTGGTCCCAATGCCTCTCCTGCTTGGCGAGGGATTGAACATGGGTTGGATCTGTTGAAGAAGGGGATAATTTGGAGAATAGGGAATGGCAATGCAGTGCTCAAATGGGTTTCTGATCTTCTAGATCAAGATGGATCCTGGAATGCTGAGAAGATTAACCTCTACTTCCTGAAAGTCGACGCAGATATCATTTTCAAGATCTGCACATCCCCCAGGATTGGATGTGATTTTCTAGCATGGCACCCAGACAAGACGGGTCAGTTCTCTGTTAGGAGTGCTTATGCACTAGCAGCCAACTTGGCAAATGTGGAAGCTGCCTCAAGCTCCTCAAATAACACTGTGGATAAAGCCTGGGATTTAATTTGGAAATGTAATGTTCCGCAGAAGGTGCGAATTTTCGCTTGGAAGGTTGCATCTAACAGTTTGCCGACTATGGTAAATAAGAAGAAAAGGAACCTGGAGAGAACGGATATGTGCTCCATCTGTGATAGAGAAAAGGAGGATGCTGGCCATGCACTTTGCCGTTGCATCCATGCTGAGCAGTTGTGGTCTTTGTTGCATAAATCAGGATCAATCTCCCTAGACATTCAGTCTACCCAATCTGACCGTTCTTGGCTGTTTAATTGCTTGGAAGGCTTGTCAGATTATGATAGAGCTTTGGCCCTGATGACTCTCTGGCGAAATTGGCATGTGAGAAATGAGATCACACATGGCAAGATGGCGCCACCAGTGGAGGCCTCTCAGCGCTTCATTCAGAGCTATGTGGATACTTTGTTTCAATTTCGTCAGGATCCTGTAGCAAATCTGGCAAAAGGCAAGATGGTGCTTAAAGTGGGCAATGCGAAACAATCTGTTCAGACCAAATGCAATCCTCAACCTCGCTGGGAAAGACCAAGCAACGGCTGGATGAAGCTCAATATAGATGGTTCTTTTGACAGCAATTCAGAGAATGGAGGAATCGGGGCAATCCTCAGAGACAGTTCCGGCAGACCCATTTTTGCTTGCTGCAGGCCTCTGCAAAAATGCTCTGGAGCGCTGGAAACAGAGCTCCGTGCTTGCGTTGATGGACTGGTGAAAGCGTTCCAGTGGACGATGCTACCGATCGTGGTAGAAACCGACTGTATGTCGGTTATCCAAATGCTGAATGAGAAAGGGAGAGATCGATCAGAACTAGCCAATCTTGTCCAGGAGGCAAAATTCATCATGGAAGGGGACAGAGAAATCTCCATTAAGAAAGCTCAGCGCAGTCAGAATCGGATTAGTCATTTTCTTGCTAATAAGGCTAGGGTTGAGTCCTTGTCGGGTTTCTGGTTGGAAGAGGATTGCCTCACTAACACAGAACGCTAG
More
|
|||||||
| Protein seq | MATEYFEKVYMADPNLDPEQVTRLIQEKVLEEMNVKLCADFNDEEIAQALFQIGPLKSPGPDGFPARFYQRNWGTLKTYIVRAVRDFFQSGIMPEGVNNTAIVLIPKIEQPLELKDYRPISLCNVVYKVVSKCLVNRLRPVLDEVVSEEQSASIQGRMITDNALLAFEYFHAIQKNKVADKAACAYKLDLSKAYDRVDWQFLEMAMNRLEVRQAEVVNEVLQCYARGTEKDKFEDKYLGFPTPEGRLTRNFWWGADNGRRKTHWRAWECLTKPKRNGGLGFKDIRLFNQALLARQAWRLIEFPDSLCAKVLKAKYYPHGSLIDTTFGPNASPAWRGIEHGLDLLKKGIIWRIGNGNAVLKWVSDLLDQDGSWNAEKINLYFLKVDADIIFKICTSPRIGCDFLAWHPDKTGQFSVRSAYALAANLANVEAASSSSNNTVDKAWDLIWKCNVPQKVRIFAWKVASNSLPTMVNKKKRNLERTDMCSICDREKEDAGHALCRCIHAEQLWSLLHKSGSISLDIQSTQSDRSWLFNCLEGLSDYDRALALMTLWRNWHVRNEITHGKMAPPVEASQRFIQSYVDTLFQFRQDPVANLAKGKMVLKVGNAKQSVQTKCNPQPRWERPSNGWMKLNIDGSFDSNSENGGIGAILRDSSGRPIFACCRPLQKCSGALETELRACVDGLVKAFQWTMLPIVVETDCMSVIQMLNEKGRDRSELANLVQEAKFIMEGDREISIKKAQRSQNRISHFLANKARVESLSGFWLEEDCLTNTER
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0.0693005 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g16248 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0005890 | RBH | 0.0 | 0.0 | 0.319360 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0005940 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0138900 | RBH | 0 | 0.0074045 | 0.2757115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0009650 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
