Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsMH63_11G0064500		OGI:01039680 \| 16/16			Minghui 63 \| MH63RS3 \| HZAU			Chr11:3880908-3884208		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		MSL02, OsMSL02, MSL2
DNA seq		GTCTCCTCGCCCCGTCTGTGTGTTGATGATTTTGCAAAAAAAACCCGTGCACGCGCAGAGACGGGCAGCCCGGCGCCTCCCGACGCGACGAGTTCATCCCGTTCTCCCAGGTGGAGTCGACGCGAGCCCACGCGCTGTAGAGCGCCGTCGTCCCCAGGCGACGGGCGAACGGATCCCGCGTGCGGCCGCGCTCGCCCACAAATTTCCCAGGCAACCACGCGCGCTGTTCTCCCGCGCTCTGCTCGCGACTTGCCCCAAATTTCTTCGCCCGCCCATCTGCGCGGCCGCCATCTGCTCGCCCCCCATCTGGTATTCTCGCCGGAGTTGGTGCGGCGGGATGTCCACGCCCGGCGCAGCTTGGAGTAGGAATGGATCGAGGACATTGGATGCGGCGGCGACGGCCCCAGGCCGAACCCTAGGTGTCGGGGCGGCGGCGGCGGCTCCCTCATTCGGTCGGGGTTCTTTTGGTCACGCTGTCGGGGTACCACCGCCGCCCCGTTCTCGCGGACGCGGTCGCGGGTCAGTAGCGGCAGCGACGACCGTCCCGGCTTTCTCCATTGATGGTTCTGTCGGAGGTGACTTCACCAGCTCAATTGGTCCTCATGCATCATCTCAACCTTGGTTTGATGCGGCCGGCGGTGATCCCTCATCTCCTGGATCATGGTAAATCCTTGTTTCATTGCTGTTTTGTAGTTGATATTAGGCATTGTGAATCTAGATAATTTTGTAGTTGATATTAAGCATTGTGAATCTGTAAATCCCATACTGTTGTACCTGGATCCCTTTTATACCATATTTTAATAATGTCTAGAAGTGATTCATTGAACTCTTTGTTAGATATTCAACTGATAAATGATTATCATAAAAATGAGCCCATCAAGCTTCTGTGTCCAACATATTGTACTCTTTGTTAGTTGTTCTTAAAGAGTAAAAATACCCATCAAGCTTCTGTGTCCAACTGATCATTTTAAGCTAATTTCATATTTTAAGCTAATTTCATGTTAAGCTTATGTGCCGAAATTATTTTAAGCTAATTTTACCTTCTAACCCTTCATAAATACAGCCACAATAGTACTACTACTGCATCTGAATTTTATTTGTAGATGGACCATGGAAAATTTCATGTTAATTGGAATTTCCTGCAGGGACCAAGATGTACGTCCACCTGGTGGTTTCATGAGCTATTTTGGAAATGAAGCACAGAACTCTCATTTGGTTGGTGCAGTTATTCACATGAGTCCTCTGAATCAGGCACACAATGGTAGTTCACCGCCCGAAGTGGAAATATTACATGGCAATGACAGTGTTAGAACCGAGAAGAGGATCATGTGGACTCCGGACGAGGATGTTAGAGTGATGAGCGCTTGGTTAGAACATTCAACCGACTCTACCTGTGGTGCGGATAAGGGTGGTGTCCAATATTGGGGTGAGGTTGTCGAAACGTACAACAAAACTACCCCTCCACTTCGAAGAAGAAATGCGAAGCAATGCAAGGATAGATGGCACAAGATTAACAAATGGACAGACCTCTTTGAATGTGCTTACGCTAAGGCTCGTAGAGTATTTACAAGTGGATATTCGGCTGAAATGTGGCTTGATGCAGCACACAAGTTCTATGTGGATGACAACAAAGAATGCAAAGACGTGGTTGGACCTTATATGCTGACAGAGGTTTGGAAAATTTGCCGAGATGTGCCAAAGTGGAAAACATATAATGAAAACCTGAAGAATGCACATAAAAGGAAAGCATTCCATCTGGAAGGAGAATATGAGGAAAATGAGGACACTTGTGATGAGATGCCACAACGACCAATTGGTCGGAAGGCAGCTAAAAAGGAAGCTCTAGCTGCTAAAAATGGCAAGTTAAAGGGTTCCAGCAGTAGTGATGATGGTCACTCAAAGGATTCTCCTATTGAGCTAGACAAATTTGATAGATACAGTAAATTTCAGGAGGCAAACAATGAGAAGCGTATGAAGCTATTGGACAGGCAAGAGAAGATAGCTTCTGAGAAGCTAGAGGCCACAAAAATTGCCCACCTTACAGCACAATAGTACAAAGAAGGAAAGAAGCTTGATAAAGAGACAAAGATGATGGAGACTTATAACAACCTCGTTTCACAGGATACAAGTTCAATGTCCGATGAGGAAAAGGCACAACGAGCTATGATGATGAAGTGTCTTATGAAGGCCCTTTTTCCTGAAACTGCTTGAGAAGGTATTTCTTATCTGTGTAGTTCTGAAATTTAGCACTTGTAGTTCTGAAATTTAGCACTTGTAGTAGCCATATATGAACCTCAGCCAGTTCTGGTATGAAGATATGAAGTTTCTGCTTATTTAGTATTCTGTGACAAACTTGTTAAATTCTGAAATTCTGTGACAAACTTGTTAAATTTAGCACTTGTAGTAGCCATATATGAACCTCAGCCATATATGTTCAGTTTTCTGCTCATTCATGCTTTTTTTTTCTGAAATTCAGTTTTCTGCATATTCAGTAGCCATATATGAACCTCAGCCATATATGTTCAGTATCAATGTTCAGTATACTGGTAGTTTTGCCGTGTTTTCCCTTACTCAGTACCGAGCCATATATGAACCTCAGCCAAATTCAGTTTTCTGCTTATTCAGTACCCATATATGTTCAGTTCTCCCTTACTCAGTTTTGCTCTATAGGCCATAATGTAAATTCTGAAATTATGGTATCCTGGTAGTTTCAGTTTCAGGTATCCTGGTAATTAAATTCTGAAATCCAATTAAATGTGAAACTGCGCATGATTTTCTAAATGGTAATGACAGTGCTTTGTGAACTTGACACTGTGTGTGTGAACTGAAACTGATCACAGAGGATGATATTTTTAGTGTGAACTGAAACTGAAACTGTGTGTGTGAACTGAAACTGTGCTTTGTGAACTTGAATGTGAACTGAAACTGCGCATGATTTTCTGAATTGTGTGTGTGAACTTGAATGTGAATGGAATGGTTATCTTTTTAGTGGTGCCGGAGTTGATCAGTTTTCTGAACTTCAATGCTGAACTTGAATGTAAATGTGAATGGTCATCTTTTAAGTGGTGCTGGAGTTGATCAGTTGATCAGTTTAGTCGCTGTAGTGCGACGTTGATCTTTTTAGTAGCTTGAATGTGCCACTTGAATGTAAATGTGAATGCTGAATTTGAATGTAGCTTGAATGCTAGTAGTTGATCAGTTTAGTGGTGCCGATCAGTTTTTGTAAATATGAATGGTCATCTTTTTTTATTCTATAAAACATCGTTGTTCTGTGCGCTCCTCTGTACACTACTCCACCATC More
CDS seq		ATGATTTTGCAAAAAAAACCCGTGCACGCGCAGAGACGGGCAGCCCGGCGCCTCCCGACGCGACGAGTTCATCCCGTTCTCCCAGGTGGAGTCGACGCGAGCCCACGCGCTGTAGAGCGCCGTCGTCCCCAGGCGACGGGCGAACGGATCCCGCGTGCGGCCGCGCTCGCCCACAAATTTCCCAGGCAACCACGCGCGCTGTTCTCCCGCGCTCTGCTCGCGACTTGCCCCAAATTTCTTCGCCCGCCCATCTGCGCGGCCGCCATCTGCTCGCCCCCCATCTGGTATTCTCGCCGGAGTTGGTGCGGCGGGATGTCCACGCCCGGCGCAGCTTGGAGTAGGAATGGATCGAGGACATTGGATGCGGCGGCGACGGCCCCAGGCCGAACCCTAGGTGTCGGGGCGGCGGCGGCGGCTCCCTCATTCGGTCGGGGTTCTTTTGGTCACGCTGTCGGGGTACCACCGCCGCCCCGTTCTCGCGGACGCGGTCGCGGGTCAGTAGCGGCAGCGACGACCGTCCCGGCTTTCTCCATTGATGGTTCTGTCGGAGGTGACTTCACCAGCTCAATTGGTCCTCATGCATCATCTCAACCTTGGTTTGATGCGGCCGGCGGTGATCCCTCATCTCCTGGATCATGGGACCAAGATGTACGTCCACCTGGTGGTTTCATGAGCTATTTTGGAAATGAAGCACAGAACTCTCATTTGGTTGGTGCAGTTATTCACATGAGTCCTCTGAATCAGGCACACAATGGTAGTTCACCGCCCGAAGTGGAAATATTACATGGCAATGACAGTGTTAGAACCGAGAAGAGGATCATGTGGACTCCGGACGAGGATGTTAGAGTGATGAGCGCTTGGTTAGAACATTCAACCGACTCTACCTGTGGTGCGGATAAGGGTGGTGTCCAATATTGGGGTGAGGTTGTCGAAACGTACAACAAAACTACCCCTCCACTTCGAAGAAGAAATGCGAAGCAATGCAAGGATAGATGGCACAAGATTAACAAATGGACAGACCTCTTTGAATGTGCTTACGCTAAGGCTCGTAGAGTATTTACAAGTGGATATTCGGCTGAAATGTGGCTTGATGCAGCACACAAGTTCTATGTGGATGACAACAAAGAATGCAAAGACGTGGTTGGACCTTATATGCTGACAGAGGTTTGGAAAATTTGCCGAGATGTGCCAAAGTGGAAAACATATAATGAAAACCTGAAGAATGCACATAAAAGGAAAGCATTCCATCTGGAAGGAGAATATGAGGAAAATGAGGACACTTGTGATGAGATGCCACAACGACCAATTGGTCGGAAGGCAGCTAAAAAGGAAGCTCTAGCTGCTAAAAATGGCAAGTTAAAGGGTTCCAGCAGTAGTGATGATGGTCACTCAAAGGATTCTCCTATTGAGCTAGACAAATTTGATAGATACAGTAAATTTCAGGAGGCAAACAATGAGAAGCGTATGAAGCTATTGGACAGGCAAGAGAAGATAGCTTCTGAGAAGCTAGAGGCCACAAAAATTGCCCACCTTACAGCACAATAG More
Protein seq		MILQKKPVHAQRRAARRLPTRRVHPVLPGGVDASPRAVERRRPQATGERIPRAAALAHKFPRQPRALFSRALLATCPKFLRPPICAAAICSPPIWYSRRSWCGGMSTPGAAWSRNGSRTLDAAATAPGRTLGVGAAAAAPSFGRGSFGHAVGVPPPPRSRGRGRGSVAAATTVPAFSIDGSVGGDFTSSIGPHASSQPWFDAAGGDPSSPGSWDQDVRPPGGFMSYFGNEAQNSHLVGAVIHMSPLNQAHNGSSPPEVEILHGNDSVRTEKRIMWTPDEDVRVMSAWLEHSTDSTCGADKGGVQYWGEVVETYNKTTPPLRRRNAKQCKDRWHKINKWTDLFECAYAKARRVFTSGYSAEMWLDAAHKFYVDDNKECKDVVGPYMLTEVWKICRDVPKWKTYNENLKNAHKRKAFHLEGEYEENEDTCDEMPQRPIGRKAAKKEALAAKNGKLKGSSSSDDGHSKDSPIELDKFDRYSKFQEANNEKRMKLLDRQEKIASEKLEATKIAHLTAQ
Function		-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsMH63_11G0064500	OsMH63_11T0064500.1	Chr11	3880908	3883343	+	maker
CDS seq	ATGATTTTGCAAAAAAAACCCGTGCACGCGCAGAGACGGGCAGCCCGGCGCCTCCCGACGCGACGAGTTCATCCCGTTCTCCCAGGTGGAGTCGACGCGAGCCCACGCGCTGTAGAGCGCCGTCGTCCCCAGGCGACGGGCGAACGGATCCCGCGTGCGGCCGCGCTCGCCCACAAATTTCCCAGGCAACCACGCGCGCTGTTCTCCCGCGCTCTGCTCGCGACTTGCCCCAAATTTCTTCGCCCGCCCATCTGCGCGGCCGCCATCTGCTCGCCCCCCATCTGGTATTCTCGCCGGAGTTGGTGCGGCGGGATGTCCACGCCCGGCGCAGCTTGGAGTAGGAATGGATCGAGGACATTGGATGCGGCGGCGACGGCCCCAGGCCGAACCCTAGGTGTCGGGGCGGCGGCGGCGGCTCCCTCATTCGGTCGGGGTTCTTTTGGTCACGCTGTCGGGGTACCACCGCCGCCCCGTTCTCGCGGACGCGGTCGCGGGTCAGTAGCGGCAGCGACGACCGTCCCGGCTTTCTCCATTGATGGTTCTGTCGGAGGTGACTTCACCAGCTCAATTGGTCCTCATGCATCATCTCAACCTTGGTTTGATGCGGCCGGCGGTGATCCCTCATCTCCTGGATCATGGGACCAAGATGTACGTCCACCTGGTGGTTTCATGAGCTATTTTGGAAATGAAGCACAGAACTCTCATTTGGTTGGTGCAGTTATTCACATGAGTCCTCTGAATCAGGCACACAATGGTAGTTCACCGCCCGAAGTGGAAATATTACATGGCAATGACAGTGTTAGAACCGAGAAGAGGATCATGTGGACTCCGGACGAGGATGTTAGAGTGATGAGCGCTTGGTTAGAACATTCAACCGACTCTACCTGTGGTGCGGATAAGGGTGGTGTCCAATATTGGGGTGAGGTTGTCGAAACGTACAACAAAACTACCCCTCCACTTCGAAGAAGAAATGCGAAGCAATGCAAGGATAGATGGCACAAGATTAACAAATGGACAGACCTCTTTGAATGTGCTTACGCTAAGGCTCGTAGAGTATTTACAAGTGGATATTCGGCTGAAATGTGGCTTGATGCAGCACACAAGTTCTATGTGGATGACAACAAAGAATGCAAAGACGTGGTTGGACCTTATATGCTGACAGAGGTTTGGAAAATTTGCCGAGATGTGCCAAAGTGGAAAACATATAATGAAAACCTGAAGAATGCACATAAAAGGAAAGCATTCCATCTGGAAGGAGAATATGAGGAAAATGAGGACACTTGTGATGAGATGCCACAACGACCAATTGGTCGGAAGGCAGCTAAAAAGGAAGCTCTAGCTGCTAAAAATGGCAAGTTAAAGGGTTCCAGCAGTAGTGATGATGGTCACTCAAAGGATTCTCCTATTGAGCTAGACAAATTTGATAGATACAGTAAATTTCAGGAGGCAAACAATGAGAAGCGTATGAAGCTATTGGACAGGCAAGAGAAGATAGCTTCTGAGAAGCTAGAGGCCACAAAAATTGCCCACCTTACAGCACAATAG More
Protein seq	MILQKKPVHAQRRAARRLPTRRVHPVLPGGVDASPRAVERRRPQATGERIPRAAALAHKFPRQPRALFSRALLATCPKFLRPPICAAAICSPPIWYSRRSWCGGMSTPGAAWSRNGSRTLDAAATAPGRTLGVGAAAAAPSFGRGSFGHAVGVPPPPRSRGRGRGSVAAATTVPAFSIDGSVGGDFTSSIGPHASSQPWFDAAGGDPSSPGSWDQDVRPPGGFMSYFGNEAQNSHLVGAVIHMSPLNQAHNGSSPPEVEILHGNDSVRTEKRIMWTPDEDVRVMSAWLEHSTDSTCGADKGGVQYWGEVVETYNKTTPPLRRRNAKQCKDRWHKINKWTDLFECAYAKARRVFTSGYSAEMWLDAAHKFYVDDNKECKDVVGPYMLTEVWKICRDVPKWKTYNENLKNAHKRKAFHLEGEYEENEDTCDEMPQRPIGRKAAKKEALAAKNGKLKGSSSSDDGHSKDSPIELDKFDRYSKFQEANNEKRMKLLDRQEKIASEKLEATKIAHLTAQ More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsMH63_11G0064500	OsMH63_11T0064500.2	Chr11	3880908	3884208	+	maker
CDS seq	ATGATTTTGCAAAAAAAACCCGTGCACGCGCAGAGACGGGCAGCCCGGCGCCTCCCGACGCGACGAGTTCATCCCGTTCTCCCAGGTGGAGTCGACGCGAGCCCACGCGCTGTAGAGCGCCGTCGTCCCCAGGCGACGGGCGAACGGATCCCGCGTGCGGCCGCGCTCGCCCACAAATTTCCCAGGCAACCACGCGCGCTGTTCTCCCGCGCTCTGCTCGCGACTTGCCCCAAATTTCTTCGCCCGCCCATCTGCGCGGCCGCCATCTGCTCGCCCCCCATCTGGTATTCTCGCCGGAGTTGGTGCGGCGGGATGTCCACGCCCGGCGCAGCTTGGAGTAGGAATGGATCGAGGACATTGGATGCGGCGGCGACGGCCCCAGGCCGAACCCTAGGTGTCGGGGCGGCGGCGGCGGCTCCCTCATTCGGTCGGGGTTCTTTTGGTCACGCTGTCGGGGTACCACCGCCGCCCCGTTCTCGCGGACGCGGTCGCGGGTCAGTAGCGGCAGCGACGACCGTCCCGGCTTTCTCCATTGATGGTTCTGTCGGAGGTGACTTCACCAGCTCAATTGGTCCTCATGCATCATCTCAACCTTGGTTTGATGCGGCCGGCGGTGATCCCTCATCTCCTGGATCATGGGACCAAGATGTACGTCCACCTGGTGGTTTCATGAGCTATTTTGGAAATGAAGCACAGAACTCTCATTTGGTTGGTGCAGTTATTCACATGAGTCCTCTGAATCAGGCACACAATGGTAGTTCACCGCCCGAAGTGGAAATATTACATGGCAATGACAGTGTTAGAACCGAGAAGAGGATCATGTGGACTCCGGACGAGGATGTTAGAGTGATGAGCGCTTGGTTAGAACATTCAACCGACTCTACCTGTGGTGCGGATAAGGGTGGTGTCCAATATTGGGGTGAGGTTGTCGAAACGTACAACAAAACTACCCCTCCACTTCGAAGAAGAAATGCGAAGCAATGCAAGGATAGATGGCACAAGATTAACAAATGGACAGACCTCTTTGAATGTGCTTACGCTAAGGCTCGTAGAGTATTTACAAGTGGATATTCGGCTGAAATGTGGCTTGATGCAGCACACAAGTTCTATGTGGATGACAACAAAGAATGCAAAGACGTGGTTGGACCTTATATGCTGACAGAGGTTTGGAAAATTTGCCGAGATGTGCCAAAGTGGAAAACATATAATGAAAACCTGAAGAATGCACATAAAAGGAAAGCATTCCATCTGGAAGGAGAATATGAGGAAAATGAGGACACTTGTGATGAGATGCCACAACGACCAATTGGTCGGAAGGCAGCTAAAAAGGAAGCTCTAGCTGCTAAAAATGGCAAGTTAAAGGGTTCCAGCAGTAGTGATGATGGTCACTCAAAGGATTCTCCTATTGAGCTAGACAAATTTGATAGATACAGTAAATTTCAGGAGGCAAACAATGAGAAGCGTATGAAGCTATTGGACAGGCAAGAGAAGATAGCTTCTGAGAAGCTAGAGGCCACAAAAATTGCCCACCTTACAGCACAATAG More
Protein seq	MILQKKPVHAQRRAARRLPTRRVHPVLPGGVDASPRAVERRRPQATGERIPRAAALAHKFPRQPRALFSRALLATCPKFLRPPICAAAICSPPIWYSRRSWCGGMSTPGAAWSRNGSRTLDAAATAPGRTLGVGAAAAAPSFGRGSFGHAVGVPPPPRSRGRGRGSVAAATTVPAFSIDGSVGGDFTSSIGPHASSQPWFDAAGGDPSSPGSWDQDVRPPGGFMSYFGNEAQNSHLVGAVIHMSPLNQAHNGSSPPEVEILHGNDSVRTEKRIMWTPDEDVRVMSAWLEHSTDSTCGADKGGVQYWGEVVETYNKTTPPLRRRNAKQCKDRWHKINKWTDLFECAYAKARRVFTSGYSAEMWLDAAHKFYVDDNKECKDVVGPYMLTEVWKICRDVPKWKTYNENLKNAHKRKAFHLEGEYEENEDTCDEMPQRPIGRKAAKKEALAAKNGKLKGSSSSDDGHSKDSPIELDKFDRYSKFQEANNEKRMKLLDRQEKIASEKLEATKIAHLTAQ More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0	0	0.00609

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_01g0373400	SBH	0.928479	0.000000	0.000000
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os01g27590	SBH	0.616357	0.000000	0.000000
Nipponbare \| IRGSP 1.0 \| RAP-db	Os01g0373400	SBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_11g0005240	RBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_01g0017140	SBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_11g0021180	SBH	0.391963	0.0	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_11g0005110	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_11g0005030	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_11G0249000	RBH	0	0	0
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_11g0005110	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_11G0064900	RBH	0	0	0
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_11g0005060	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_11g0005140	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_11g0005150	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_11g0005150	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_11g0005130	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_11G005190	RBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_11g0005080	RBH	0.0	0.0	0.0

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.