Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_11G0000800 | OGI:11000110 | 5/16 | Minghui 63 | MH63RS3 | HZAU | Chr11:82680-86714 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGAAGTCGTCGCAGCTCCTCCCCTATCAAGTCGTTACCCTTCTCATCGGGCTCAGCCGAGCCGCTATCCTCCCCACCGCTGACCCCCATCACCGCCACTACAACCCCCGCCGCCACCGGTGGGGCGGGAGGGAGGAGAAGAGGGAAGCGGTGGTGGCTGGAGAGGAGGAGGCGGTGGGTGGGTCTGGAGAGGAGGTAGCTAGGTGGCAGTAGGTGGTGGTTTTAAATGTCTTCAATTTTTTTAGTGGGGTGATGTTTTTCGCTGGTACCTCTTCAGCAGTTGTCAATGAAAATTGATTTTCGCTGGCTGTCACTTAAGAGGTCCGTTTGTAAAAAAATTGCTATTCACACAAAAGCAAACTCACACAGTGAGTTTAGAACCAAAGTAACAAAACATTAAGCAAACACAAACCAACAGACACCAACACAAAATAGAGATCCCATAACTGCTGAATTCTATCTGCGAACCTCCACCCAAAGTTAGGGAAGAGCTGCATAATCGTTGACTCAATTTTATGACATGCATCATTAATTAGCTTGATATCTTATTTACACCTTTGTATTTGAGCCCAACACCAGAGCCAATACGTTATCCTGAAAAGTACTTGCAAATAAGATTTTGATGGTGATTTATCAAGAATAATATCATTCCTACTAAACCAAAGAGCTATAGATTTTGATGGTGATTTATCAAGAATAATATCATTCCTACTAAACCAAAGAGCCTAACATATAGCGGATGCTCCAACAAGAATAAGTTTCATAATTTTTTTATCAACACCCAACACCCACTAGCCAATTCCCAAACATATATATGAGATGCTACATTTCATGCATGCTCTTTCATCCCTGGAGCTCTTGTTGATCTTATGGCATGATCGAGTCGTTACAAACTCAAATTAATACAACAAATATGCAGTGAAGTTTGGGGTAATTACTTGCAGTGACGTGTGTACAACTAGCTGTACAGTAACTGCACAAGAATGGAACATGTGGTACGTTTTAGCAAGCACAACTGTTAATTAGCTGCTTACACCTGTAATGCCAAATGGAGCCAGCTAGTCTCTCTCTCTCATCATATATACTTATAGGAGTATATGCATGGTGGGCTGGCAACAGACTATCGAATTCGAGCTCGGCAACGTGTACGTGGCTAAAAAACAAACAAGATTTAAACTTATTACCTCGGTGACAATTGAACTAGCCAGCTACATGCATGATTATTCACGAGAAACGTACTAAGCAGCTGGTTTTAGCATTTTCCATTTTATATATGTCTATAAAAGCTTGCCAAAAGCCAACAGTAGACACACAAGTAATGAATTGAAGCAAAGAGATCGATCGATCAATCGAGAGAGAACAGCAGCATGCACCATTCGAGCCGGTCTTCGTCTTGGCATGGCATCATCAGCTCGCCGCCATTCCATTTCCTGCAGCTGCAGGGGAGGTACAGCGCGGAGGAGCGGCGGGAGCGCATCGAAAGGTACCGGAGCAAGCGCAGCCACCGCAACTTCGGCAAGAGGATAACCGTAAGTATTTCATTACTACTGGTTGAGCAGTTCCACTTGTTAGCCTGAAGATAATCTTGTGCATTTGCAATAATTTGTTTGCTTTCAGTTAGTAAGTTTGAATTCTTAGGCATAGGATGCTGCATGCATTGTAACGGCTGTCCCAGGAAGTTTCAGTCTTGGGCAGCTGAGCTTTTCCCGTTTTTCTGTTAGTAGCGATGGAACTGGATCTGGAGCGTGGGATGGCGCGTTCAGTCATTTGGATCCGGTGAAATCGGTGTTTGTTATGCATGTAACAACCTCACAAGATGAGGGAATAAAATTGAAGAGAAATCAGAAAAGCTGCAGGTGGTTACGCAGCACCAAAAAAAAAAAAAAAACTCTGTTCTTCGTTTCAGTTCTTCAGTTACTGTTCACGTCTGAAAAATATTCAGAGATTGTAGGTTAGCCACTGATCGAGAGCTAAGCGAGGGGTTTTTGCTGACAATTGGTATTAGAGCGAGGTTCCGGTTCCGCTTTTGATGTCGTCGGATGGGCGCTACACTCCGCCACCGAGGCGTGGTGGAAGTGGCGGAAGCGGCGGCGAGCAGGGGAGCGGCAGCGCAAACGGCGCGACGATGCCGCTGGTGCCGCTGTCCAGAGATGGCGGCGCGACTGCGAGGCTGCCGATGCTGACGAGGACGAACTACCCCGACTGGGCACTGCTGATGCGAGTGAGTCTTCAGGCACAAGGGCTGTGGACGGCCATTGACCCCGGCTACGCGGAGAACCGCGAGGATCACGCGGCTCTCTCTGCCATACTCCAGGCCGTTCCGCGCGAGATGTTGCGCGGGCTGGCGAAGCACGACACGGCGAAGGCGGCGTGGGATGCCATCAAGACCATGCGGGTCGGTGTCGACCGCGTGCGTGAGGCCAAGGAGCAAGGGTTTCGCCGACAATTTGAATCGATGCGGTTTAAGGAGGGAGAGAGGCCGGAGGAGTTTGCGATGCGGCTCACTGCCGTCGTCGCGGACATCCGTGACATGGGCGGAGTCATGGAGGACGAACATGTTAACTAGAAGTTGCTGCGTGTTGTCCCTAAGAAGTACAAGCCGGTGGCAATCTCACTCGAGCAACTCCTCGATATCAAGACCATGGCCTTGGAGGAGCTCGTCGGGCGGTTGTCCATGATCGATTCGTACAGCGACGACGAGGAGGTGAGCGGCGGCGGCAAGCTGTACCTCACCGAAGAGCAGTGGGAGGCACGCGTGAAGCAGCGGGAGCAGGAGGGCTCTGGCAGTGGTGGCAAGGGCCGCGGCGGGACTGGTGGGCAAAACCGAAAGACGAAAGCTGCCGGACGTCCAAGGGCAAGGTGGCGGCCACTGGCGGAAGCGGTAGCCGGGATATTTCAAAGGTGAAATGTTTCAATTGTGATGAATTTGGTCACTATTCACGGCAATGTCGCAAGCCGCGGCGCCAACGTCGTGCAGAGGCAAACTTGGTGCAGGGAGAAGAAGAGCCAACTCTGCTCATGGCGCATGTCATGGGGGTGTCGCTCGCCGGGGAAGCGACACTAGACCGAACACCTAGCGTGCAAGAGGTACACCTCACTGAGAAGAAGGTCAATCTTGACCATGATGATGTCGGTGAGGAAGACAAGGCCGGTGACTGGTTCCTGGACACGGGAGCCACAAACCACATTACCGGGGCGCGCACGGCGTTCGCCGAACTCGACACCGGCGTCGTCGGCACGGTGAGGTTTGGAAATGGCTCAGTAATTGAAATCCGGGGACGCGGGACAGTGGTGTTCAGGTGTAAGAATGGAGATCATCGTTCGCTGGAGGGGGTGTACTACATCCCTAAACCGCGCAAGAACATTGTGAGTGTCGGCCGGCTCGACGAGCGCGGCTACGACTCACACATAAGGCACGGCGTCTTCACGCTGCACGACCCGGATGGTTTGCTCCTGGCCAAGGTAAATCGGGATTCCAGCTATCTATACGTACTTAAGCTGAACATGGCTAGTCCGATTTGTATGGCAACAAGTGGTGGCGAGGCGGCGTGGCGCTGGCACGCACGTCTCGGACACCTGAACTTCCAGGCACTTAGGAGGATGGCGCACGGTGACATGGTTCGTGGGCTCCCACGGATTGATCATGCGGACGAGCTATGCGACGGGTGCCTTGCAGGCAAGCAGCGTCGCGCGCCATTCCCGGCGGAGTCGAAGTTCAGAGCGCAGACGGTGCTCGAACTAGTGCATGGCGACCTCTGTGGTCCGATCTTGCCGGCGACGCCGGGCGGTCGGAAATATTTTCTCCTGCTGGTTGATGACATGAGTCGTCACATGTGGATTCGGCTCCTCACTTCCAAGCACGAGGCAGCGACAGCGATCAAACAGTTTCAGGCCGGTGTGGAGACGGAGACCGGTCATAAGCTGATGGCGCTGCGTACTGATCGCGGGGGTGAATTCACCTCCGTGGAGTTCATGGAGTATTGCGCCGATCATGGTGTGAAGCGCCAGCTCACGACGCCTTACTCGCCATAG
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| CDS seq | ATGGAGAAGTCGTCGCAGCTCCTCCCCTATCAAGTCGTTACCCTTCTCATCGGGCTCAGCCGAGCCGCTATCCTCCCCACCGCTGACCCCCATCACCGCCACTACAACCCCCGCCGCCACCGGTGGGGCGGGAGGGAGGAGAAGAGGGAAGCGGTGGTGGCTGGAGAGGAGGAGGCGGTGGGTGGGTCTGGAGAGGAGCTGCAGGGGAGGTACAGCGCGGAGGAGCGGCGGGAGCGCATCGAAAGGTACCGGAGCAAGCGCAGCCACCGCAACTTCGGCAAGAGGATAACCAGCGAGGTTCCGGTTCCGCTTTTGATGTCGTCGGATGGGCGCTACACTCCGCCACCGAGGCGTGGTGGAAGTGGCGGAAGCGGCGGCGAGCAGGGGAGCGGCAGCGCAAACGGCGCGACGATGCCGCTGGTGCCGCTGTCCAGAGATGGCGGCGCGACTGCGAGGCTGCCGATGCTGACGAGGACGAACTACCCCGACTGGGCACTGCTGATGCGAGTGAGTCTTCAGGCACAAGGGCTGTGGACGGCCATTGACCCCGGCTACGCGGAGAACCGCGAGGATCACGCGGCTCTCTCTGCCATACTCCAGGCCGTTCCGCGCGAGATGTTGCGCGGGCTGGCGAAGCACGACACGGCGAAGGCGGCGTGGGATGCCATCAAGACCATGCGGGTCGGTGTCGACCGCGTGCGTGAGGCCAAGGAGCAAGGGTTTCGCCGACAATTTGAATCGATGCGGTTTAAGGAGGGAGAGAGGCCGGAGGAGTTTGCGATGCGGCTCACTGCCGTCGTCGCGGACATCCGTGACATGGGCGGAGTCATGGAGGACGAACATAAGTACAAGCCGGTGGCAATCTCACTCGAGCAACTCCTCGATATCAAGACCATGGCCTTGGAGGAGCTCGTCGGGCGGTTGTCCATGATCGATTCGTACAGCGACGACGAGGAGGTGAGCGGCGGCGGCAAGCTGTACCTCACCGAAGAGCAGTGGGAGGCACGCGTGAAGCAGCGGGAGCAGGAGGGCTCTGGCAGTGGTGGCAAGGGCCGCGGCGGGACTGAGGCAAACTTGGTGCAGGGAGAAGAAGAGCCAACTCTGCTCATGGCGCATGTCATGGGGGTGTCGCTCGCCGGGGAAGCGACACTAGACCGAACACCTAGCGTGCAAGAGGTACACCTCACTGAGAAGAAGGTCAATCTTGACCATGATGATGTCGGTGAGGAAGACAAGGCCGGTGACTGGTTCCTGGACACGGGAGCCACAAACCACATTACCGGGGCGCGCACGGCGTTCGCCGAACTCGACACCGGCGTCGTCGGCACGGTGAGGTTTGGAAATGGCTCAGTAATTGAAATCCGGGGACGCGGGACAGTGGTGTTCAGGTGTAAGAATGGAGATCATCGTTCGCTGGAGGGGGTGTACTACATCCCTAAACCGCGCAAGAACATTGTGAGTGTCGGCCGGCTCGACGAGCGCGGCTACGACTCACACATAAGGCACGGCGTCTTCACGCTGCACGACCCGGATGGTTTGCTCCTGGCCAAGGTAAATCGGGATTCCAGCTATCTATACGTACTTAAGCTGAACATGGCTAGTCCGATTTGTATGGCAACAAGTGGTGGCGAGGCGGCGTGGCGCTGGCACGCACGTCTCGGACACCTGAACTTCCAGGCACTTAGGAGGATGGCGCACGGTGACATGGTTCGTGGGCTCCCACGGATTGATCATGCGGACGAGCTATGCGACGGGTGCCTTGCAGGCAAGCAGCGTCGCGCGCCATTCCCGGCGGAGTCGAAGTTCAGAGCGCAGACGGTGCTCGAACTAGTGCATGGCGACCTCTGTGGTCCGATCTTGCCGGCGACGCCGGGCGGTCGGAAATATTTTCTCCTGCTGGTTGATGACATGAGTCGTCACATGTGGATTCGGCTCCTCACTTCCAAGCACGAGGCAGCGACAGCGATCAAACAGTTTCAGGCCGGTGTGGAGACGGAGACCGGTCATAAGCTGATGGCGCTGCGTACTGATCGCGGGGGTGAATTCACCTCCGTGGAGTTCATGGAGTATTGCGCCGATCATGGTGTGAAGCGCCAGCTCACGACGCCTTACTCGCCATAG
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| Protein seq | MEKSSQLLPYQVVTLLIGLSRAAILPTADPHHRHYNPRRHRWGGREEKREAVVAGEEEAVGGSGEELQGRYSAEERRERIERYRSKRSHRNFGKRITSEVPVPLLMSSDGRYTPPPRRGGSGGSGGEQGSGSANGATMPLVPLSRDGGATARLPMLTRTNYPDWALLMRVSLQAQGLWTAIDPGYAENREDHAALSAILQAVPREMLRGLAKHDTAKAAWDAIKTMRVGVDRVREAKEQGFRRQFESMRFKEGERPEEFAMRLTAVVADIRDMGGVMEDEHKYKPVAISLEQLLDIKTMALEELVGRLSMIDSYSDDEEVSGGGKLYLTEEQWEARVKQREQEGSGSGGKGRGGTEANLVQGEEEPTLLMAHVMGVSLAGEATLDRTPSVQEVHLTEKKVNLDHDDVGEEDKAGDWFLDTGATNHITGARTAFAELDTGVVGTVRFGNGSVIEIRGRGTVVFRCKNGDHRSLEGVYYIPKPRKNIVSVGRLDERGYDSHIRHGVFTLHDPDGLLLAKVNRDSSYLYVLKLNMASPICMATSGGEAAWRWHARLGHLNFQALRRMAHGDMVRGLPRIDHADELCDGCLAGKQRRAPFPAESKFRAQTVLELVHGDLCGPILPATPGGRKYFLLLVDDMSRHMWIRLLTSKHEAATAIKQFQAGVETETGHKLMALRTDRGGEFTSVEFMEYCADHGVKRQLTTPYSP |
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| Function | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [UniProtKB/Swiss-Prot:P10978] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_11G0000800 | OsMH63_11T0000800.1 | Chr11 | 82680 | 86714 | + | maker | ||
| CDS seq | ATGGAGAAGTCGTCGCAGCTCCTCCCCTATCAAGTCGTTACCCTTCTCATCGGGCTCAGCCGAGCCGCTATCCTCCCCACCGCTGACCCCCATCACCGCCACTACAACCCCCGCCGCCACCGGTGGGGCGGGAGGGAGGAGAAGAGGGAAGCGGTGGTGGCTGGAGAGGAGGAGGCGGTGGGTGGGTCTGGAGAGGAGCTGCAGGGGAGGTACAGCGCGGAGGAGCGGCGGGAGCGCATCGAAAGGTACCGGAGCAAGCGCAGCCACCGCAACTTCGGCAAGAGGATAACCAGCGAGGTTCCGGTTCCGCTTTTGATGTCGTCGGATGGGCGCTACACTCCGCCACCGAGGCGTGGTGGAAGTGGCGGAAGCGGCGGCGAGCAGGGGAGCGGCAGCGCAAACGGCGCGACGATGCCGCTGGTGCCGCTGTCCAGAGATGGCGGCGCGACTGCGAGGCTGCCGATGCTGACGAGGACGAACTACCCCGACTGGGCACTGCTGATGCGAGTGAGTCTTCAGGCACAAGGGCTGTGGACGGCCATTGACCCCGGCTACGCGGAGAACCGCGAGGATCACGCGGCTCTCTCTGCCATACTCCAGGCCGTTCCGCGCGAGATGTTGCGCGGGCTGGCGAAGCACGACACGGCGAAGGCGGCGTGGGATGCCATCAAGACCATGCGGGTCGGTGTCGACCGCGTGCGTGAGGCCAAGGAGCAAGGGTTTCGCCGACAATTTGAATCGATGCGGTTTAAGGAGGGAGAGAGGCCGGAGGAGTTTGCGATGCGGCTCACTGCCGTCGTCGCGGACATCCGTGACATGGGCGGAGTCATGGAGGACGAACATAAGTACAAGCCGGTGGCAATCTCACTCGAGCAACTCCTCGATATCAAGACCATGGCCTTGGAGGAGCTCGTCGGGCGGTTGTCCATGATCGATTCGTACAGCGACGACGAGGAGGTGAGCGGCGGCGGCAAGCTGTACCTCACCGAAGAGCAGTGGGAGGCACGCGTGAAGCAGCGGGAGCAGGAGGGCTCTGGCAGTGGTGGCAAGGGCCGCGGCGGGACTGAGGCAAACTTGGTGCAGGGAGAAGAAGAGCCAACTCTGCTCATGGCGCATGTCATGGGGGTGTCGCTCGCCGGGGAAGCGACACTAGACCGAACACCTAGCGTGCAAGAGGTACACCTCACTGAGAAGAAGGTCAATCTTGACCATGATGATGTCGGTGAGGAAGACAAGGCCGGTGACTGGTTCCTGGACACGGGAGCCACAAACCACATTACCGGGGCGCGCACGGCGTTCGCCGAACTCGACACCGGCGTCGTCGGCACGGTGAGGTTTGGAAATGGCTCAGTAATTGAAATCCGGGGACGCGGGACAGTGGTGTTCAGGTGTAAGAATGGAGATCATCGTTCGCTGGAGGGGGTGTACTACATCCCTAAACCGCGCAAGAACATTGTGAGTGTCGGCCGGCTCGACGAGCGCGGCTACGACTCACACATAAGGCACGGCGTCTTCACGCTGCACGACCCGGATGGTTTGCTCCTGGCCAAGGTAAATCGGGATTCCAGCTATCTATACGTACTTAAGCTGAACATGGCTAGTCCGATTTGTATGGCAACAAGTGGTGGCGAGGCGGCGTGGCGCTGGCACGCACGTCTCGGACACCTGAACTTCCAGGCACTTAGGAGGATGGCGCACGGTGACATGGTTCGTGGGCTCCCACGGATTGATCATGCGGACGAGCTATGCGACGGGTGCCTTGCAGGCAAGCAGCGTCGCGCGCCATTCCCGGCGGAGTCGAAGTTCAGAGCGCAGACGGTGCTCGAACTAGTGCATGGCGACCTCTGTGGTCCGATCTTGCCGGCGACGCCGGGCGGTCGGAAATATTTTCTCCTGCTGGTTGATGACATGAGTCGTCACATGTGGATTCGGCTCCTCACTTCCAAGCACGAGGCAGCGACAGCGATCAAACAGTTTCAGGCCGGTGTGGAGACGGAGACCGGTCATAAGCTGATGGCGCTGCGTACTGATCGCGGGGGTGAATTCACCTCCGTGGAGTTCATGGAGTATTGCGCCGATCATGGTGTGAAGCGCCAGCTCACGACGCCTTACTCGCCATAG
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| Protein seq | MEKSSQLLPYQVVTLLIGLSRAAILPTADPHHRHYNPRRHRWGGREEKREAVVAGEEEAVGGSGEELQGRYSAEERRERIERYRSKRSHRNFGKRITSEVPVPLLMSSDGRYTPPPRRGGSGGSGGEQGSGSANGATMPLVPLSRDGGATARLPMLTRTNYPDWALLMRVSLQAQGLWTAIDPGYAENREDHAALSAILQAVPREMLRGLAKHDTAKAAWDAIKTMRVGVDRVREAKEQGFRRQFESMRFKEGERPEEFAMRLTAVVADIRDMGGVMEDEHKYKPVAISLEQLLDIKTMALEELVGRLSMIDSYSDDEEVSGGGKLYLTEEQWEARVKQREQEGSGSGGKGRGGTEANLVQGEEEPTLLMAHVMGVSLAGEATLDRTPSVQEVHLTEKKVNLDHDDVGEEDKAGDWFLDTGATNHITGARTAFAELDTGVVGTVRFGNGSVIEIRGRGTVVFRCKNGDHRSLEGVYYIPKPRKNIVSVGRLDERGYDSHIRHGVFTLHDPDGLLLAKVNRDSSYLYVLKLNMASPICMATSGGEAAWRWHARLGHLNFQALRRMAHGDMVRGLPRIDHADELCDGCLAGKQRRAPFPAESKFRAQTVLELVHGDLCGPILPATPGGRKYFLLLVDDMSRHMWIRLLTSKHEAATAIKQFQAGVETETGHKLMALRTDRGGEFTSVEFMEYCADHGVKRQLTTPYSP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0046205 | 0.028293 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g01090 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0000100 | SBH | 8.183520 | 5.455423 | 18.189522 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0007300 | RBH | 0 | 0 | 0.01622 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0091100 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000100 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000100 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000110 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000100 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000100 | SBH | 0.0 | 0.0 | 0.0 |
