Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_10G0155700 | OGI:10030990 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr10:10528532-10531016 | ||||||||
| Gene Symbol | RLR1, OsRLR1, - | ||||||||||
| DNA seq | TCAAAGAACATAGGCCATTTTCACAAGTACCAGGCCAATATAATATAAATGTAGATATTTGAGGTTGGAAAGCTTTTCAAGGGAAGAACGCAAAACATCAATCCATGTCTCCATATTAGATACTACATTTTTTCCAGAGTAACAGAGATTGAGATCTCTCAGATTAGTCAGCTCTCTGATACTTCTGATATTATGTAACGAGTTCTCCCCCAGATCAAAAGAACGCAGAGTGATCAGAGATTTCAAGTTTCCGATCCCATCAGGCAATCCTGTTCCTTCTGGGATAACAAGATGAATCAAGTGAGGCAGATGAACAATATCTGGTGGAATGCAAACTGATCCCCATTCTATATCAATGGATTCCAAAAGTTTTAGCTCCTGAATTTGAGCAGGCAATTGTATCTGCACATGAATATTGGCTTCAATCTTCACATATCTAAGTTGAAACAACTGACGAATTCCTGTTAGGTCCAAACTCATCTGGTGGACAGCATCTGAAAACACTGTAATTAAAACTCGGAGAAACTTAAAGTCTGAAAGATGATGCATGTGCATGTATTTAGAATTTCCAAAGATTGCAAGCGACCGAAGATATGTTAGACTAGTAGTTGCTGCTGCGGTGTCATGGTTTCCGTTGTCATATTGGAGGGAGAGCCGATGGACACTATTGTGCAGGCCCAGCAATGTACTGAAATTATCTGTTACTGTAAAAAAATTCTCTTCTGCTGCCTCATACAAGATAAGATCAAGCATCATATCATGTAGCTTACAGGATACTACATTATCCTGATAGTCTATGTCTGTGGGTAGAATCATGCTCCTGTTGACTAGCTCGTTGAAGTAGCTACCTGCAACATCTTCTGCATCTTGTACCTGGGCTTTATGAACAAAACCTTCAGTTATCCATTGCCTGACCACATCACTTTTCCTTATTATGTAGTCCTCTGGATAAATGCCAAGATAAAGAAAACATGTCTTGAGATGATAAGGAAGGTTTTTGTAACTAAGATGTAAAATGTTTCTCATTCCATCCAATGCAGGCATTATTCCAAACTTATCACTCAAAGAATTGCTTACGTACTCCCACTGTCTATCTACAGAGGTTGCTGGATTAGCTAACAGGCTAGAGACACTAACAATTGCAAGTGGCAGACCACCGCATCTTTGTAAAATTCCAGTTGAAACTCCCTTAAATCGTTCTGGACAGGCATTCTCCGAGCCAAATATTCTATTAAAAAATAGTCTTCTTGAATCATGTTCATTCAGTGGTTTCATCTTATAAATAAATTCACAGCGATAGCTGCAACATTCCATAGCCACCTTTGCAATCCGTGTTGTTGTTATCACTCTGCTAGCATGATTATTTTTGGGGAGGGCACATCTAAAAATGTCCCATGCAGATTTGTCCCATAAATCATCAATTATGATCAAATACCTGCAAATGTTTCACATGCAGCATATAAAATAAGCAAATTAGACTAAGAGTAAGTAAGGACTACACTCTCCTTAAAAACAGAGCAAATAGCACAAAGGAAAGACTCATTCTCAGTTCATTGCTATGAACATTTTGGACAGAGCAGAACTGTTCCAATTAAGTTTTTAAGAGGAGATAAGTTGTAGATTACTCATGACCAATATATAACCATCCATGAGACATTACATTGAAGAAACAAAAAAAGAAGAAGAAGAAGAAGAAAAGGTACCTTTTGTCTTGTAGATTCTCCCGCAGATTATTGAGAACACCATGTATCTCACAAGATGGAGTAAATGTCTCCTTGCCCAGTTGTGAGAGTATATTACTGAGGATCCTTACTATATCTGGTTTCTGAGAGATGGAGATAAATGCATGACAATCAAATTGCCCTCCAATCTTTTTGTACACTTCGTTAGCAAGTGCTGTCTTGCCTAGACCACCAATTCCCAAAACAGACACCACCATCAACTGTTGATCTGCACCCATCAACTATTTGGTAATCTCATCCCTTGGACCATCCATACCCACAAGGGCCTCTGCATCCGCATATAGCGCACAGAGGCGAGGATCAATGGCTGTATAGTCAGATGTAGAGATACTTGCATCAAGCTTATACCTTTTGTGCCGATGGCTCATCTCCACCACACGTGTTTTCACCTCATTTATTTGATTGGCCATGCGATTTTGTGTTCTCATCCTGTTGAGACGAAAAATGATCTTCGAAATGAACCCAGAATTGCTGTCGTCCTTAGTGAGATGATGCATGGCCTCATCAATCCAGTCCTCAATCTCATAAGCCATCTCTCTTACTTAGTTCATCCACTCTTTTGTGAGTGGATCGAGGTTGTCTTTGTCTGCAAGTATCTCCAGGAAAGCTTTCATGGTCCTGAGCTCATCCCTGAGGAAGCCCACCTCCTTAGGAGTGTTGCTGAACTTAACATGCTCTTCATCAATCAGGGTGGCAAGCTTGGCAAGAAGGCAGTTCATCACTCCCGTCGAAACACTCACCAT
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| CDS seq | ATGGTGAGTGTTTCGACGGGAGTGATGAACTGCCTTCTTGCCAAGCTTGCCACCCTGATTGATGAAGAGCATGTTAAGTTCAGCAACACTCCTAAGGAGGTGGGCTTCCTCAGGGATGAGCTCAGGACCATGAAAGCTTTCCTGGAGATACTTGCAGACAAAGACAACCTCGATCCACTCACAAAAGACAATTCTGGGTTCATTTCGAAGATCATTTTTCGTCTCAACAGGATGAGAACACAAAATCGCATGGCCAATCAAATAAATGAGGTGAAAACACGTGTGGTGGAGATGAGCCATCGGCACAAAAGGTATAAGCTTGATGCAAGTATCTCTACATCTGACTATACAGCCATTGATCCTCGCCTCTGTGCGCTATATGCGGATGCAGAGGCCCTTGTGGGTATGGATGATCAACAGTTGATGGTGGTGTCTGTTTTGGGAATTGGTGGTCTAGGCAAGACAGCACTTGCTAACGAAGTGTACAAAAAGATTGGAGGGCAATTTGATTGTCATGCATTTATCTCCATCTCTCAGAAACCAGATATAGTAAGGATCCTCAGTAATATACTCTCACAACTGGGCAAGGAGACATTTACTCCATCTTGTGAGATACATGGTGTTCTCAATAATCTGCGGGAGAATCTACAAGACAAAAGGTATTTGATCATAATTGATGATTTATGGGACAAATCTGCATGGGACATTTTTAGATGTGCCCTCCCCAAAAATAATCATGCTAGCAGAGTGATAACAACAACACGGATTGCAAAGGTGGCTATGGAATGTTGCAGCTATCGCTGTGAATTTATTTATAAGATGAAACCACTGAATGAACATGATTCAAGAAGACTATTTTTTAATAGAATATTTGGCTCGGAGAATGCCTGTCCAGAACGATTTAAGGGAGTTTCAACTGGAATTTTACAAAGATGCGGTGGTCTGCCACTTGCAATTGTTAGTGTCTCTAGCCTGTTAGCTAATCCAGCAACCTCTGTAGATAGACAGTGGGAGTACGTAAGCAATTCTTTGAGTGATAAGTTTGGAATAATGCCTGCATTGGATGGAATGAGAAACATTTTACATCTTAGTTACAAAAACCTTCCTTATCATCTCAAGACATGTTTTCTTTATCTTGGCATTTATCCAGAGGACTACATAATAAGGAAAAGTGATGTGGTCAGGCAATGGATAACTGAAGGTTTTGTTCATAAAGCCCAGGTACAAGATGCAGAAGATGTTGCAGGTAGCTACTTCAACGAGCTAGTCAACAGGAGCATGATTCTACCCACAGACATAGACTATCAGGATAATGTAGTATCCTGTAAGCTACATGATATGATGCTTGATCTTATCTTGTATGAGGCAGCAGAAGAGAATTTTTTTACAGTAACAGATAATTTCAGTACATTGCTGGGCCTGCACAATAGTGTCCATCGGCTCTCCCTCCAATATGACAACGGAAACCATGACACCGCAGCAGCAACTACTAGTCTAACATATCTTCGGTCGCTTGCAATCTTTGGAAATTCTAAATACATGCACATGCATCATCTTTCAGACTTTAAGTTTCTCCGAGTTTTAATTACAGTGTTTTCAGATGCTGTCCACCAGATGAGTTTGGACCTAACAGGAATTCGTCAGTTGTTTCAACTTAGATATGTGAAGATTGAAGCCAATATTCATGTGCAGATACAATTGCCTGCTCAAATTCAGGAGCTAAAACTTTTGGAATCCATTGATATAGAATGGGGATCAGTTTGCATTCCACCAGATATTGTTCATCTGCCTCACTTGATTCATCTTGTTATCCCAGAAGGAACAGGATTGCCTGATGGGATCGGAAACTTGAAATCTCTGATCACTCTGCGTTCTTTTGATCTGGGGGAGAACTCGTTACATAATATCAGAAGTATCAGAGAGCTGACTAATCTGAGAGATCTCAATCTCTGTTACTCTGGAAAAAATGTAGTATCTAATATGGAGACATGGATTGATGTTTTGCGTTCTTCCCTTGAAAAGCTTTCCAACCTCAAATATCTACATTTATATTATATTGGCCTGGTACTTGTGAAAATGGCCTATGTTCTTTGA
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| Protein seq | MVSVSTGVMNCLLAKLATLIDEEHVKFSNTPKEVGFLRDELRTMKAFLEILADKDNLDPLTKDNSGFISKIIFRLNRMRTQNRMANQINEVKTRVVEMSHRHKRYKLDASISTSDYTAIDPRLCALYADAEALVGMDDQQLMVVSVLGIGGLGKTALANEVYKKIGGQFDCHAFISISQKPDIVRILSNILSQLGKETFTPSCEIHGVLNNLRENLQDKRYLIIIDDLWDKSAWDIFRCALPKNNHASRVITTTRIAKVAMECCSYRCEFIYKMKPLNEHDSRRLFFNRIFGSENACPERFKGVSTGILQRCGGLPLAIVSVSSLLANPATSVDRQWEYVSNSLSDKFGIMPALDGMRNILHLSYKNLPYHLKTCFLYLGIYPEDYIIRKSDVVRQWITEGFVHKAQVQDAEDVAGSYFNELVNRSMILPTDIDYQDNVVSCKLHDMMLDLILYEAAEENFFTVTDNFSTLLGLHNSVHRLSLQYDNGNHDTAAATTSLTYLRSLAIFGNSKYMHMHHLSDFKFLRVLITVFSDAVHQMSLDLTGIRQLFQLRYVKIEANIHVQIQLPAQIQELKLLESIDIEWGSVCIPPDIVHLPHLIHLVIPEGTGLPDGIGNLKSLITLRSFDLGENSLHNIRSIRELTNLRDLNLCYSGKNVVSNMETWIDVLRSSLEKLSNLKYLHLYYIGLVLVKMAYVL |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_10G0155700 | OsMH63_10T0155700.1 | Chr10 | 10528532 | 10531016 | - | maker | ||
| CDS seq | ATGGTGAGTGTTTCGACGGGAGTGATGAACTGCCTTCTTGCCAAGCTTGCCACCCTGATTGATGAAGAGCATGTTAAGTTCAGCAACACTCCTAAGGAGGTGGGCTTCCTCAGGGATGAGCTCAGGACCATGAAAGCTTTCCTGGAGATACTTGCAGACAAAGACAACCTCGATCCACTCACAAAAGACAATTCTGGGTTCATTTCGAAGATCATTTTTCGTCTCAACAGGATGAGAACACAAAATCGCATGGCCAATCAAATAAATGAGGTGAAAACACGTGTGGTGGAGATGAGCCATCGGCACAAAAGGTATAAGCTTGATGCAAGTATCTCTACATCTGACTATACAGCCATTGATCCTCGCCTCTGTGCGCTATATGCGGATGCAGAGGCCCTTGTGGGTATGGATGATCAACAGTTGATGGTGGTGTCTGTTTTGGGAATTGGTGGTCTAGGCAAGACAGCACTTGCTAACGAAGTGTACAAAAAGATTGGAGGGCAATTTGATTGTCATGCATTTATCTCCATCTCTCAGAAACCAGATATAGTAAGGATCCTCAGTAATATACTCTCACAACTGGGCAAGGAGACATTTACTCCATCTTGTGAGATACATGGTGTTCTCAATAATCTGCGGGAGAATCTACAAGACAAAAGGTATTTGATCATAATTGATGATTTATGGGACAAATCTGCATGGGACATTTTTAGATGTGCCCTCCCCAAAAATAATCATGCTAGCAGAGTGATAACAACAACACGGATTGCAAAGGTGGCTATGGAATGTTGCAGCTATCGCTGTGAATTTATTTATAAGATGAAACCACTGAATGAACATGATTCAAGAAGACTATTTTTTAATAGAATATTTGGCTCGGAGAATGCCTGTCCAGAACGATTTAAGGGAGTTTCAACTGGAATTTTACAAAGATGCGGTGGTCTGCCACTTGCAATTGTTAGTGTCTCTAGCCTGTTAGCTAATCCAGCAACCTCTGTAGATAGACAGTGGGAGTACGTAAGCAATTCTTTGAGTGATAAGTTTGGAATAATGCCTGCATTGGATGGAATGAGAAACATTTTACATCTTAGTTACAAAAACCTTCCTTATCATCTCAAGACATGTTTTCTTTATCTTGGCATTTATCCAGAGGACTACATAATAAGGAAAAGTGATGTGGTCAGGCAATGGATAACTGAAGGTTTTGTTCATAAAGCCCAGGTACAAGATGCAGAAGATGTTGCAGGTAGCTACTTCAACGAGCTAGTCAACAGGAGCATGATTCTACCCACAGACATAGACTATCAGGATAATGTAGTATCCTGTAAGCTACATGATATGATGCTTGATCTTATCTTGTATGAGGCAGCAGAAGAGAATTTTTTTACAGTAACAGATAATTTCAGTACATTGCTGGGCCTGCACAATAGTGTCCATCGGCTCTCCCTCCAATATGACAACGGAAACCATGACACCGCAGCAGCAACTACTAGTCTAACATATCTTCGGTCGCTTGCAATCTTTGGAAATTCTAAATACATGCACATGCATCATCTTTCAGACTTTAAGTTTCTCCGAGTTTTAATTACAGTGTTTTCAGATGCTGTCCACCAGATGAGTTTGGACCTAACAGGAATTCGTCAGTTGTTTCAACTTAGATATGTGAAGATTGAAGCCAATATTCATGTGCAGATACAATTGCCTGCTCAAATTCAGGAGCTAAAACTTTTGGAATCCATTGATATAGAATGGGGATCAGTTTGCATTCCACCAGATATTGTTCATCTGCCTCACTTGATTCATCTTGTTATCCCAGAAGGAACAGGATTGCCTGATGGGATCGGAAACTTGAAATCTCTGATCACTCTGCGTTCTTTTGATCTGGGGGAGAACTCGTTACATAATATCAGAAGTATCAGAGAGCTGACTAATCTGAGAGATCTCAATCTCTGTTACTCTGGAAAAAATGTAGTATCTAATATGGAGACATGGATTGATGTTTTGCGTTCTTCCCTTGAAAAGCTTTCCAACCTCAAATATCTACATTTATATTATATTGGCCTGGTACTTGTGAAAATGGCCTATGTTCTTTGA
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| Protein seq | MVSVSTGVMNCLLAKLATLIDEEHVKFSNTPKEVGFLRDELRTMKAFLEILADKDNLDPLTKDNSGFISKIIFRLNRMRTQNRMANQINEVKTRVVEMSHRHKRYKLDASISTSDYTAIDPRLCALYADAEALVGMDDQQLMVVSVLGIGGLGKTALANEVYKKIGGQFDCHAFISISQKPDIVRILSNILSQLGKETFTPSCEIHGVLNNLRENLQDKRYLIIIDDLWDKSAWDIFRCALPKNNHASRVITTTRIAKVAMECCSYRCEFIYKMKPLNEHDSRRLFFNRIFGSENACPERFKGVSTGILQRCGGLPLAIVSVSSLLANPATSVDRQWEYVSNSLSDKFGIMPALDGMRNILHLSYKNLPYHLKTCFLYLGIYPEDYIIRKSDVVRQWITEGFVHKAQVQDAEDVAGSYFNELVNRSMILPTDIDYQDNVVSCKLHDMMLDLILYEAAEENFFTVTDNFSTLLGLHNSVHRLSLQYDNGNHDTAAATTSLTYLRSLAIFGNSKYMHMHHLSDFKFLRVLITVFSDAVHQMSLDLTGIRQLFQLRYVKIEANIHVQIQLPAQIQELKLLESIDIEWGSVCIPPDIVHLPHLIHLVIPEGTGLPDGIGNLKSLITLRSFDLGENSLHNIRSIRELTNLRDLNLCYSGKNVVSNMETWIDVLRSSLEKLSNLKYLHLYYIGLVLVKMAYVL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0.0164155 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g17690 | SBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0006400 | RBH | 0.160210 | 0.0 | 2.320252 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0006270 | SBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0006150 | RBH | 0.0 | 0.0 | 1.018181 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0006560 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0006280 | RBH | 0.0 | 12.932942 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0006430 | SBH | 0.119225 | 0.070488 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0171100 | SBH | 0.198776 | 0.855082 | 0.289031 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0006270 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0006310 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0006500 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0006180 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0006590 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G006390 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0006510 | RBH | 0.0 | 10.540287 | 0.0 |
